Wall clock time and date at job start Mon Mar 30 2020 01:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46846 * 2 1 4 4 H 1.08997 * 109.47674 * 55.00047 * 3 2 1 5 5 C 1.50704 * 109.47142 * 174.99937 * 3 2 1 6 6 H 1.07999 * 119.99793 * 114.43929 * 5 3 2 7 7 C 1.37878 * 120.00092 * 294.44419 * 5 3 2 8 8 N 1.31507 * 120.00075 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99641 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47369 * 90.00026 * 9 7 5 11 11 H 1.48499 * 109.47010 * 209.99736 * 9 7 5 12 12 H 1.48499 * 109.47521 * 329.99846 * 9 7 5 13 13 N 1.46896 * 109.47299 * 294.99840 * 3 2 1 14 14 C 1.47744 * 111.00165 * 173.43635 * 13 3 2 15 15 C 1.52168 * 87.54889 * 222.33290 * 14 13 3 16 16 C 1.47745 * 111.00228 * 77.06875 * 13 3 2 17 17 C 1.52446 * 117.12319 * 267.09651 * 15 14 13 18 18 C 1.53325 * 112.05782 * 226.51861 * 17 15 14 19 19 F 1.39899 * 109.59107 * 149.75759 * 18 17 15 20 20 F 1.39904 * 109.59191 * 270.05076 * 18 17 15 21 21 C 1.55265 * 109.02753 * 29.80494 * 18 17 15 22 22 S 1.82520 * 115.52164 * 141.09412 * 15 14 13 23 23 H 1.09003 * 109.46698 * 60.00109 * 1 2 3 24 24 H 1.09001 * 109.46753 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47033 * 299.99845 * 1 2 3 26 26 H 1.09001 * 109.47033 * 240.00155 * 2 1 3 27 27 H 1.08998 * 109.47059 * 119.99567 * 2 1 3 28 28 H 0.97003 * 119.99868 * 180.02562 * 8 7 5 29 29 H 1.09001 * 113.53579 * 337.00375 * 14 13 3 30 30 H 1.09000 * 113.53565 * 107.66513 * 14 13 3 31 31 H 1.09001 * 113.53841 * 252.34395 * 16 13 3 32 32 H 1.09004 * 113.53853 * 22.99560 * 16 13 3 33 33 H 1.09002 * 108.97090 * 347.19880 * 17 15 14 34 34 H 1.09003 * 108.97142 * 105.83300 * 17 15 14 35 35 H 1.09000 * 111.11628 * 77.02034 * 21 18 17 36 36 H 1.09000 * 111.11616 * 201.11041 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1505 1.8071 -0.6913 7 6 4.1391 0.9829 1.2777 8 7 5.4497 0.9841 1.3856 9 14 3.0864 0.3561 2.6878 10 1 2.8530 -1.1010 2.5216 11 1 3.7855 0.6017 3.9747 12 1 1.7838 1.0691 2.6881 13 7 1.6514 2.0992 -1.2552 14 6 1.9892 3.5373 -1.2270 15 6 0.6358 3.8009 -1.8707 16 6 0.2246 2.4822 -1.2328 17 6 0.5936 3.8806 -3.3925 18 6 -0.2109 5.0899 -3.8836 19 9 0.3030 5.5291 -5.1085 20 9 -1.5531 4.7280 -4.0408 21 6 -0.1027 6.2297 -2.8348 22 16 -0.2489 5.2779 -1.2647 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8698 0.6591 2.1973 29 1 2.0787 3.9437 -0.2196 30 1 2.8331 3.7987 -1.8654 31 1 -0.4021 1.8642 -1.8759 32 1 -0.1807 2.5927 -0.2270 33 1 1.6128 3.9553 -3.7718 34 1 0.1387 2.9701 -3.7825 35 1 0.8618 6.7333 -2.9003 36 1 -0.9221 6.9406 -2.9415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:13 Heat of formation + Delta-G solvation = -72.519841 kcal Electronic energy + Delta-G solvation = -20396.523041 eV Core-core repulsion = 17064.283344 eV Total energy + Delta-G solvation = -3332.239697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.09737 -48.12797 -41.55752 -36.66651 -34.59727 -33.79237 -30.77358 -29.22975 -27.12322 -26.54357 -24.42987 -23.06517 -21.83207 -20.38023 -19.06931 -18.71048 -18.41786 -17.66163 -17.36142 -16.55304 -16.11942 -15.88082 -15.40225 -15.16693 -14.98814 -14.63122 -14.47455 -14.27303 -14.17454 -14.03132 -13.84544 -13.69594 -13.16061 -13.09115 -12.81742 -12.63202 -12.34374 -12.18577 -12.01531 -11.81539 -11.58230 -11.26062 -11.10553 -11.04823 -10.67919 -9.68261 -8.91482 -8.31846 -6.35262 0.45772 0.95598 1.27912 1.31910 1.40704 2.28374 2.36142 2.69038 2.94441 3.03628 3.22109 3.24918 3.35667 3.76163 3.95969 4.16509 4.28790 4.35184 4.37258 4.40255 4.50997 4.58126 4.58927 4.68344 4.76233 4.78769 4.86415 4.96563 5.13579 5.23656 5.33416 5.64181 5.71243 5.97695 6.48811 6.71316 7.29931 8.84473 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.005266 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.717750 B = 5315.815050 C = 5524.768044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C 0.161 3.839 4 H 0.002 0.998 5 C -0.507 4.507 6 H 0.040 0.960 7 C 0.018 3.982 8 N -0.944 5.944 9 Si 0.936 3.064 10 H -0.265 1.265 11 H -0.295 1.295 12 H -0.249 1.249 13 N -0.461 5.461 14 C 0.040 3.960 15 C -0.032 4.032 16 C 0.029 3.971 17 C -0.139 4.139 18 C 0.293 3.707 19 F -0.192 7.192 20 F -0.192 7.192 21 C -0.107 4.107 22 S -0.263 6.263 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.266 0.734 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 7.991 -8.498 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.158 4.158 3 C 0.052 3.948 4 H 0.019 0.981 5 C -0.545 4.545 6 H 0.058 0.942 7 C -0.180 4.180 8 N -0.585 5.585 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.223 1.223 12 H -0.173 1.173 13 N -0.184 5.184 14 C -0.091 4.091 15 C -0.142 4.142 16 C -0.101 4.101 17 C -0.178 4.178 18 C 0.255 3.745 19 F -0.173 7.173 20 F -0.173 7.173 21 C -0.255 4.255 22 S -0.033 6.033 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.745 7.786 -7.842 18.427 hybrid contribution 0.586 -0.236 0.475 0.790 sum -14.160 7.550 -7.367 17.657 Atomic orbital electron populations 1.22154 0.94819 1.02373 1.02354 1.21747 0.96111 0.97470 1.00482 1.20125 0.94276 0.92747 0.87684 0.98059 1.21104 0.90889 1.41464 1.01048 0.94166 1.25697 0.95750 0.95706 1.00834 1.70021 1.10686 1.48867 1.28892 0.86002 0.79758 0.79687 0.78339 1.19058 1.22264 1.17295 1.69007 1.05139 1.10475 1.33818 1.23639 0.95183 0.90209 1.00055 1.23855 0.99004 0.95144 0.96235 1.23939 0.93717 0.91866 1.00625 1.22407 1.03997 0.98615 0.92831 1.22034 0.77007 0.93854 0.81616 1.93042 1.86802 1.90510 1.46923 1.93050 1.35508 1.92777 1.95975 1.25469 1.10715 0.98807 0.90555 1.88142 1.75008 1.17861 1.22288 0.90228 0.91781 0.93586 0.92153 0.94498 0.92521 0.91633 0.89642 0.86740 0.90983 0.86444 0.86342 0.84335 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 8.81 71.98 0.63 -4.29 16 2 C -0.12 -4.84 5.19 30.59 0.16 -4.69 16 3 C 0.16 7.13 0.91 44.17 0.04 7.17 16 4 H 0.00 0.09 6.25 -2.39 -0.01 0.07 16 5 C -0.51 -27.95 8.67 25.60 0.22 -27.72 16 6 H 0.04 2.48 8.02 -2.91 -0.02 2.46 16 7 C 0.02 1.03 5.45 84.66 0.46 1.49 16 8 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 9 Si 0.94 43.96 24.69 68.60 1.69 45.65 16 10 H -0.26 -11.91 6.86 99.48 0.68 -11.23 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 12 H -0.25 -10.91 6.38 99.48 0.64 -10.28 16 13 N -0.46 -17.14 6.11 -907.48 -5.55 -22.69 16 14 C 0.04 1.38 6.41 83.96 0.54 1.92 16 15 C -0.03 -0.85 1.44 -11.53 -0.02 -0.87 16 16 C 0.03 0.83 4.63 83.95 0.39 1.22 16 17 C -0.14 -3.08 5.54 30.52 0.17 -2.91 16 18 C 0.29 5.96 2.25 31.48 0.07 6.03 16 19 F -0.19 -4.06 17.06 44.97 0.77 -3.29 16 20 F -0.19 -4.37 17.02 44.97 0.77 -3.60 16 21 C -0.11 -1.88 7.04 72.76 0.51 -1.37 16 22 S -0.26 -6.51 22.60 -56.49 -1.28 -7.79 16 23 H 0.08 2.18 4.61 -2.39 -0.01 2.17 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.04 1.59 4.02 -2.39 -0.01 1.58 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.07 2.50 7.82 -2.39 -0.02 2.49 16 30 H 0.09 2.93 7.90 -2.39 -0.02 2.91 16 31 H 0.11 2.85 6.57 -2.39 -0.02 2.84 16 32 H 0.07 2.20 7.21 -2.39 -0.02 2.19 16 33 H 0.12 2.52 7.72 -2.39 -0.02 2.50 16 34 H 0.12 2.48 7.72 -2.39 -0.02 2.46 16 35 H 0.14 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -63.27 295.01 0.87 -62.40 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.99 Total: 11.12 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 3.18 Total: -24.01 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -5.25 Total: -80.47 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 1.53 Total: -6.89 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.69 Total: 45.65 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.28 Total: -7.79 kcal Total: -63.27 0.87 -62.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.119 kcal (2) G-P(sol) polarization free energy of solvation -63.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds