Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 108.75143 * 2 1 4 4 C 1.53839 * 108.69475 * 241.71621 * 2 1 3 5 5 C 1.52910 * 115.30499 * 195.28303 * 4 2 1 6 6 N 1.45588 * 109.22700 * 318.38588 * 5 4 2 7 7 C 1.46905 * 110.99895 * 226.09671 * 6 5 4 8 8 C 1.53000 * 109.47123 * 305.87256 * 7 6 5 9 9 H 1.09002 * 109.47398 * 59.99875 * 8 7 6 10 10 O 1.42903 * 109.46726 * 299.99631 * 8 7 6 11 11 C 1.50699 * 109.47083 * 179.97438 * 8 7 6 12 12 H 1.08000 * 119.99792 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 C 1.47107 * 108.03980 * 104.18141 * 6 5 4 20 20 C 1.45738 * 115.32729 * 266.98401 * 19 6 5 21 21 S 1.80056 * 108.78663 * 118.33824 * 2 1 3 22 22 O 1.42102 * 108.59308 * 91.99978 * 21 2 1 23 23 O 1.42096 * 108.59553 * 320.92389 * 21 2 1 24 24 H 1.08998 * 109.47602 * 301.65588 * 1 2 3 25 25 H 1.09002 * 109.47633 * 61.65996 * 1 2 3 26 26 H 1.09005 * 109.47312 * 181.66185 * 1 2 3 27 27 H 1.08999 * 108.31917 * 316.79065 * 4 2 1 28 28 H 1.08996 * 108.32046 * 73.95849 * 4 2 1 29 29 H 1.08998 * 109.51139 * 198.45776 * 5 4 2 30 30 H 1.09002 * 109.51315 * 78.31387 * 5 4 2 31 31 H 1.08992 * 109.47078 * 185.86943 * 7 6 5 32 32 H 1.09004 * 109.46829 * 65.86589 * 7 6 5 33 33 H 0.96700 * 114.00234 * 300.00043 * 10 8 7 34 34 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 35 35 H 1.08999 * 108.31483 * 28.50210 * 19 6 5 36 36 H 1.09005 * 108.31184 * 145.65588 * 19 6 5 37 37 H 1.08997 * 109.44112 * 184.54539 * 20 19 6 38 38 H 1.09000 * 109.43945 * 304.46759 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8803 1.0321 0.0000 4 6 2.0231 -0.6905 -1.2833 5 6 3.4957 -1.1022 -1.2794 6 7 4.2890 -0.0398 -0.6780 7 6 5.4834 0.2460 -1.4841 8 6 6.2705 -1.0472 -1.7058 9 1 5.6433 -1.7691 -2.2289 10 8 6.6659 -1.5865 -0.4429 11 6 7.4954 -0.7541 -2.5332 12 1 7.6926 0.2537 -2.8678 13 6 8.3644 -1.7725 -2.8629 14 7 8.1240 -2.9997 -2.4559 15 14 9.8832 -1.4090 -3.8880 16 1 9.9243 0.0387 -4.2159 17 1 11.0991 -1.7766 -3.1188 18 1 9.8339 -2.2003 -5.1437 19 6 4.6592 -0.4617 0.6817 20 6 3.7531 -0.0278 1.7375 21 16 2.1098 -0.8091 1.5004 22 8 2.3002 -2.1903 1.2256 23 8 1.2659 -0.4254 2.5773 24 1 -0.3634 0.5393 0.8747 25 1 -0.3634 0.4878 -0.9045 26 1 -0.3634 -1.0273 0.0298 27 1 1.4185 -1.5827 -1.4462 28 1 1.8620 -0.0120 -2.1209 29 1 3.8293 -1.2707 -2.3033 30 1 3.6161 -2.0183 -0.7012 31 1 6.1105 0.9679 -0.9610 32 1 5.1817 0.6573 -2.4474 33 1 7.2274 -0.9965 0.0783 34 1 8.7352 -3.7163 -2.6882 35 1 4.7107 -1.5503 0.7005 36 1 5.6519 -0.0697 0.9035 37 1 4.1579 -0.3210 2.7062 38 1 3.6471 1.0564 1.7018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335944104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = -109.448121 kcal Electronic energy + Delta-G solvation = -21305.770820 eV Core-core repulsion = 18083.017308 eV Total energy + Delta-G solvation = -3222.753512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.97131 -36.78895 -35.90211 -35.55985 -34.30794 -32.21899 -31.90741 -29.45333 -27.46426 -24.56609 -23.65012 -22.60071 -21.61408 -19.60041 -18.50819 -17.17669 -16.89544 -16.41787 -15.89771 -15.08636 -14.80293 -14.68221 -14.59908 -14.25934 -13.88558 -13.29880 -13.25869 -12.94332 -12.85433 -12.28336 -12.12930 -11.93245 -11.88305 -11.73601 -11.30702 -11.23725 -11.03008 -11.02118 -10.87539 -10.65303 -10.48824 -10.13649 -9.99292 -9.88498 -9.53190 -8.72280 -8.66142 -7.53459 -6.08684 -4.28618 0.17973 2.84990 3.20791 3.29893 3.32274 3.75162 4.04695 4.27875 4.35171 4.56094 4.70410 4.99530 5.05987 5.16878 5.18525 5.35018 5.44780 5.51792 5.58058 5.79591 5.85259 5.92022 5.99284 6.04926 6.15273 6.18871 6.31640 6.43283 6.52964 6.73155 7.24260 7.36736 7.62484 7.75563 8.07995 8.73921 9.22524 9.48062 10.94500 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039089 B = 0.004863 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.139005 B = 5756.553833 C = 5960.440638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.559 4.559 3 H 0.139 0.861 4 C -0.077 4.077 5 C 0.014 3.986 6 N -0.531 5.531 7 C 0.026 3.974 8 C 0.195 3.805 9 H 0.061 0.939 10 O -0.562 6.562 11 C -0.575 4.575 12 H 0.057 0.943 13 C 0.080 3.920 14 N -0.857 5.857 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.045 3.955 20 C -0.570 4.570 21 S 2.403 3.597 22 O -0.935 6.935 23 O -0.956 6.956 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.343 0.657 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 7.256 5.005 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.669 4.669 3 H 0.157 0.843 4 C -0.116 4.116 5 C -0.115 4.115 6 N -0.254 5.254 7 C -0.101 4.101 8 C 0.137 3.863 9 H 0.079 0.921 10 O -0.366 6.366 11 C -0.613 4.613 12 H 0.075 0.925 13 C -0.127 4.127 14 N -0.493 5.493 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.084 4.084 20 C -0.700 4.700 21 S 2.586 3.414 22 O -0.932 6.932 23 O -0.953 6.953 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.187 0.813 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.345 6.367 5.331 14.878 hybrid contribution 2.185 0.675 -1.024 2.506 sum -10.160 7.042 4.307 13.090 Atomic orbital electron populations 1.21660 0.90710 1.03297 1.04239 1.29887 1.05319 1.14407 1.17331 0.84332 1.21284 0.96426 0.99903 0.94007 1.22639 0.91781 0.94286 1.02798 1.62658 1.21271 1.39423 1.02034 1.23171 0.89699 1.00412 0.96827 1.20086 0.93664 0.89713 0.82881 0.92093 1.86633 1.70117 1.47856 1.31956 1.21625 1.09078 0.94871 1.35724 0.92486 1.25048 0.97845 0.94946 0.94818 1.70078 1.36365 0.99865 1.42958 0.86623 0.83104 0.78503 0.80173 1.19711 1.20906 1.20874 1.20635 0.98150 1.01710 0.87929 1.28933 1.20443 1.13394 1.07256 1.08665 0.78432 0.77170 0.77103 1.93568 1.85474 1.29122 1.85079 1.93532 1.65377 1.84805 1.51607 0.90710 0.90394 0.91754 0.91154 0.90838 0.89550 0.90320 0.91453 0.90671 0.81277 0.92955 0.90162 0.89677 0.85010 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.75 37.16 0.33 -1.06 16 2 C -0.56 -6.30 2.51 -26.30 -0.07 -6.36 16 3 H 0.14 1.33 8.08 -51.73 -0.42 0.91 16 4 C -0.08 -0.96 4.96 -26.34 -0.13 -1.10 16 5 C 0.01 0.22 4.25 -4.58 -0.02 0.20 16 6 N -0.53 -8.24 4.34 -239.93 -1.04 -9.28 16 7 C 0.03 0.47 4.89 -3.82 -0.02 0.46 16 8 C 0.19 4.47 2.49 -27.88 -0.07 4.41 16 9 H 0.06 1.56 6.40 -51.93 -0.33 1.23 16 10 O -0.56 -13.04 9.78 -35.23 -0.34 -13.38 16 11 C -0.57 -14.83 8.76 -34.44 -0.30 -15.13 16 12 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.15 5.40 -17.82 -0.10 2.06 16 14 N -0.86 -24.56 12.84 55.43 0.71 -23.85 16 15 Si 0.89 20.50 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.04 0.67 3.24 -7.14 -0.02 0.65 16 20 C -0.57 -6.75 6.21 33.73 0.21 -6.54 16 21 S 2.40 32.15 4.72 -107.50 -0.51 31.64 16 22 O -0.94 -15.88 15.51 -57.83 -0.90 -16.77 16 23 O -0.96 -14.71 17.30 -57.83 -1.00 -15.71 16 24 H 0.07 0.70 7.74 -51.93 -0.40 0.30 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.84 7.97 -51.93 -0.41 0.42 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.45 6.41 -51.93 -0.33 1.12 16 30 H 0.08 1.40 5.43 -51.93 -0.28 1.12 16 31 H 0.07 1.18 7.88 -51.93 -0.41 0.77 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.34 7.08 8.17 45.56 0.37 7.45 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.08 1.41 5.52 -51.93 -0.29 1.13 16 36 H 0.08 1.27 6.14 -51.93 -0.32 0.95 16 37 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -32.45 301.46 -8.65 -41.10 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.90 Total: 8.66 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -0.19 Total: -22.42 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.33 Total: -33.13 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -2.24 Total: -45.86 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 32.15 SS G_CDS: -0.51 Total: 31.64 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.45 -8.65 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335944104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.347 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds