Wall clock time and date at job start Mon Mar 30 2020 01:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46846 * 2 1 4 4 H 1.08997 * 109.47674 * 55.00047 * 3 2 1 5 5 C 1.50704 * 109.47142 * 174.99937 * 3 2 1 6 6 H 1.07999 * 119.99793 * 114.43929 * 5 3 2 7 7 C 1.37878 * 120.00092 * 294.44419 * 5 3 2 8 8 N 1.31507 * 120.00075 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99641 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47369 * 90.00026 * 9 7 5 11 11 H 1.48499 * 109.47010 * 209.99736 * 9 7 5 12 12 H 1.48499 * 109.47521 * 329.99846 * 9 7 5 13 13 N 1.46896 * 109.47299 * 294.99840 * 3 2 1 14 14 C 1.47744 * 111.00165 * 173.43635 * 13 3 2 15 15 C 1.52168 * 87.54889 * 222.33290 * 14 13 3 16 16 C 1.47745 * 111.00228 * 77.06875 * 13 3 2 17 17 C 1.52446 * 117.12319 * 267.09651 * 15 14 13 18 18 C 1.53325 * 112.05782 * 226.51861 * 17 15 14 19 19 F 1.39899 * 109.59107 * 149.75759 * 18 17 15 20 20 F 1.39904 * 109.59191 * 270.05076 * 18 17 15 21 21 C 1.55265 * 109.02753 * 29.80494 * 18 17 15 22 22 S 1.82520 * 115.52164 * 141.09412 * 15 14 13 23 23 H 1.09003 * 109.46698 * 60.00109 * 1 2 3 24 24 H 1.09001 * 109.46753 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47033 * 299.99845 * 1 2 3 26 26 H 1.09001 * 109.47033 * 240.00155 * 2 1 3 27 27 H 1.08998 * 109.47059 * 119.99567 * 2 1 3 28 28 H 0.97003 * 119.99868 * 180.02562 * 8 7 5 29 29 H 1.09001 * 113.53579 * 337.00375 * 14 13 3 30 30 H 1.09000 * 113.53565 * 107.66513 * 14 13 3 31 31 H 1.09001 * 113.53841 * 252.34395 * 16 13 3 32 32 H 1.09004 * 113.53853 * 22.99560 * 16 13 3 33 33 H 1.09002 * 108.97090 * 347.19880 * 17 15 14 34 34 H 1.09003 * 108.97142 * 105.83300 * 17 15 14 35 35 H 1.09000 * 111.11628 * 77.02034 * 21 18 17 36 36 H 1.09000 * 111.11616 * 201.11041 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1505 1.8071 -0.6913 7 6 4.1391 0.9829 1.2777 8 7 5.4497 0.9841 1.3856 9 14 3.0864 0.3561 2.6878 10 1 2.8530 -1.1010 2.5216 11 1 3.7855 0.6017 3.9747 12 1 1.7838 1.0691 2.6881 13 7 1.6514 2.0992 -1.2552 14 6 1.9892 3.5373 -1.2270 15 6 0.6358 3.8009 -1.8707 16 6 0.2246 2.4822 -1.2328 17 6 0.5936 3.8806 -3.3925 18 6 -0.2109 5.0899 -3.8836 19 9 0.3030 5.5291 -5.1085 20 9 -1.5531 4.7280 -4.0408 21 6 -0.1027 6.2297 -2.8348 22 16 -0.2489 5.2779 -1.2647 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8698 0.6591 2.1973 29 1 2.0787 3.9437 -0.2196 30 1 2.8331 3.7987 -1.8654 31 1 -0.4021 1.8642 -1.8759 32 1 -0.1807 2.5927 -0.2270 33 1 1.6128 3.9553 -3.7718 34 1 0.1387 2.9701 -3.7825 35 1 0.8618 6.7333 -2.9003 36 1 -0.9221 6.9406 -2.9415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:14 Heat of formation + Delta-G solvation = -53.347990 kcal Electronic energy + Delta-G solvation = -20395.691687 eV Core-core repulsion = 17064.283344 eV Total energy + Delta-G solvation = -3331.408343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.15770 -47.18538 -40.17344 -35.17320 -33.18903 -32.00040 -29.42868 -27.87003 -25.78912 -25.06126 -22.83741 -21.97392 -20.23338 -19.12796 -17.75564 -17.44002 -16.92104 -16.71061 -15.91244 -14.95241 -14.85247 -14.64140 -14.14247 -14.01055 -13.63073 -13.50756 -13.19239 -13.03830 -12.90657 -12.56945 -12.49188 -12.19061 -11.84483 -11.67110 -11.51200 -11.26473 -10.89503 -10.76602 -10.56663 -10.14019 -10.05358 -9.90958 -9.47273 -9.15000 -8.64461 -8.16248 -7.83311 -6.16235 -4.16462 1.45969 1.99653 3.20272 3.28195 3.30530 3.31389 3.65675 4.05080 4.22216 4.31496 4.33823 4.60920 4.78826 4.98678 5.12376 5.14910 5.35125 5.53810 5.64186 5.71935 5.78901 5.84261 5.88516 6.00775 6.15113 6.19153 6.31859 6.53092 6.58498 6.73649 6.93804 7.27109 7.65459 7.70968 8.47844 8.90128 9.45003 10.96382 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.005266 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.717750 B = 5315.815050 C = 5524.768044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.011 0.989 5 C -0.510 4.510 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.877 3.123 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.266 1.266 13 N -0.448 5.448 14 C 0.047 3.953 15 C -0.051 4.051 16 C 0.026 3.974 17 C -0.139 4.139 18 C 0.289 3.711 19 F -0.192 7.192 20 F -0.187 7.187 21 C -0.120 4.120 22 S -0.240 6.240 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.949 7.621 -7.915 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.157 4.157 3 C 0.046 3.954 4 H 0.028 0.972 5 C -0.548 4.548 6 H 0.099 0.901 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.706 3.294 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.191 1.191 13 N -0.172 5.172 14 C -0.084 4.084 15 C -0.161 4.161 16 C -0.105 4.105 17 C -0.179 4.179 18 C 0.251 3.749 19 F -0.173 7.173 20 F -0.168 7.168 21 C -0.269 4.269 22 S -0.011 6.011 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.060 7.411 -7.240 15.899 hybrid contribution -0.290 -0.219 0.411 0.548 sum -12.350 7.191 -6.829 15.839 Atomic orbital electron populations 1.22229 0.98311 1.00589 1.01384 1.21835 0.92988 0.99283 1.01598 1.20334 0.97503 0.91253 0.86318 0.97176 1.20850 0.88368 1.43030 1.02541 0.90098 1.24901 0.94755 0.95155 0.98016 1.69873 1.08708 1.46769 1.27920 0.86971 0.80882 0.79623 0.81939 1.20204 1.21996 1.19051 1.69085 1.02520 1.09610 1.35957 1.23676 0.93120 0.90921 1.00699 1.24199 1.01618 0.95087 0.95173 1.23916 0.95633 0.90778 1.00152 1.22407 1.03335 0.97674 0.94444 1.22099 0.77511 0.93849 0.81471 1.93036 1.86812 1.90566 1.46864 1.93055 1.35100 1.92681 1.95924 1.25332 1.08730 0.99315 0.93485 1.88040 1.75651 1.17501 1.19866 0.91814 0.93922 0.93913 0.91386 0.92963 0.92496 0.89646 0.89246 0.88904 0.90620 0.86904 0.87098 0.86068 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.81 37.16 0.33 -2.52 16 2 C -0.12 -2.48 5.19 -26.73 -0.14 -2.62 16 3 C 0.15 3.44 0.91 -68.87 -0.06 3.37 16 4 H 0.01 0.25 6.25 -51.93 -0.32 -0.08 16 5 C -0.51 -13.62 8.67 -34.44 -0.30 -13.92 16 6 H 0.08 2.37 8.02 -52.49 -0.42 1.95 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.88 21.17 24.69 -169.99 -4.20 16.97 16 10 H -0.28 -6.52 6.86 56.52 0.39 -6.13 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.17 6.38 56.52 0.36 -5.81 16 13 N -0.45 -8.45 6.11 -238.18 -1.46 -9.90 16 14 C 0.05 0.80 6.41 -6.73 -0.04 0.76 16 15 C -0.05 -0.71 1.44 -91.77 -0.13 -0.85 16 16 C 0.03 0.40 4.63 -6.74 -0.03 0.37 16 17 C -0.14 -1.70 5.54 -26.85 -0.15 -1.85 16 18 C 0.29 3.36 2.25 -25.36 -0.06 3.30 16 19 F -0.19 -2.30 17.06 2.25 0.04 -2.26 16 20 F -0.19 -2.40 17.02 2.25 0.04 -2.37 16 21 C -0.12 -1.24 7.04 38.36 0.27 -0.97 16 22 S -0.24 -3.23 22.60 -107.50 -2.43 -5.66 16 23 H 0.06 0.98 4.61 -51.93 -0.24 0.74 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 26 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.05 1.17 4.02 -51.93 -0.21 0.96 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.09 1.59 7.82 -51.93 -0.41 1.19 16 30 H 0.09 1.49 7.90 -51.93 -0.41 1.08 16 31 H 0.09 1.31 6.57 -51.93 -0.34 0.97 16 32 H 0.08 1.24 7.21 -51.93 -0.37 0.86 16 33 H 0.11 1.32 7.72 -51.93 -0.40 0.92 16 34 H 0.11 1.32 7.72 -51.93 -0.40 0.92 16 35 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -28.68 295.01 -8.03 -36.71 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.83 Total: 0.80 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.41 Total: -12.96 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.68 Total: -35.68 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.08 Total: -4.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.20 Total: 16.97 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.43 Total: -5.66 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.68 -8.03 -36.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.640 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds