Wall clock time and date at job start Mon Mar 30 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46979 * 2 1 4 4 S 1.81401 * 109.46766 * 179.97438 * 3 2 1 5 5 O 1.42096 * 108.58105 * 65.51312 * 4 3 2 6 6 O 1.42104 * 108.57631 * 294.48367 * 4 3 2 7 7 C 1.81408 * 101.92100 * 180.02562 * 4 3 2 8 8 C 1.52994 * 109.47029 * 179.97438 * 7 4 3 9 9 N 1.46904 * 109.47076 * 179.97438 * 8 7 4 10 10 C 1.47960 * 110.99975 * 190.00073 * 9 8 7 11 11 C 1.53940 * 86.18020 * 222.41827 * 10 9 8 12 12 O 1.42900 * 113.73337 * 269.26005 * 11 10 9 13 13 C 1.50694 * 113.73364 * 138.08016 * 11 10 9 14 14 H 1.08000 * 120.00563 * 1.89939 * 13 11 10 15 15 C 1.37885 * 119.99902 * 181.90102 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.48189 * 111.06803 * 90.56485 * 9 8 7 22 22 H 1.09001 * 109.47393 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47122 * 300.00064 * 1 2 3 24 24 H 1.08999 * 109.46741 * 60.00014 * 1 2 3 25 25 H 1.09000 * 109.47122 * 239.99936 * 2 1 3 26 26 H 1.08999 * 109.46741 * 119.99986 * 2 1 3 27 27 H 1.09000 * 109.47246 * 60.00012 * 3 2 1 28 28 H 1.08999 * 109.47372 * 299.99599 * 3 2 1 29 29 H 1.08994 * 109.46999 * 59.99750 * 7 4 3 30 30 H 1.08995 * 109.46431 * 299.99825 * 7 4 3 31 31 H 1.09003 * 109.47110 * 59.99987 * 8 7 4 32 32 H 1.09005 * 109.47409 * 300.00116 * 8 7 4 33 33 H 1.09000 * 113.75922 * 108.10132 * 10 9 8 34 34 H 1.08996 * 113.85941 * 336.74802 * 10 9 8 35 35 H 0.96699 * 113.99865 * 178.10203 * 12 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 37 37 H 1.08996 * 113.76245 * 23.24297 * 21 9 8 38 38 H 1.08999 * 113.82580 * 251.80952 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 0.0008 5 8 4.3073 0.8840 -1.2247 6 8 4.3062 0.8843 1.2269 7 6 4.2288 3.2174 0.0015 8 6 5.7455 3.4183 0.0028 9 7 6.0490 4.8557 0.0027 10 6 7.4898 5.0933 -0.2359 11 6 7.3921 6.1584 0.8713 12 8 7.0743 7.4645 0.3865 13 6 8.5608 6.1533 1.8226 14 1 9.3780 5.4638 1.6704 15 6 8.5868 7.0288 2.8875 16 7 7.5919 7.8688 3.0726 17 14 10.0352 7.0219 4.0671 18 1 9.8230 8.0501 5.1174 19 1 10.1517 5.6837 4.7001 20 1 11.2825 7.3270 3.3212 21 6 6.1711 5.3744 1.3855 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.8007 3.6787 0.8913 30 1 3.8015 3.6791 -0.8886 31 1 6.1739 2.9568 -0.8869 32 1 6.1725 2.9565 0.8931 33 1 7.7099 5.5034 -1.2215 34 1 8.1252 4.2468 0.0240 35 1 6.9835 8.1307 1.0815 36 1 7.6100 8.4845 3.8219 37 1 6.4186 4.6093 2.1213 38 1 5.3397 6.0086 1.6929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307709541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:02 Heat of formation + Delta-G solvation = -93.668973 kcal Electronic energy + Delta-G solvation = -19905.918901 eV Core-core repulsion = 16683.849624 eV Total energy + Delta-G solvation = -3222.069276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.06976 -36.98750 -36.08240 -35.15547 -34.65989 -32.16156 -31.83596 -28.15012 -27.11893 -25.19138 -24.62803 -22.31667 -21.15490 -18.93703 -18.68121 -17.35327 -16.80792 -16.51616 -16.03414 -15.43950 -15.11263 -14.86824 -14.62963 -14.09698 -13.84811 -13.50796 -13.24771 -12.90151 -12.86117 -12.16071 -12.08466 -12.07056 -11.99835 -11.79034 -11.61571 -11.48001 -11.26463 -11.23465 -11.02548 -10.78882 -10.66669 -10.41714 -10.22830 -10.04978 -9.33635 -8.67397 -8.32352 -7.90724 -6.29137 -4.39068 -0.09656 2.70253 3.20623 3.25665 3.28584 3.49061 3.92847 4.23679 4.26646 4.44522 4.61116 4.77753 4.79492 4.89573 5.00193 5.05126 5.22450 5.28338 5.53438 5.59460 5.60490 5.64085 5.79672 5.81041 5.87961 6.09551 6.24753 6.35336 6.61783 6.96116 7.05874 7.29890 7.72574 7.84712 7.96398 8.62803 9.31174 9.57167 10.76912 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032590 B = 0.003689 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.953742 B = 7587.749131 C = 7735.231336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.614 4.614 4 S 2.412 3.588 5 O -0.941 6.941 6 O -0.939 6.939 7 C -0.592 4.592 8 C 0.028 3.972 9 N -0.472 5.472 10 C 0.007 3.993 11 C 0.246 3.754 12 O -0.571 6.571 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.904 3.096 18 H -0.285 1.285 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.018 4.018 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.388 0.612 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 -11.057 -4.223 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.743 4.743 4 S 2.596 3.404 5 O -0.938 6.938 6 O -0.936 6.936 7 C -0.723 4.723 8 C -0.102 4.102 9 N -0.196 5.196 10 C -0.122 4.122 11 C 0.204 3.796 12 O -0.382 6.382 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.731 3.269 18 H -0.210 1.210 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.147 4.147 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.284 -11.669 -5.122 17.700 hybrid contribution 0.512 0.609 1.815 1.981 sum -11.772 -11.060 -3.307 16.488 Atomic orbital electron populations 1.21730 0.94049 1.02238 1.02378 1.21268 0.98324 0.92090 1.03860 1.30368 1.26188 1.06063 1.11662 1.08201 0.78105 0.78728 0.75410 1.93571 1.78770 1.75870 1.45619 1.93587 1.78717 1.75862 1.45483 1.30232 1.06841 1.23193 1.11985 1.22294 0.90479 0.95334 1.02109 1.68588 1.19823 1.09956 1.21195 1.24179 0.88029 0.98684 1.01291 1.19719 0.90224 0.81248 0.88406 1.86042 1.92986 1.19798 1.39414 1.21615 1.05968 1.20305 1.09956 0.91596 1.25061 0.96224 0.94508 0.97289 1.69414 1.31168 1.21933 1.31286 0.86456 0.82351 0.77980 0.80088 1.21015 1.19987 1.19931 1.24906 1.01948 0.99360 0.88514 0.92007 0.92235 0.92269 0.90236 0.90210 0.84926 0.84934 0.85080 0.84531 0.90232 0.92542 0.90296 0.91341 0.75767 0.91853 0.91764 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.94 5.94 -26.73 -0.16 -1.10 16 3 C -0.61 -4.71 5.81 37.16 0.22 -4.49 16 4 S 2.41 27.93 4.72 -107.50 -0.51 27.43 16 5 O -0.94 -13.72 18.10 -57.83 -1.05 -14.77 16 6 O -0.94 -14.26 18.10 -57.83 -1.05 -15.31 16 7 C -0.59 -7.38 6.11 37.15 0.23 -7.16 16 8 C 0.03 0.47 4.81 -3.83 -0.02 0.45 16 9 N -0.47 -9.64 6.16 -238.02 -1.47 -11.11 16 10 C 0.01 0.15 7.34 -2.76 -0.02 0.13 16 11 C 0.25 6.16 1.40 -90.83 -0.13 6.03 16 12 O -0.57 -15.21 13.48 -35.23 -0.48 -15.69 16 13 C -0.54 -14.34 8.61 -34.44 -0.30 -14.63 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 16 N -0.90 -23.78 11.20 55.43 0.62 -23.16 16 17 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.02 -0.42 7.37 -2.63 -0.02 -0.43 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.14 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.06 0.96 7.39 -51.93 -0.38 0.58 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.07 1.39 7.88 -51.93 -0.41 0.98 16 35 H 0.39 10.46 6.60 45.56 0.30 10.76 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.06 1.45 7.44 -51.93 -0.39 1.06 16 38 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -32.82 328.36 -9.41 -42.23 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.49 Total: 10.14 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 0.07 Total: -20.01 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.85 Total: -34.27 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -2.57 Total: -45.76 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 27.93 SS G_CDS: -0.51 Total: 27.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.82 -9.41 -42.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307709541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.441 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds