Wall clock time and date at job start Mon Mar 30 2020 01:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99777 * 2 1 4 4 C 1.53001 * 109.47386 * 59.99892 * 3 2 1 5 5 C 1.52999 * 109.47191 * 299.99871 * 3 2 1 6 6 C 1.53004 * 109.47028 * 179.97438 * 3 2 1 7 7 H 1.09004 * 109.87169 * 52.41179 * 6 3 2 8 8 C 1.54323 * 109.88033 * 173.58901 * 6 3 2 9 9 C 1.55162 * 102.93632 * 141.61407 * 8 6 3 10 10 C 1.54914 * 101.58069 * 324.49453 * 9 8 6 11 11 N 1.47018 * 109.88054 * 291.39985 * 6 3 2 12 12 S 1.65608 * 125.65029 * 61.60786 * 11 6 3 13 13 O 1.42099 * 106.39968 * 221.56383 * 12 11 6 14 14 O 1.42095 * 106.40100 * 354.48310 * 12 11 6 15 15 C 1.76197 * 107.21890 * 108.02385 * 12 11 6 16 16 H 1.08003 * 119.99681 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00034 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99730 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 119.99949 * 359.97438 * 17 15 12 20 20 H 1.48500 * 109.46749 * 90.00247 * 19 17 15 21 21 H 1.48492 * 109.47232 * 210.00116 * 19 17 15 22 22 H 1.48499 * 109.46892 * 330.00529 * 19 17 15 23 23 H 1.09004 * 109.47357 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47593 * 300.00185 * 1 2 3 25 25 H 1.09007 * 109.47045 * 60.00271 * 1 2 3 26 26 H 1.09000 * 109.46934 * 299.99924 * 4 3 2 27 27 H 1.08994 * 109.47604 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46935 * 59.99300 * 4 3 2 29 29 H 1.08999 * 109.47000 * 176.51868 * 5 3 2 30 30 H 1.09005 * 109.46874 * 296.51635 * 5 3 2 31 31 H 1.08998 * 109.47563 * 56.51268 * 5 3 2 32 32 H 1.08997 * 110.72002 * 259.97311 * 8 6 3 33 33 H 1.08996 * 110.71937 * 23.25044 * 8 6 3 34 34 H 1.09003 * 110.99699 * 206.42440 * 9 8 6 35 35 H 1.08996 * 111.00739 * 82.57334 * 9 8 6 36 36 H 1.09003 * 110.36656 * 278.16828 * 10 9 8 37 37 H 1.09003 * 110.45183 * 155.89941 * 10 9 8 38 38 H 0.97009 * 119.99265 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 1 3.8558 0.5320 -0.8114 8 6 4.1725 2.5809 -0.1614 9 6 5.4034 2.5126 0.7808 10 6 4.8593 1.6416 1.9406 11 7 3.9935 0.6426 1.2882 12 16 3.6012 -0.8438 1.9040 13 8 3.3483 -0.6502 3.2889 14 8 2.6507 -1.4095 1.0121 15 6 5.0437 -1.8498 1.7975 16 1 5.9550 -1.4449 1.3828 17 6 5.0089 -3.1543 2.2426 18 7 6.0859 -3.9050 2.1636 19 14 3.4325 -3.8549 2.9592 20 1 2.6238 -4.4653 1.8736 21 1 3.7656 -4.8902 3.9703 22 1 2.6549 -2.7660 3.6033 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.4721 2.1509 1.2492 27 1 2.0016 3.0607 1.2490 28 1 1.8802 1.5239 2.1392 29 1 1.9517 3.0810 -1.2186 30 1 1.9333 1.5570 -2.1381 31 1 0.4697 2.0970 -1.2811 32 1 4.4849 2.7450 -1.1927 33 1 3.4820 3.3598 0.1620 34 1 5.6800 3.5058 1.1346 35 1 6.2456 2.0262 0.2887 36 1 4.2795 2.2516 2.6334 37 1 5.6789 1.1493 2.4641 38 1 6.0612 -4.8229 2.4764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:22 Heat of formation + Delta-G solvation = -109.601622 kcal Electronic energy + Delta-G solvation = -22191.940589 eV Core-core repulsion = 18969.180421 eV Total energy + Delta-G solvation = -3222.760168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.53487 -36.91237 -35.30862 -34.10800 -32.91927 -32.32462 -30.39733 -27.99183 -27.12750 -26.30175 -26.22301 -22.33886 -21.25370 -19.41217 -18.33175 -17.30888 -16.56475 -16.35831 -15.69901 -15.07546 -14.70265 -14.67749 -13.78156 -13.45769 -13.29285 -13.17153 -13.03563 -12.81679 -12.60987 -12.27589 -11.87439 -11.78388 -11.67832 -11.30424 -11.18459 -11.07824 -10.91267 -10.75676 -10.65257 -10.53025 -10.29476 -10.21959 -9.89162 -9.68911 -9.11208 -9.03464 -8.77731 -8.09905 -6.70788 -5.21526 2.20387 3.13524 3.25305 3.34702 4.04126 4.15235 4.34925 4.68156 4.81376 4.97692 5.12961 5.19497 5.23107 5.28858 5.55362 5.63304 5.66191 5.68040 5.75946 5.79330 5.86761 5.89214 5.96729 6.04342 6.10962 6.16428 6.18867 6.26856 6.32721 6.38845 6.48605 6.55419 6.88295 7.43251 7.59348 7.82819 8.31635 8.81894 10.42090 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.009272 C = 0.007507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.415806 B = 3019.268315 C = 3728.923470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.314 6.314 3 C 0.076 3.924 4 C -0.177 4.177 5 C -0.173 4.173 6 C 0.173 3.827 7 H 0.081 0.919 8 C -0.122 4.122 9 C -0.131 4.131 10 C 0.122 3.878 11 N -1.002 6.002 12 S 2.684 3.316 13 O -1.015 7.015 14 O -0.961 6.961 15 C -1.021 5.021 16 H 0.116 0.884 17 C 0.153 3.847 18 N -0.829 5.829 19 Si 0.803 3.197 20 H -0.246 1.246 21 H -0.258 1.258 22 H -0.220 1.220 23 H 0.082 0.918 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 13.528 -5.215 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.232 6.232 3 C 0.034 3.966 4 C -0.234 4.234 5 C -0.230 4.230 6 C 0.066 3.934 7 H 0.099 0.901 8 C -0.161 4.161 9 C -0.169 4.169 10 C -0.004 4.004 11 N -0.837 5.837 12 S 2.787 3.213 13 O -1.005 7.005 14 O -0.951 6.951 15 C -1.154 5.154 16 H 0.135 0.865 17 C -0.066 4.066 18 N -0.458 5.458 19 Si 0.623 3.377 20 H -0.169 1.169 21 H -0.182 1.182 22 H -0.142 1.142 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.655 12.874 -4.797 15.266 hybrid contribution -0.012 -0.432 0.189 0.472 sum -6.667 12.442 -4.607 14.848 Atomic orbital electron populations 1.22753 0.83937 1.02265 0.98571 1.88794 1.17238 1.22778 1.94391 1.22086 0.94610 0.85760 0.94117 1.22419 1.00941 1.00871 0.99194 1.22378 1.01632 1.00576 0.98462 1.21061 0.90100 0.95020 0.87229 0.90119 1.22727 0.97302 0.95755 1.00293 1.22792 0.97737 0.99856 0.96561 1.21848 0.93371 0.90467 0.94747 1.58806 1.63140 1.32786 1.28971 1.01301 0.75754 0.71422 0.72817 1.93441 1.86792 1.85643 1.34620 1.93507 1.61776 1.74731 1.65081 1.30717 1.19545 1.09828 1.55303 0.86548 1.24427 0.96406 0.95334 0.90410 1.70009 1.28087 1.08489 1.39264 0.87853 0.84136 0.83979 0.81762 1.16939 1.18220 1.14215 0.89978 0.94860 0.94925 0.92580 0.91605 0.91576 0.91643 0.91639 0.92237 0.90406 0.90526 0.90586 0.90522 0.92329 0.90660 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.21 101.05 1.03 1.38 16 2 O -0.31 -6.27 6.16 -60.40 -0.37 -6.64 16 3 C 0.08 1.23 0.61 -90.62 -0.06 1.17 16 4 C -0.18 -2.68 7.82 37.16 0.29 -2.39 16 5 C -0.17 -2.09 7.93 37.16 0.29 -1.79 16 6 C 0.17 2.93 2.64 -66.95 -0.18 2.75 16 7 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 8 C -0.12 -1.47 5.20 -24.89 -0.13 -1.60 16 9 C -0.13 -1.63 7.09 -24.58 -0.17 -1.81 16 10 C 0.12 2.04 7.19 -2.53 -0.02 2.02 16 11 N -1.00 -20.41 2.32 -104.42 -0.24 -20.65 16 12 S 2.68 70.33 4.01 -107.50 -0.43 69.90 16 13 O -1.01 -28.59 15.87 -57.17 -0.91 -29.50 16 14 O -0.96 -26.07 12.36 -67.41 -0.83 -26.90 16 15 C -1.02 -29.90 10.29 30.60 0.31 -29.59 16 16 H 0.12 3.46 8.06 -52.48 -0.42 3.03 16 17 C 0.15 4.58 5.47 -17.82 -0.10 4.48 16 18 N -0.83 -24.85 13.96 55.43 0.77 -24.08 16 19 Si 0.80 21.46 26.54 -169.99 -4.51 16.95 16 20 H -0.25 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.22 -6.01 5.61 56.52 0.32 -5.69 16 23 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.03 0.49 6.42 -51.93 -0.33 0.16 16 25 H 0.03 0.42 6.34 -51.93 -0.33 0.09 16 26 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 27 H 0.07 0.81 6.45 -51.93 -0.33 0.48 16 28 H 0.07 1.20 7.22 -51.93 -0.37 0.83 16 29 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.66 6.36 -51.93 -0.33 0.33 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.80 5.50 -51.93 -0.29 0.52 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -34.71 298.59 -6.45 -41.16 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.70 Total: 0.64 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 1.28 Total: -25.37 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.53 Total: -44.73 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -2.11 Total: -63.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.51 Total: 16.95 kcal Atomic # 16 Polarization: 70.33 SS G_CDS: -0.43 Total: 69.90 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.71 -6.45 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.443 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds