Wall clock time and date at job start Mon Mar 30 2020 01:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99601 * 2 1 4 4 C 1.52997 * 109.47115 * 60.00411 * 3 2 1 5 5 C 1.52995 * 109.47222 * 299.99974 * 3 2 1 6 6 C 1.53004 * 109.46949 * 180.02562 * 3 2 1 7 7 H 1.09001 * 109.87328 * 301.97989 * 6 3 2 8 8 C 1.54319 * 109.88134 * 180.80821 * 6 3 2 9 9 C 1.55156 * 102.94048 * 218.38849 * 8 6 3 10 10 C 1.54692 * 101.67674 * 35.33754 * 9 8 6 11 11 N 1.47021 * 109.88405 * 63.00002 * 6 3 2 12 12 S 1.65606 * 125.64416 * 298.32282 * 11 6 3 13 13 O 1.42106 * 106.39856 * 206.70034 * 12 11 6 14 14 O 1.42102 * 106.40500 * 339.61977 * 12 11 6 15 15 C 1.76196 * 107.21991 * 93.16241 * 12 11 6 16 16 H 1.07997 * 120.00065 * 356.66736 * 15 12 11 17 17 C 1.37879 * 119.99969 * 176.66660 * 15 12 11 18 18 N 1.31515 * 120.00150 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99792 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47278 * 90.00118 * 19 17 15 21 21 H 1.48500 * 109.47107 * 209.99916 * 19 17 15 22 22 H 1.48499 * 109.47370 * 329.99736 * 19 17 15 23 23 H 1.09003 * 109.47319 * 60.00172 * 1 2 3 24 24 H 1.09004 * 109.46858 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47178 * 299.99525 * 1 2 3 26 26 H 1.09001 * 109.47271 * 174.23154 * 4 3 2 27 27 H 1.08998 * 109.46760 * 294.23306 * 4 3 2 28 28 H 1.09000 * 109.47381 * 54.22598 * 4 3 2 29 29 H 1.08996 * 109.47419 * 293.19507 * 5 3 2 30 30 H 1.08998 * 109.47236 * 53.19869 * 5 3 2 31 31 H 1.09008 * 109.46915 * 173.19441 * 5 3 2 32 32 H 1.08997 * 110.72191 * 336.74779 * 8 6 3 33 33 H 1.08999 * 110.71954 * 100.02843 * 8 6 3 34 34 H 1.09001 * 111.00676 * 153.57782 * 9 8 6 35 35 H 1.08996 * 111.00931 * 277.38812 * 9 8 6 36 36 H 1.09007 * 110.38762 * 204.36452 * 10 9 8 37 37 H 1.08990 * 110.23796 * 82.11701 * 10 9 8 38 38 H 0.97001 * 119.99986 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1848 -0.0006 7 1 3.8623 0.6142 0.8686 8 6 4.1731 2.5899 0.0198 9 6 5.3967 2.4299 -0.9207 10 6 4.8485 1.4484 -1.9833 11 7 3.9839 0.5198 -1.2328 12 16 3.5887 -1.0199 -1.6972 13 8 4.6503 -1.4739 -2.5257 14 8 3.1758 -1.7006 -0.5202 15 6 2.1660 -0.9043 -2.7301 16 1 1.6974 0.0541 -2.8986 17 6 1.6508 -2.0373 -3.3234 18 7 2.2211 -3.2044 -3.1178 19 14 0.1420 -1.9147 -4.4179 20 1 0.5662 -1.6744 -5.8206 21 1 -0.6275 -3.1826 -4.3438 22 1 -0.7121 -0.7899 -3.9593 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.0809 3.0200 1.3024 27 1 0.4842 2.2403 1.1992 28 1 1.7894 1.4746 2.1362 29 1 1.9819 1.5912 -2.1350 30 1 0.4707 2.0464 -1.3122 31 1 1.9018 3.0978 -1.1903 32 1 3.4798 3.3338 -0.3726 33 1 4.4934 2.8534 1.0278 34 1 5.6703 3.3838 -1.3717 35 1 6.2431 1.9941 -0.3901 36 1 5.6667 0.9059 -2.4571 37 1 4.2671 1.9880 -2.7308 38 1 1.8584 -4.0016 -3.5349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:24 Heat of formation + Delta-G solvation = -125.010848 kcal Electronic energy + Delta-G solvation = -22412.797769 eV Core-core repulsion = 19189.369407 eV Total energy + Delta-G solvation = -3223.428362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.40726 -36.78639 -34.90469 -33.66317 -32.90740 -32.18247 -30.24774 -27.87383 -27.06877 -26.12506 -25.81149 -22.16896 -21.15983 -19.21664 -18.32084 -17.22256 -16.26034 -16.14575 -15.51135 -14.91204 -14.54834 -14.34555 -13.83322 -13.56665 -13.07304 -13.06116 -12.94631 -12.62290 -12.13722 -11.91148 -11.81792 -11.59203 -11.47868 -11.19653 -11.13440 -10.84497 -10.70016 -10.59986 -10.50268 -10.40919 -10.13176 -9.99314 -9.93188 -9.78068 -9.09312 -8.82090 -8.64816 -7.97730 -6.51993 -5.06711 2.48727 3.12050 3.19107 3.24311 4.16375 4.28365 4.71510 4.80193 4.90302 5.14825 5.26512 5.31989 5.40415 5.46581 5.70875 5.76618 5.81794 5.88847 5.94373 5.97737 5.99815 6.07171 6.11904 6.17668 6.26671 6.31618 6.39812 6.47080 6.47545 6.53024 6.61348 6.75114 7.11718 7.52193 7.75130 8.00182 8.19333 9.07713 10.41922 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.010142 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.882666 B = 2760.266716 C = 3414.838146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.332 6.332 3 C 0.087 3.913 4 C -0.173 4.173 5 C -0.183 4.183 6 C 0.173 3.827 7 H 0.076 0.924 8 C -0.125 4.125 9 C -0.130 4.130 10 C 0.118 3.882 11 N -1.012 6.012 12 S 2.729 3.271 13 O -1.014 7.014 14 O -0.981 6.981 15 C -0.996 4.996 16 H 0.101 0.899 17 C 0.135 3.865 18 N -0.851 5.851 19 Si 0.911 3.089 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.265 1.265 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 13.155 5.187 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.250 6.250 3 C 0.045 3.955 4 C -0.231 4.231 5 C -0.240 4.240 6 C 0.066 3.934 7 H 0.094 0.906 8 C -0.163 4.163 9 C -0.169 4.169 10 C -0.008 4.008 11 N -0.846 5.846 12 S 2.831 3.169 13 O -1.005 7.005 14 O -0.972 6.972 15 C -1.130 5.130 16 H 0.119 0.881 17 C -0.081 4.081 18 N -0.482 5.482 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.189 1.189 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.256 11.912 5.399 13.081 hybrid contribution -1.663 0.568 -0.961 2.003 sum -1.919 12.480 4.438 13.384 Atomic orbital electron populations 1.22648 0.82848 1.02373 0.98392 1.88420 1.18281 1.23795 1.94455 1.21953 0.94189 0.85371 0.93956 1.22395 1.01465 1.00603 0.98682 1.22580 1.01425 0.99879 1.00130 1.21020 0.90485 0.93195 0.88730 0.90600 1.22764 0.97392 0.96046 1.00123 1.22733 0.97625 0.99284 0.97245 1.21792 0.93713 0.91242 0.94094 1.59305 1.62398 1.33092 1.29791 1.00099 0.74669 0.68422 0.73725 1.93344 1.59112 1.77920 1.70076 1.93370 1.83803 1.69329 1.50661 1.30604 1.34232 1.01130 1.47016 0.88052 1.24655 0.96605 0.93502 0.93353 1.69913 1.39178 0.99493 1.39622 0.86334 0.81364 0.78398 0.80367 1.19520 1.20241 1.18886 0.94339 0.90014 0.95334 0.91773 0.92422 0.91773 0.89786 0.92591 0.92422 0.90325 0.90717 0.90658 0.90991 0.90540 0.92490 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.22 101.05 1.03 1.65 16 2 O -0.33 -7.13 6.28 -57.27 -0.36 -7.49 16 3 C 0.09 1.50 0.64 -90.62 -0.06 1.44 16 4 C -0.17 -2.30 7.92 37.16 0.29 -2.00 16 5 C -0.18 -2.95 7.84 37.15 0.29 -2.65 16 6 C 0.17 3.05 2.47 -66.95 -0.17 2.88 16 7 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 8 C -0.12 -1.57 5.08 -24.90 -0.13 -1.69 16 9 C -0.13 -1.65 7.07 -24.70 -0.17 -1.82 16 10 C 0.12 2.01 7.05 -2.65 -0.02 1.99 16 11 N -1.01 -21.28 2.42 -104.56 -0.25 -21.53 16 12 S 2.73 75.44 4.46 -107.50 -0.48 74.96 16 13 O -1.01 -31.12 17.35 -57.17 -0.99 -32.11 16 14 O -0.98 -29.54 15.52 -66.25 -1.03 -30.56 16 15 C -1.00 -27.48 8.53 30.60 0.26 -27.22 16 16 H 0.10 2.57 5.40 -52.49 -0.28 2.28 16 17 C 0.14 3.82 5.46 -17.82 -0.10 3.72 16 18 N -0.85 -25.61 13.16 55.43 0.73 -24.88 16 19 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 23 H 0.04 0.67 6.27 -51.93 -0.33 0.34 16 24 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.03 0.42 6.55 -51.93 -0.34 0.08 16 26 H 0.06 0.69 6.82 -51.93 -0.35 0.34 16 27 H 0.06 0.71 6.86 -51.93 -0.36 0.35 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.57 4.70 -51.93 -0.24 1.32 16 30 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16 31 H 0.06 0.75 6.37 -51.92 -0.33 0.42 16 32 H 0.08 0.88 5.61 -51.93 -0.29 0.59 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.37 7.79 -51.93 -0.40 0.96 16 37 H 0.06 0.90 8.12 -51.93 -0.42 0.47 16 38 H 0.29 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -35.90 300.20 -6.99 -42.88 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.35 Total: 2.04 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 1.24 Total: -23.71 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.48 Total: -46.41 kcal Atomic # 8 Polarization: -67.79 SS G_CDS: -2.38 Total: -70.17 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 75.44 SS G_CDS: -0.48 Total: 74.96 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.90 -6.99 -42.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.127 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds