Wall clock time and date at job start Mon Mar 30 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00260 * 2 1 4 4 C 1.50705 * 119.99604 * 179.97438 * 2 1 3 5 5 O 1.42896 * 109.47180 * 0.02562 * 4 2 1 6 6 N 1.41608 * 113.99494 * 179.97438 * 5 4 2 7 7 C 1.34779 * 119.99584 * 179.97438 * 6 5 4 8 8 O 1.21596 * 120.00069 * 0.02562 * 7 6 5 9 9 C 1.47528 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.39673 * 120.19792 * 0.02562 * 9 7 6 11 11 C 1.37825 * 119.92200 * 179.97438 * 10 9 7 12 12 C 1.38578 * 120.32268 * 0.02562 * 11 10 9 13 13 C 1.38027 * 120.39985 * 359.97438 * 12 11 10 14 14 C 1.38832 * 120.07573 * 359.97438 * 13 12 11 15 15 O 1.35513 * 120.16293 * 180.02562 * 14 13 12 16 16 C 1.34812 * 117.00302 * 354.39426 * 15 14 13 17 17 H 1.08009 * 119.99781 * 5.06923 * 16 15 14 18 18 C 1.38695 * 120.00269 * 185.06410 * 16 15 14 19 19 N 1.31515 * 120.00366 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00020 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47233 * 89.99881 * 20 18 16 22 22 H 1.48500 * 109.47028 * 210.00416 * 20 18 16 23 23 H 1.48508 * 109.46882 * 330.00125 * 20 18 16 24 24 H 1.07996 * 119.99969 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00440 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47173 * 269.99996 * 3 2 1 27 27 H 1.09005 * 109.46849 * 30.00034 * 3 2 1 28 28 H 1.09004 * 109.47354 * 149.99248 * 3 2 1 29 29 H 1.09003 * 109.47082 * 239.99757 * 4 2 1 30 30 H 1.09002 * 109.46766 * 120.00502 * 4 2 1 31 31 H 0.96989 * 120.00191 * 0.02562 * 6 5 4 32 32 H 1.08002 * 120.03432 * 0.24107 * 10 9 7 33 33 H 1.07992 * 119.83712 * 179.97438 * 11 10 9 34 34 H 1.08000 * 119.79619 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.96032 * 179.97438 * 13 12 11 36 36 H 0.96994 * 120.00177 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 8 1.1348 -2.3913 0.0005 6 7 1.7438 -3.6697 0.0004 7 6 0.9798 -4.7800 0.0008 8 8 -0.2323 -4.6840 0.0008 9 6 1.6142 -6.1119 0.0002 10 6 3.0062 -6.2271 -0.0003 11 6 3.5929 -7.4742 -0.0003 12 6 2.8083 -8.6165 -0.0005 13 6 1.4315 -8.5182 0.0000 14 6 0.8231 -7.2703 0.0011 15 8 -0.5284 -7.1717 0.0021 16 6 -1.2259 -8.3194 -0.1154 17 1 -0.7086 -9.2674 -0.1223 18 6 -2.6079 -8.2827 -0.2272 19 7 -3.2379 -7.1283 -0.2191 20 14 -3.5744 -9.8730 -0.3893 21 1 -3.9452 -10.3668 0.9613 22 1 -4.8059 -9.6253 -1.1812 23 1 -2.7402 -10.8913 -1.0769 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 2.2452 1.6197 -1.0277 27 1 1.4744 2.0647 0.5139 28 1 3.0159 1.1747 0.5140 29 1 2.6901 -1.3626 0.8906 30 1 2.6901 -1.3633 -0.8894 31 1 2.7107 -3.7463 0.0008 32 1 3.6220 -5.3398 0.0037 33 1 4.6693 -7.5617 -0.0011 34 1 3.2770 -9.5895 -0.0009 35 1 0.8269 -9.4131 -0.0005 36 1 -4.2043 -7.1026 -0.2977 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001300219722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:35 Heat of formation + Delta-G solvation = -28.696458 kcal Electronic energy + Delta-G solvation = -20731.867659 eV Core-core repulsion = 17377.171851 eV Total energy + Delta-G solvation = -3354.695808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26780 -39.91947 -38.66008 -38.03813 -36.06130 -34.34686 -33.54320 -31.33558 -30.59366 -28.10620 -27.54020 -27.25704 -24.76591 -23.15728 -21.83456 -20.20359 -19.85940 -19.07687 -18.68028 -17.89106 -16.88480 -16.49385 -16.23075 -16.16581 -15.87104 -15.77536 -15.33171 -15.06768 -15.01885 -14.40333 -14.25339 -14.01589 -13.55286 -13.49149 -13.02484 -12.71630 -12.54483 -12.52369 -12.35721 -12.33825 -12.22555 -12.11741 -11.45684 -10.83999 -10.77655 -10.17078 -9.96745 -9.77425 -9.06198 -8.44664 -6.16756 0.07588 0.71596 0.83363 1.16466 1.32973 1.45033 1.52773 2.02687 2.16163 2.86566 3.20178 3.40256 3.48740 3.72565 3.85241 4.05465 4.18301 4.22526 4.28695 4.30011 4.50116 4.61669 4.67579 4.84608 4.92294 4.98425 5.06173 5.10853 5.11918 5.45019 5.55443 5.57039 5.64148 5.69074 5.92457 5.96747 6.15100 6.47740 6.94006 7.44016 7.78722 8.75891 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.004672 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.153957 B = 5992.252152 C = 7592.324931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.104 4.104 4 C 0.055 3.945 5 O -0.177 6.177 6 N -0.584 5.584 7 C 0.560 3.440 8 O -0.559 6.559 9 C -0.235 4.235 10 C -0.029 4.029 11 C -0.196 4.196 12 C -0.035 4.035 13 C -0.254 4.254 14 C 0.152 3.848 15 O -0.191 6.191 16 C -0.428 4.428 17 H 0.112 0.888 18 C -0.024 4.024 19 N -0.907 5.907 20 Si 1.024 2.976 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.245 1.245 24 H 0.121 0.879 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.423 0.577 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.127 0.873 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.482 7.295 0.116 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.134 4.134 3 C -0.161 4.161 4 C -0.021 4.021 5 O -0.182 6.182 6 N -0.290 5.290 7 C 0.351 3.649 8 O -0.436 6.436 9 C -0.240 4.240 10 C -0.047 4.047 11 C -0.214 4.214 12 C -0.053 4.053 13 C -0.273 4.273 14 C 0.097 3.903 15 O -0.093 6.093 16 C -0.504 4.504 17 H 0.129 0.871 18 C -0.223 4.223 19 N -0.542 5.542 20 Si 0.842 3.158 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.168 1.168 24 H 0.139 0.861 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.268 0.732 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.175 0.825 35 H 0.144 0.856 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.029 7.701 0.120 18.690 hybrid contribution -0.742 -0.334 -0.036 0.815 sum 16.287 7.367 0.084 17.876 Atomic orbital electron populations 1.23788 0.96458 1.01857 1.01264 1.21822 0.95402 0.94861 1.01340 1.20794 1.00429 0.91301 1.03575 1.22090 0.92613 0.83780 1.03605 1.90617 1.25505 1.04553 1.97556 1.47112 1.08259 0.94494 1.79150 1.18687 0.86513 0.83428 0.76297 1.90951 1.16216 1.86488 1.49948 1.18882 0.94790 0.87914 1.22460 1.21332 0.89704 1.00226 0.93444 1.21205 1.01421 0.90798 1.08019 1.21496 0.91272 1.00791 0.91728 1.21305 0.97200 0.95834 1.12992 1.20026 0.84534 0.94351 0.91408 1.84187 1.13550 1.34252 1.77336 1.22096 0.90189 0.84966 1.53139 0.87128 1.26829 0.96917 1.03077 0.95466 1.70341 1.09528 1.27822 1.46554 0.84533 0.77177 0.74812 0.79232 1.18602 1.19902 1.16785 0.86107 0.91252 0.89937 0.90422 0.89818 0.88760 0.88826 0.73236 0.81947 0.81330 0.82461 0.85580 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.42 13.66 67.78 0.93 -4.50 16 2 C -0.13 -2.95 6.05 -16.49 -0.10 -3.05 16 3 C -0.10 -1.36 10.03 71.23 0.71 -0.65 16 4 C 0.06 1.26 6.63 71.24 0.47 1.73 16 5 O -0.18 -6.52 9.50 -21.45 -0.20 -6.72 16 6 N -0.58 -20.57 6.34 -175.81 -1.11 -21.68 16 7 C 0.56 27.06 7.91 86.69 0.69 27.75 16 8 O -0.56 -35.70 15.57 24.36 0.38 -35.32 16 9 C -0.24 -10.23 5.89 -19.99 -0.12 -10.35 16 10 C -0.03 -0.82 9.54 22.52 0.21 -0.61 16 11 C -0.20 -4.82 10.03 22.25 0.22 -4.60 16 12 C -0.03 -1.02 10.03 22.30 0.22 -0.79 16 13 C -0.25 -10.56 9.16 22.36 0.20 -10.36 16 14 C 0.15 7.84 6.66 22.91 0.15 7.99 16 15 O -0.19 -12.32 7.84 0.94 0.01 -12.32 16 16 C -0.43 -26.06 9.49 67.93 0.64 -25.42 16 17 H 0.11 5.95 5.21 -2.91 -0.02 5.93 16 18 C -0.02 -1.43 5.49 84.85 0.47 -0.96 16 19 N -0.91 -60.61 13.67 21.62 0.30 -60.31 16 20 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.24 -9.58 7.11 99.48 0.71 -8.87 16 24 H 0.12 2.68 8.04 -2.91 -0.02 2.65 16 25 H 0.07 2.55 6.84 -2.91 -0.02 2.53 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 0.92 8.06 -2.38 -0.02 0.90 16 28 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.42 9.79 6.57 -92.72 -0.61 9.18 16 32 H 0.16 2.89 6.40 -2.91 -0.02 2.87 16 33 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.13 5.30 5.64 -2.91 -0.02 5.29 16 36 H 0.27 16.58 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -94.20 318.09 6.61 -87.59 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.50 Total: 26.00 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.71 Total: -23.82 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -0.82 Total: -81.99 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: 0.18 Total: -54.36 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -94.20 6.61 -87.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001300219722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.897 kcal (2) G-P(sol) polarization free energy of solvation -94.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds