Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 108.75143 * 2 1 4 4 C 1.53839 * 108.69475 * 241.71621 * 2 1 3 5 5 C 1.52910 * 115.30499 * 195.28303 * 4 2 1 6 6 N 1.45588 * 109.22700 * 318.38588 * 5 4 2 7 7 C 1.46905 * 110.99895 * 226.09671 * 6 5 4 8 8 C 1.53000 * 109.47123 * 305.87256 * 7 6 5 9 9 H 1.09002 * 109.47398 * 59.99875 * 8 7 6 10 10 O 1.42903 * 109.46726 * 299.99631 * 8 7 6 11 11 C 1.50699 * 109.47083 * 179.97438 * 8 7 6 12 12 H 1.08000 * 119.99792 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 C 1.47107 * 108.03980 * 104.18141 * 6 5 4 20 20 C 1.45738 * 115.32729 * 266.98401 * 19 6 5 21 21 S 1.80056 * 108.78663 * 118.33824 * 2 1 3 22 22 O 1.42102 * 108.59308 * 91.99978 * 21 2 1 23 23 O 1.42096 * 108.59553 * 320.92389 * 21 2 1 24 24 H 1.08998 * 109.47602 * 301.65588 * 1 2 3 25 25 H 1.09002 * 109.47633 * 61.65996 * 1 2 3 26 26 H 1.09005 * 109.47312 * 181.66185 * 1 2 3 27 27 H 1.08999 * 108.31917 * 316.79065 * 4 2 1 28 28 H 1.08996 * 108.32046 * 73.95849 * 4 2 1 29 29 H 1.08998 * 109.51139 * 198.45776 * 5 4 2 30 30 H 1.09002 * 109.51315 * 78.31387 * 5 4 2 31 31 H 1.08992 * 109.47078 * 185.86943 * 7 6 5 32 32 H 1.09004 * 109.46829 * 65.86589 * 7 6 5 33 33 H 0.96700 * 114.00234 * 300.00043 * 10 8 7 34 34 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 35 35 H 1.08999 * 108.31483 * 28.50210 * 19 6 5 36 36 H 1.09005 * 108.31184 * 145.65588 * 19 6 5 37 37 H 1.08997 * 109.44112 * 184.54539 * 20 19 6 38 38 H 1.09000 * 109.43945 * 304.46759 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8803 1.0321 0.0000 4 6 2.0231 -0.6905 -1.2833 5 6 3.4957 -1.1022 -1.2794 6 7 4.2890 -0.0398 -0.6780 7 6 5.4834 0.2460 -1.4841 8 6 6.2705 -1.0472 -1.7058 9 1 5.6433 -1.7691 -2.2289 10 8 6.6659 -1.5865 -0.4429 11 6 7.4954 -0.7541 -2.5332 12 1 7.6926 0.2537 -2.8678 13 6 8.3644 -1.7725 -2.8629 14 7 8.1240 -2.9997 -2.4559 15 14 9.8832 -1.4090 -3.8880 16 1 9.9243 0.0387 -4.2159 17 1 11.0991 -1.7766 -3.1188 18 1 9.8339 -2.2003 -5.1437 19 6 4.6592 -0.4617 0.6817 20 6 3.7531 -0.0278 1.7375 21 16 2.1098 -0.8091 1.5004 22 8 2.3002 -2.1903 1.2256 23 8 1.2659 -0.4254 2.5773 24 1 -0.3634 0.5393 0.8747 25 1 -0.3634 0.4878 -0.9045 26 1 -0.3634 -1.0273 0.0298 27 1 1.4185 -1.5827 -1.4462 28 1 1.8620 -0.0120 -2.1209 29 1 3.8293 -1.2707 -2.3033 30 1 3.6161 -2.0183 -0.7012 31 1 6.1105 0.9679 -0.9610 32 1 5.1817 0.6573 -2.4474 33 1 7.2274 -0.9965 0.0783 34 1 8.7352 -3.7163 -2.6882 35 1 4.7107 -1.5503 0.7005 36 1 5.6519 -0.0697 0.9035 37 1 4.1579 -0.3210 2.7062 38 1 3.6471 1.0564 1.7018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335944104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = -136.459801 kcal Electronic energy + Delta-G solvation = -21306.942134 eV Core-core repulsion = 18083.017308 eV Total energy + Delta-G solvation = -3223.924826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33458 -37.98536 -37.13656 -36.94822 -35.50368 -34.22448 -33.14537 -30.74869 -29.03038 -26.18568 -24.74443 -23.73684 -23.14059 -20.98409 -19.57231 -19.08850 -17.98049 -17.58224 -17.02676 -16.68288 -16.33277 -16.22037 -16.02971 -15.59733 -15.26947 -14.79991 -14.25890 -14.23270 -13.91938 -13.57138 -13.24912 -13.13745 -13.05565 -12.94594 -12.94052 -12.87067 -12.67253 -12.28380 -12.23595 -11.98565 -11.84252 -11.78685 -11.31372 -11.12995 -10.85547 -10.70948 -10.53677 -9.08437 -8.11582 -6.38648 -0.85075 1.38627 1.41560 1.52150 1.84965 2.38495 2.74403 2.90410 3.12916 3.15765 3.63730 3.72126 3.96595 4.10434 4.18090 4.19924 4.25989 4.36182 4.51045 4.61749 4.69324 4.74154 4.85124 4.93957 5.01781 5.07811 5.16385 5.18568 5.21938 5.29480 5.59745 5.67056 5.90005 6.09042 6.18066 6.74984 7.34416 7.54327 8.90418 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039089 B = 0.004863 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.139005 B = 5756.553833 C = 5960.440638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.544 4.544 3 H 0.166 0.834 4 C -0.074 4.074 5 C 0.012 3.988 6 N -0.510 5.510 7 C 0.040 3.960 8 C 0.194 3.806 9 H 0.026 0.974 10 O -0.575 6.575 11 C -0.581 4.581 12 H 0.064 0.936 13 C 0.026 3.974 14 N -0.901 5.901 15 Si 0.955 3.045 16 H -0.260 1.260 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.045 3.955 20 C -0.560 4.560 21 S 2.395 3.605 22 O -0.982 6.982 23 O -0.979 6.979 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.354 0.646 34 H 0.259 0.741 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 9.982 4.805 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.657 4.657 3 H 0.184 0.816 4 C -0.113 4.113 5 C -0.117 4.117 6 N -0.232 5.232 7 C -0.088 4.088 8 C 0.136 3.864 9 H 0.043 0.957 10 O -0.380 6.380 11 C -0.620 4.620 12 H 0.082 0.918 13 C -0.177 4.177 14 N -0.539 5.539 15 Si 0.781 3.219 16 H -0.184 1.184 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.084 4.084 20 C -0.691 4.691 21 S 2.584 3.416 22 O -0.980 6.980 23 O -0.976 6.976 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.199 0.801 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.169 0.831 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.703 9.094 5.156 16.451 hybrid contribution 2.287 -0.174 -0.965 2.489 sum -10.416 8.920 4.191 14.339 Atomic orbital electron populations 1.21775 0.89283 1.03632 1.05778 1.29746 1.06512 1.14977 1.14431 0.81617 1.21234 0.93719 1.00834 0.95558 1.22616 0.94209 0.93584 1.01297 1.62804 1.19636 1.38838 1.01911 1.22925 0.90160 0.97757 0.97940 1.19994 0.92986 0.91118 0.82308 0.95658 1.86603 1.70537 1.48799 1.32024 1.22093 1.09681 0.94947 1.35267 0.91831 1.25875 1.00975 0.94751 0.96058 1.70224 1.37712 1.00917 1.45027 0.85575 0.79307 0.78739 0.78308 1.18434 1.20930 1.20965 1.20604 0.99490 0.99921 0.88392 1.28818 1.18081 1.15356 1.06853 1.08647 0.78827 0.76543 0.77625 1.93517 1.86215 1.32425 1.85808 1.93500 1.66186 1.84867 1.53019 0.90053 0.88016 0.92126 0.90917 0.88625 0.91133 0.93123 0.90013 0.90038 0.80094 0.93228 0.93465 0.89194 0.83143 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.75 71.98 0.63 -1.84 16 2 C -0.54 -10.82 2.51 30.88 0.08 -10.74 16 3 H 0.17 2.44 8.08 -2.52 -0.02 2.42 16 4 C -0.07 -1.73 4.96 30.85 0.15 -1.58 16 5 C 0.01 0.38 4.25 86.52 0.37 0.75 16 6 N -0.51 -15.05 4.34 -913.01 -3.96 -19.02 16 7 C 0.04 1.40 4.89 86.30 0.42 1.82 16 8 C 0.19 9.02 2.49 29.85 0.07 9.10 16 9 H 0.03 1.36 6.40 -2.39 -0.02 1.35 16 10 O -0.58 -27.16 9.78 -148.98 -1.46 -28.62 16 11 C -0.58 -29.85 8.76 25.60 0.22 -29.63 16 12 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 13 C 0.03 1.39 5.40 84.65 0.46 1.84 16 14 N -0.90 -52.86 12.84 21.45 0.28 -52.58 16 15 Si 0.96 42.06 29.54 68.60 2.03 44.09 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 C 0.04 1.30 3.24 84.04 0.27 1.58 16 20 C -0.56 -11.98 6.21 69.76 0.43 -11.55 16 21 S 2.40 61.77 4.72 -56.49 -0.27 61.51 16 22 O -0.98 -34.37 15.51 -127.38 -1.98 -36.35 16 23 O -0.98 -28.96 17.30 -127.38 -2.20 -31.16 16 24 H 0.08 1.30 7.74 -2.39 -0.02 1.28 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 1.67 7.97 -2.39 -0.02 1.65 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 2.44 6.41 -2.39 -0.02 2.43 16 30 H 0.05 1.91 5.43 -2.39 -0.01 1.89 16 31 H 0.08 2.64 7.88 -2.39 -0.02 2.62 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.35 14.61 8.17 -74.06 -0.61 14.00 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.05 1.71 5.52 -2.39 -0.01 1.70 16 36 H 0.09 2.53 6.14 -2.38 -0.01 2.51 16 37 H 0.15 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.16 2.40 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -71.33 301.46 -4.00 -75.32 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.46 Total: 27.06 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 3.11 Total: -40.26 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -3.69 Total: -71.60 kcal Atomic # 8 Polarization: -90.49 SS G_CDS: -5.64 Total: -96.12 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 61.77 SS G_CDS: -0.27 Total: 61.51 kcal Total: -71.33 -4.00 -75.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335944104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.136 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds