Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.32429 * 2 1 4 4 C 1.52525 * 110.24919 * 237.98335 * 2 1 3 5 5 C 1.46246 * 114.27173 * 151.62055 * 4 2 1 6 6 N 1.50165 * 107.53373 * 58.41277 * 5 4 2 7 7 S 1.65599 * 120.54095 * 109.60398 * 6 5 4 8 8 O 1.42100 * 106.40485 * 203.54070 * 7 6 5 9 9 O 1.42092 * 106.40444 * 336.46341 * 7 6 5 10 10 C 1.76207 * 107.21746 * 90.00207 * 7 6 5 11 11 H 1.08005 * 119.99323 * 359.97438 * 10 7 6 12 12 C 1.37870 * 120.00092 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00136 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 120.00002 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.46923 * 89.99411 * 14 12 10 16 16 H 1.48497 * 109.47043 * 209.99889 * 14 12 10 17 17 H 1.48501 * 109.46941 * 329.99805 * 14 12 10 18 18 C 1.43441 * 118.92224 * 289.58457 * 6 5 4 19 19 C 1.54899 * 116.07645 * 91.57087 * 18 6 5 20 20 C 1.50129 * 110.24515 * 122.00106 * 2 1 3 21 21 C 1.52993 * 109.17791 * 336.98150 * 20 2 1 22 22 O 1.42906 * 109.20808 * 96.31722 * 20 2 1 23 23 H 1.09011 * 109.47296 * 182.01172 * 1 2 3 24 24 H 1.09003 * 109.47309 * 302.01020 * 1 2 3 25 25 H 1.08997 * 109.47132 * 62.01606 * 1 2 3 26 26 H 1.09003 * 108.52279 * 30.38958 * 4 2 1 27 27 H 1.08997 * 108.52778 * 272.86091 * 4 2 1 28 28 H 1.09001 * 109.83991 * 177.91682 * 5 4 2 29 29 H 1.08995 * 109.84708 * 298.83657 * 5 4 2 30 30 H 0.97000 * 119.99829 * 180.02562 * 13 12 10 31 31 H 1.08993 * 108.16039 * 213.28670 * 18 6 5 32 32 H 1.09002 * 108.15609 * 330.06408 * 18 6 5 33 33 H 1.08999 * 109.36113 * 78.84738 * 19 18 6 34 34 H 1.09006 * 109.35612 * 198.43296 * 19 18 6 35 35 H 1.09008 * 109.46861 * 298.69684 * 21 20 2 36 36 H 1.09000 * 109.47269 * 58.69918 * 21 20 2 37 37 H 1.08996 * 109.47531 * 178.69969 * 21 20 2 38 38 H 0.96699 * 113.99995 * 181.32150 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0579 -0.7587 -1.2133 5 6 3.3664 -0.3052 -1.6833 6 7 4.3330 -0.4543 -0.5438 7 16 5.5129 -1.6154 -0.5877 8 8 5.8695 -1.8765 0.7629 9 8 5.0523 -2.6221 -1.4784 10 6 6.9295 -0.8911 -1.3451 11 1 6.8986 0.1365 -1.6762 12 6 8.0767 -1.6364 -1.5160 13 7 8.1140 -2.8878 -1.1132 14 14 9.5787 -0.8683 -2.3183 15 1 10.4343 -0.2480 -1.2751 16 1 10.3499 -1.9178 -3.0316 17 1 9.1456 0.1716 -3.2859 18 6 4.2179 0.4256 0.5832 19 6 3.3293 -0.0743 1.7494 20 6 2.0495 -0.7464 1.1945 21 6 0.9756 -0.7610 2.2841 22 8 2.3515 -2.0905 0.8142 23 1 -0.3634 -1.0271 0.0361 24 1 -0.3634 0.5447 0.8714 25 1 -0.3633 0.4822 -0.9075 26 1 1.3413 -0.6512 -2.0276 27 1 2.1294 -1.8156 -0.9567 28 1 3.6897 -0.9173 -2.5252 29 1 3.3088 0.7402 -1.9865 30 1 8.9213 -3.4120 -1.2331 31 1 5.2186 0.6102 0.9736 32 1 3.8117 1.3746 0.2331 33 1 3.8875 -0.7966 2.3451 34 1 3.0498 0.7708 2.3786 35 1 0.7500 0.2620 2.5856 36 1 0.0725 -1.2335 1.8979 37 1 1.3392 -1.3218 3.1452 38 1 2.6742 -2.6416 1.5403 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -135.401960 kcal Electronic energy + Delta-G solvation = -21925.388557 eV Core-core repulsion = 18701.509603 eV Total energy + Delta-G solvation = -3223.878954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80750 -35.54009 -35.15254 -33.78856 -33.60883 -32.97585 -32.15495 -28.19827 -28.03692 -26.03273 -23.93915 -22.83834 -20.92888 -19.26448 -18.61398 -16.92781 -16.41727 -16.16969 -15.44226 -15.10234 -14.71498 -14.33487 -14.13965 -13.67239 -13.28699 -13.21207 -13.02864 -12.55674 -12.37422 -12.03016 -11.89719 -11.52528 -11.43594 -11.26453 -11.18484 -11.00377 -10.89132 -10.80539 -10.56876 -10.12467 -10.04425 -9.97615 -9.74560 -9.71126 -9.43358 -9.19445 -8.77615 -8.04621 -6.63321 -5.24996 2.42340 3.09318 3.15968 3.22928 4.10834 4.49812 4.61358 4.69781 4.90616 5.02386 5.08885 5.24045 5.49227 5.49878 5.58595 5.65245 5.77883 5.84286 5.92003 5.93455 5.98717 6.06882 6.07507 6.11675 6.26086 6.27834 6.37622 6.45644 6.55525 6.65156 6.67920 7.00661 7.16419 7.38709 7.80261 8.04335 8.10754 8.95379 10.29683 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.006304 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.095549 B = 4440.477591 C = 4562.904325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 H 0.079 0.921 4 C -0.144 4.144 5 C 0.136 3.864 6 N -0.999 5.999 7 S 2.726 3.274 8 O -1.007 7.007 9 O -1.003 7.003 10 C -1.027 5.027 11 H 0.100 0.900 12 C 0.133 3.867 13 N -0.847 5.847 14 Si 0.917 3.083 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.263 1.263 18 C 0.140 3.860 19 C -0.168 4.168 20 C 0.137 3.863 21 C -0.180 4.180 22 O -0.545 6.545 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.290 0.710 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.973 7.488 3.420 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.098 0.902 4 C -0.182 4.182 5 C 0.012 3.988 6 N -0.833 5.833 7 S 2.826 3.174 8 O -0.997 6.997 9 O -0.993 6.993 10 C -1.160 5.160 11 H 0.118 0.882 12 C -0.085 4.085 13 N -0.477 5.477 14 Si 0.741 3.259 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.187 1.187 18 C 0.011 3.989 19 C -0.208 4.208 20 C 0.096 3.904 21 C -0.237 4.237 22 O -0.352 6.352 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.192 6.659 3.187 14.253 hybrid contribution 1.334 0.746 -0.002 1.528 sum -10.858 7.405 3.185 13.523 Atomic orbital electron populations 1.21975 0.95165 1.01757 1.01074 1.20584 0.94919 0.99014 0.94976 0.90238 1.20775 0.96560 1.04711 0.96141 1.20534 0.88633 1.00547 0.89121 1.58013 1.47474 1.53978 1.23849 1.00232 0.72292 0.71562 0.73339 1.93322 1.83867 1.83907 1.38603 1.93334 1.82299 1.56593 1.67116 1.30792 1.17778 1.10259 1.57169 0.88211 1.24745 0.99275 0.93545 0.90909 1.69906 1.30687 1.07584 1.39504 0.86217 0.80343 0.79614 0.79701 1.19232 1.19961 1.18689 1.20377 0.99468 0.92470 0.86583 1.23501 0.96777 1.01536 0.98943 1.20780 0.92563 0.83691 0.93332 1.22714 1.00072 1.02002 0.98927 1.86665 1.87790 1.21770 1.38952 0.92366 0.92683 0.92987 0.92755 0.87540 0.89232 0.92512 0.90009 0.91404 0.92497 0.90481 0.90980 0.91993 0.91538 0.92954 0.78532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.68 37.16 0.29 -1.26 16 2 C -0.08 -1.02 2.39 -92.29 -0.22 -1.24 16 3 H 0.08 1.00 6.28 -51.93 -0.33 0.68 16 4 C -0.14 -2.28 4.60 -30.18 -0.14 -2.42 16 5 C 0.14 2.41 5.93 -5.20 -0.03 2.38 16 6 N -1.00 -20.53 2.52 -116.10 -0.29 -20.82 16 7 S 2.73 73.62 4.92 -107.50 -0.53 73.09 16 8 O -1.01 -29.20 17.14 -57.17 -0.98 -30.18 16 9 O -1.00 -29.87 16.83 -57.17 -0.96 -30.83 16 10 C -1.03 -29.08 9.74 30.60 0.30 -28.78 16 11 H 0.10 2.61 7.81 -52.48 -0.41 2.20 16 12 C 0.13 3.79 5.46 -17.82 -0.10 3.70 16 13 N -0.85 -25.44 13.19 55.43 0.73 -24.71 16 14 Si 0.92 20.98 29.54 -169.99 -5.02 15.95 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 18 C 0.14 2.43 4.76 -4.66 -0.02 2.41 16 19 C -0.17 -2.53 5.46 -24.76 -0.14 -2.66 16 20 C 0.14 1.93 0.87 -91.08 -0.08 1.85 16 21 C -0.18 -2.00 7.39 37.15 0.27 -1.73 16 22 O -0.54 -9.18 9.61 -35.23 -0.34 -9.52 16 23 H 0.06 0.66 7.33 -51.92 -0.38 0.28 16 24 H 0.05 0.52 6.73 -51.93 -0.35 0.17 16 25 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.05 0.74 7.80 -51.93 -0.40 0.34 16 27 H 0.11 2.00 5.44 -51.69 -0.28 1.72 16 28 H 0.09 1.72 7.30 -51.93 -0.38 1.34 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 30 H 0.29 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.07 1.26 7.81 -51.93 -0.41 0.85 16 32 H 0.06 0.82 6.88 -51.93 -0.36 0.46 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.88 16 34 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 35 H 0.06 0.60 7.64 -51.92 -0.40 0.21 16 36 H 0.07 0.72 6.24 -51.93 -0.32 0.39 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.37 5.51 8.98 45.82 0.41 5.92 16 LS Contribution 304.31 15.07 4.59 4.59 Total: -1.00 -35.17 304.31 -7.51 -42.68 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.84 Total: 7.51 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 0.13 Total: -27.75 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.44 Total: -45.53 kcal Atomic # 8 Polarization: -68.25 SS G_CDS: -2.28 Total: -70.53 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 73.62 SS G_CDS: -0.53 Total: 73.09 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.17 -7.51 -42.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.726 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds