Wall clock time and date at job start Mon Mar 30 2020 01:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99601 * 2 1 4 4 C 1.52997 * 109.47115 * 60.00411 * 3 2 1 5 5 C 1.52995 * 109.47222 * 299.99974 * 3 2 1 6 6 C 1.53004 * 109.46949 * 180.02562 * 3 2 1 7 7 H 1.09001 * 109.87328 * 301.97989 * 6 3 2 8 8 C 1.54319 * 109.88134 * 180.80821 * 6 3 2 9 9 C 1.55156 * 102.94048 * 218.38849 * 8 6 3 10 10 C 1.54692 * 101.67674 * 35.33754 * 9 8 6 11 11 N 1.47021 * 109.88405 * 63.00002 * 6 3 2 12 12 S 1.65606 * 125.64416 * 298.32282 * 11 6 3 13 13 O 1.42106 * 106.39856 * 206.70034 * 12 11 6 14 14 O 1.42102 * 106.40500 * 339.61977 * 12 11 6 15 15 C 1.76196 * 107.21991 * 93.16241 * 12 11 6 16 16 H 1.07997 * 120.00065 * 356.66736 * 15 12 11 17 17 C 1.37879 * 119.99969 * 176.66660 * 15 12 11 18 18 N 1.31515 * 120.00150 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99792 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47278 * 90.00118 * 19 17 15 21 21 H 1.48500 * 109.47107 * 209.99916 * 19 17 15 22 22 H 1.48499 * 109.47370 * 329.99736 * 19 17 15 23 23 H 1.09003 * 109.47319 * 60.00172 * 1 2 3 24 24 H 1.09004 * 109.46858 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47178 * 299.99525 * 1 2 3 26 26 H 1.09001 * 109.47271 * 174.23154 * 4 3 2 27 27 H 1.08998 * 109.46760 * 294.23306 * 4 3 2 28 28 H 1.09000 * 109.47381 * 54.22598 * 4 3 2 29 29 H 1.08996 * 109.47419 * 293.19507 * 5 3 2 30 30 H 1.08998 * 109.47236 * 53.19869 * 5 3 2 31 31 H 1.09008 * 109.46915 * 173.19441 * 5 3 2 32 32 H 1.08997 * 110.72191 * 336.74779 * 8 6 3 33 33 H 1.08999 * 110.71954 * 100.02843 * 8 6 3 34 34 H 1.09001 * 111.00676 * 153.57782 * 9 8 6 35 35 H 1.08996 * 111.00931 * 277.38812 * 9 8 6 36 36 H 1.09007 * 110.38762 * 204.36452 * 10 9 8 37 37 H 1.08990 * 110.23796 * 82.11701 * 10 9 8 38 38 H 0.97001 * 119.99986 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1848 -0.0006 7 1 3.8623 0.6142 0.8686 8 6 4.1731 2.5899 0.0198 9 6 5.3967 2.4299 -0.9207 10 6 4.8485 1.4484 -1.9833 11 7 3.9839 0.5198 -1.2328 12 16 3.5887 -1.0199 -1.6972 13 8 4.6503 -1.4739 -2.5257 14 8 3.1758 -1.7006 -0.5202 15 6 2.1660 -0.9043 -2.7301 16 1 1.6974 0.0541 -2.8986 17 6 1.6508 -2.0373 -3.3234 18 7 2.2211 -3.2044 -3.1178 19 14 0.1420 -1.9147 -4.4179 20 1 0.5662 -1.6744 -5.8206 21 1 -0.6275 -3.1826 -4.3438 22 1 -0.7121 -0.7899 -3.9593 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.0809 3.0200 1.3024 27 1 0.4842 2.2403 1.1992 28 1 1.7894 1.4746 2.1362 29 1 1.9819 1.5912 -2.1350 30 1 0.4707 2.0464 -1.3122 31 1 1.9018 3.0978 -1.1903 32 1 3.4798 3.3338 -0.3726 33 1 4.4934 2.8534 1.0278 34 1 5.6703 3.3838 -1.3717 35 1 6.2431 1.9941 -0.3901 36 1 5.6667 0.9059 -2.4571 37 1 4.2671 1.9880 -2.7308 38 1 1.8584 -4.0016 -3.5349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:23 Heat of formation + Delta-G solvation = -152.665114 kcal Electronic energy + Delta-G solvation = -22413.996947 eV Core-core repulsion = 19189.369407 eV Total energy + Delta-G solvation = -3224.627541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71547 -38.17174 -37.15170 -35.92339 -35.05273 -33.49855 -31.56979 -29.18173 -28.39105 -27.74582 -27.49370 -23.54455 -22.32514 -20.86409 -20.11618 -18.92198 -18.18838 -17.56408 -16.93720 -16.86537 -16.03006 -15.81179 -15.67388 -15.45302 -14.50544 -14.45253 -14.24931 -13.97868 -13.79151 -13.41213 -13.14306 -13.00186 -12.92840 -12.74458 -12.62305 -12.36501 -12.31594 -12.24645 -12.00785 -11.94655 -11.93751 -11.76376 -11.60767 -11.17522 -11.13945 -10.72191 -10.19176 -9.60154 -8.61904 -7.26863 0.48261 1.32152 1.32877 1.47362 2.24034 2.68644 2.94046 3.16653 3.69835 3.85572 4.01584 4.06199 4.18548 4.21710 4.28397 4.49328 4.55908 4.64295 4.68738 4.74425 4.79971 4.83508 4.91984 4.99119 5.02496 5.08679 5.13837 5.17588 5.24261 5.27606 5.35637 5.43962 5.52952 5.68040 6.04035 6.11343 6.68886 6.92051 8.33337 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.010142 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.882666 B = 2760.266716 C = 3414.838146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.074 3.926 4 C -0.165 4.165 5 C -0.180 4.180 6 C 0.158 3.842 7 H 0.053 0.947 8 C -0.111 4.111 9 C -0.117 4.117 10 C 0.102 3.898 11 N -1.015 6.015 12 S 2.730 3.270 13 O -1.062 7.062 14 O -1.021 7.021 15 C -1.000 5.000 16 H 0.120 0.880 17 C 0.072 3.928 18 N -0.905 5.905 19 Si 0.979 3.021 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.245 1.245 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 17.010 5.367 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.033 3.967 4 C -0.223 4.223 5 C -0.237 4.237 6 C 0.052 3.948 7 H 0.071 0.929 8 C -0.149 4.149 9 C -0.156 4.156 10 C -0.023 4.023 11 N -0.853 5.853 12 S 2.834 3.166 13 O -1.052 7.052 14 O -1.012 7.012 15 C -1.134 5.134 16 H 0.138 0.862 17 C -0.139 4.139 18 N -0.538 5.538 19 Si 0.798 3.202 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.168 1.168 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.428 15.777 5.596 16.801 hybrid contribution -1.213 -0.584 -0.961 1.654 sum -2.641 15.193 4.635 16.102 Atomic orbital electron populations 1.22716 0.81925 1.01742 1.00202 1.88360 1.19723 1.27003 1.94885 1.22270 0.93530 0.84423 0.96450 1.22332 1.02587 1.01305 0.96049 1.22549 1.01633 1.01458 0.98075 1.21473 0.91674 0.95635 0.86067 0.92898 1.22821 0.97125 0.92837 1.02116 1.22747 0.97505 0.99603 0.95753 1.22166 0.92949 0.91413 0.95790 1.58673 1.63109 1.31915 1.31566 0.99530 0.74346 0.69781 0.72982 1.93272 1.60588 1.80192 1.71153 1.93305 1.84190 1.71926 1.51743 1.30819 1.34065 1.02021 1.46490 0.86237 1.25882 1.00216 0.92897 0.94917 1.70036 1.41507 1.00694 1.41519 0.85295 0.77106 0.79385 0.78365 1.18262 1.19318 1.16787 0.93858 0.92040 0.92032 0.88405 0.91219 0.92525 0.92874 0.92099 0.88646 0.87867 0.87560 0.86563 0.90958 0.92672 0.91013 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 10.22 113.37 1.16 2.25 16 2 O -0.38 -16.44 6.28 -127.90 -0.80 -17.24 16 3 C 0.07 2.40 0.64 -10.80 -0.01 2.39 16 4 C -0.17 -3.77 7.92 71.98 0.57 -3.20 16 5 C -0.18 -5.25 7.84 71.98 0.56 -4.69 16 6 C 0.16 5.34 2.47 45.34 0.11 5.45 16 7 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 8 C -0.11 -2.28 5.08 31.78 0.16 -2.12 16 9 C -0.12 -2.54 7.07 31.91 0.23 -2.32 16 10 C 0.10 3.38 7.05 86.78 0.61 4.00 16 11 N -1.01 -42.97 2.42 -484.70 -1.17 -44.15 16 12 S 2.73 157.39 4.46 -56.49 -0.25 157.14 16 13 O -1.06 -68.79 17.35 -128.00 -2.22 -71.01 16 14 O -1.02 -64.91 15.52 -119.33 -1.85 -66.77 16 15 C -1.00 -56.33 8.53 67.73 0.58 -55.75 16 16 H 0.12 6.08 5.40 -2.91 -0.02 6.06 16 17 C 0.07 4.12 5.46 84.66 0.46 4.59 16 18 N -0.90 -56.59 13.16 21.45 0.28 -56.31 16 19 Si 0.98 42.75 29.54 68.60 2.03 44.78 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.24 -9.79 7.11 99.48 0.71 -9.08 16 23 H 0.04 1.45 6.27 -2.39 -0.01 1.44 16 24 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.06 1.72 6.55 -2.39 -0.02 1.70 16 26 H 0.10 1.55 6.82 -2.39 -0.02 1.54 16 27 H 0.07 1.42 6.86 -2.39 -0.02 1.41 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.88 4.70 -2.39 -0.01 1.87 16 30 H 0.06 1.69 6.20 -2.39 -0.01 1.67 16 31 H 0.09 1.98 6.37 -2.38 -0.02 1.97 16 32 H 0.10 1.65 5.61 -2.39 -0.01 1.64 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 2.02 7.79 -2.38 -0.02 2.00 16 37 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 38 H 0.29 16.58 8.31 -92.71 -0.77 15.81 16 Total: -1.00 -84.42 300.20 1.51 -82.91 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.06 Total: 20.05 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 4.44 Total: -49.40 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -0.89 Total: -100.46 kcal Atomic # 8 Polarization: -150.15 SS G_CDS: -4.88 Total: -155.02 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 157.39 SS G_CDS: -0.25 Total: 157.14 kcal Total: -84.42 1.51 -82.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.755 kcal (2) G-P(sol) polarization free energy of solvation -84.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds