Wall clock time and date at job start Mon Mar 30 2020 01:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99777 * 2 1 4 4 C 1.53001 * 109.47386 * 59.99892 * 3 2 1 5 5 C 1.52999 * 109.47191 * 299.99871 * 3 2 1 6 6 C 1.53004 * 109.47028 * 179.97438 * 3 2 1 7 7 H 1.09004 * 109.87169 * 52.41179 * 6 3 2 8 8 C 1.54323 * 109.88033 * 173.58901 * 6 3 2 9 9 C 1.55162 * 102.93632 * 141.61407 * 8 6 3 10 10 C 1.54914 * 101.58069 * 324.49453 * 9 8 6 11 11 N 1.47018 * 109.88054 * 291.39985 * 6 3 2 12 12 S 1.65608 * 125.65029 * 61.60786 * 11 6 3 13 13 O 1.42099 * 106.39968 * 221.56383 * 12 11 6 14 14 O 1.42095 * 106.40100 * 354.48310 * 12 11 6 15 15 C 1.76197 * 107.21890 * 108.02385 * 12 11 6 16 16 H 1.08003 * 119.99681 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00034 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99730 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 119.99949 * 359.97438 * 17 15 12 20 20 H 1.48500 * 109.46749 * 90.00247 * 19 17 15 21 21 H 1.48492 * 109.47232 * 210.00116 * 19 17 15 22 22 H 1.48499 * 109.46892 * 330.00529 * 19 17 15 23 23 H 1.09004 * 109.47357 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47593 * 300.00185 * 1 2 3 25 25 H 1.09007 * 109.47045 * 60.00271 * 1 2 3 26 26 H 1.09000 * 109.46934 * 299.99924 * 4 3 2 27 27 H 1.08994 * 109.47604 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46935 * 59.99300 * 4 3 2 29 29 H 1.08999 * 109.47000 * 176.51868 * 5 3 2 30 30 H 1.09005 * 109.46874 * 296.51635 * 5 3 2 31 31 H 1.08998 * 109.47563 * 56.51268 * 5 3 2 32 32 H 1.08997 * 110.72002 * 259.97311 * 8 6 3 33 33 H 1.08996 * 110.71937 * 23.25044 * 8 6 3 34 34 H 1.09003 * 110.99699 * 206.42440 * 9 8 6 35 35 H 1.08996 * 111.00739 * 82.57334 * 9 8 6 36 36 H 1.09003 * 110.36656 * 278.16828 * 10 9 8 37 37 H 1.09003 * 110.45183 * 155.89941 * 10 9 8 38 38 H 0.97009 * 119.99265 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 1 3.8558 0.5320 -0.8114 8 6 4.1725 2.5809 -0.1614 9 6 5.4034 2.5126 0.7808 10 6 4.8593 1.6416 1.9406 11 7 3.9935 0.6426 1.2882 12 16 3.6012 -0.8438 1.9040 13 8 3.3483 -0.6502 3.2889 14 8 2.6507 -1.4095 1.0121 15 6 5.0437 -1.8498 1.7975 16 1 5.9550 -1.4449 1.3828 17 6 5.0089 -3.1543 2.2426 18 7 6.0859 -3.9050 2.1636 19 14 3.4325 -3.8549 2.9592 20 1 2.6238 -4.4653 1.8736 21 1 3.7656 -4.8902 3.9703 22 1 2.6549 -2.7660 3.6033 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.4721 2.1509 1.2492 27 1 2.0016 3.0607 1.2490 28 1 1.8802 1.5239 2.1392 29 1 1.9517 3.0810 -1.2186 30 1 1.9333 1.5570 -2.1381 31 1 0.4697 2.0970 -1.2811 32 1 4.4849 2.7450 -1.1927 33 1 3.4820 3.3598 0.1620 34 1 5.6800 3.5058 1.1346 35 1 6.2456 2.0262 0.2887 36 1 4.2795 2.2516 2.6334 37 1 5.6789 1.1493 2.4641 38 1 6.0612 -4.8229 2.4764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:21 Heat of formation + Delta-G solvation = -135.699260 kcal Electronic energy + Delta-G solvation = -22193.072267 eV Core-core repulsion = 18969.180421 eV Total energy + Delta-G solvation = -3223.891846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76590 -38.20930 -37.42133 -36.22898 -35.19360 -33.54588 -31.67850 -29.20441 -28.57452 -28.05887 -27.52610 -23.66256 -22.38505 -20.99573 -20.15724 -18.99082 -18.57488 -17.62241 -17.22842 -16.85591 -16.30233 -15.92988 -15.44863 -15.33137 -15.02318 -14.70960 -14.48132 -14.31245 -13.84652 -13.45293 -13.40797 -13.21857 -13.05476 -12.81559 -12.77421 -12.59720 -12.42529 -12.36290 -12.15660 -11.97131 -11.77699 -11.71787 -11.65010 -11.35507 -11.21515 -10.92568 -10.20615 -9.67135 -8.98904 -7.52137 0.24058 0.99890 1.10665 1.18212 1.86774 2.40287 2.61782 2.97295 3.52296 3.65851 3.80497 3.97880 4.08885 4.14004 4.25270 4.40140 4.50549 4.53971 4.58273 4.66563 4.75562 4.76600 4.86929 4.92872 4.96166 5.02319 5.09332 5.13206 5.21466 5.26065 5.27746 5.39480 5.42555 5.57803 5.87756 5.98122 6.52651 6.63637 8.19698 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.009272 C = 0.007507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.415806 B = 3019.268315 C = 3728.923470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.364 6.364 3 C 0.064 3.936 4 C -0.175 4.175 5 C -0.164 4.164 6 C 0.156 3.844 7 H 0.059 0.941 8 C -0.108 4.108 9 C -0.119 4.119 10 C 0.105 3.895 11 N -1.006 6.006 12 S 2.706 3.294 13 O -1.041 7.041 14 O -0.974 6.974 15 C -1.049 5.049 16 H 0.095 0.905 17 C 0.106 3.894 18 N -0.859 5.859 19 Si 0.830 3.170 20 H -0.236 1.236 21 H -0.219 1.219 22 H -0.233 1.233 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.026 0.974 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 16.209 -6.138 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.283 6.283 3 C 0.024 3.976 4 C -0.233 4.233 5 C -0.222 4.222 6 C 0.050 3.950 7 H 0.077 0.923 8 C -0.147 4.147 9 C -0.158 4.158 10 C -0.020 4.020 11 N -0.844 5.844 12 S 2.807 3.193 13 O -1.032 7.032 14 O -0.964 6.964 15 C -1.180 5.180 16 H 0.113 0.887 17 C -0.110 4.110 18 N -0.490 5.490 19 Si 0.647 3.353 20 H -0.160 1.160 21 H -0.141 1.141 22 H -0.156 1.156 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.046 0.954 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.641 15.521 -5.716 18.220 hybrid contribution 0.358 -1.184 0.430 1.310 sum -7.282 14.337 -5.286 16.928 Atomic orbital electron populations 1.22876 0.82561 1.02224 1.00374 1.88686 1.19098 1.25673 1.94823 1.22361 0.93707 0.85035 0.96544 1.22429 1.02115 1.01760 0.96952 1.22322 1.02441 1.01489 0.95904 1.21542 0.91533 0.97384 0.84518 0.92263 1.22798 0.96920 0.92955 1.02016 1.22804 0.97618 1.00722 0.94674 1.22224 0.92699 0.90336 0.96772 1.58363 1.63880 1.31424 1.30753 1.00378 0.74394 0.72288 0.72246 1.93393 1.86786 1.86557 1.36415 1.93488 1.61500 1.76379 1.65067 1.31358 1.20696 1.10960 1.54975 0.88674 1.25204 0.98962 0.95917 0.90905 1.70032 1.29368 1.09419 1.40142 0.87425 0.81261 0.84162 0.82467 1.15968 1.14143 1.15577 0.91159 0.94222 0.91795 0.91157 0.88355 0.95432 0.88434 0.91891 0.91122 0.87449 0.87778 0.86546 0.91088 0.90798 0.92746 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.21 113.37 1.16 1.66 16 2 O -0.36 -14.39 6.16 -124.92 -0.77 -15.16 16 3 C 0.06 1.95 0.61 -10.79 -0.01 1.94 16 4 C -0.18 -4.86 7.82 71.98 0.56 -4.30 16 5 C -0.16 -3.32 7.93 71.98 0.57 -2.74 16 6 C 0.16 5.06 2.64 45.34 0.12 5.18 16 7 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 8 C -0.11 -2.15 5.20 31.78 0.17 -1.99 16 9 C -0.12 -2.60 7.09 31.99 0.23 -2.38 16 10 C 0.10 3.42 7.19 86.86 0.62 4.04 16 11 N -1.01 -41.06 2.32 -484.27 -1.12 -42.18 16 12 S 2.71 145.74 4.01 -56.49 -0.23 145.51 16 13 O -1.04 -60.31 15.87 -128.00 -2.03 -62.34 16 14 O -0.97 -54.27 12.36 -118.21 -1.46 -55.73 16 15 C -1.05 -64.04 10.29 67.73 0.70 -63.34 16 16 H 0.09 5.98 8.06 -2.91 -0.02 5.96 16 17 C 0.11 6.50 5.47 84.65 0.46 6.97 16 18 N -0.86 -52.69 13.96 21.45 0.30 -52.39 16 19 Si 0.83 44.09 26.54 68.60 1.82 45.91 16 20 H -0.24 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.22 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.23 -12.85 5.61 99.48 0.56 -12.29 16 23 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.04 1.13 6.42 -2.39 -0.02 1.12 16 25 H 0.06 1.52 6.34 -2.38 -0.02 1.50 16 26 H 0.07 1.70 6.54 -2.39 -0.02 1.69 16 27 H 0.10 1.99 6.45 -2.39 -0.02 1.98 16 28 H 0.03 0.96 7.22 -2.39 -0.02 0.95 16 29 H 0.10 1.34 6.78 -2.39 -0.02 1.32 16 30 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.28 6.36 -2.39 -0.02 1.26 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.53 5.50 -2.39 -0.01 1.52 16 34 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.29 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -79.46 298.59 1.99 -77.47 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.90 Total: 13.86 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 4.58 Total: -54.96 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -0.82 Total: -94.57 kcal Atomic # 8 Polarization: -128.96 SS G_CDS: -4.26 Total: -133.23 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.82 Total: 45.91 kcal Atomic # 16 Polarization: 145.74 SS G_CDS: -0.23 Total: 145.51 kcal Total: -79.46 1.99 -77.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.232 kcal (2) G-P(sol) polarization free energy of solvation -79.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds