Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 108.75214 * 2 1 4 4 C 1.53846 * 108.78557 * 118.22884 * 2 1 3 5 5 C 1.52901 * 115.30831 * 164.77787 * 4 2 1 6 6 N 1.45596 * 109.22874 * 41.61500 * 5 4 2 7 7 C 1.46894 * 111.00006 * 133.90158 * 6 5 4 8 8 C 1.52996 * 109.47533 * 284.40622 * 7 6 5 9 9 H 1.09005 * 109.46835 * 55.00269 * 8 7 6 10 10 O 1.42897 * 109.47289 * 295.01223 * 8 7 6 11 11 C 1.50701 * 109.47603 * 175.00676 * 8 7 6 12 12 H 1.07997 * 119.99752 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99898 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00282 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99679 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47061 * 179.97438 * 15 13 11 17 17 H 1.48508 * 109.47403 * 300.00056 * 15 13 11 18 18 H 1.48498 * 109.47260 * 59.99580 * 15 13 11 19 19 C 1.47111 * 108.04033 * 255.82583 * 6 5 4 20 20 C 1.45727 * 115.32996 * 93.00834 * 19 6 5 21 21 S 1.80056 * 108.78742 * 241.65987 * 2 1 3 22 22 O 1.42100 * 108.59287 * 38.96771 * 21 2 1 23 23 O 1.42099 * 108.59270 * 267.88849 * 21 2 1 24 24 H 1.08997 * 109.47365 * 178.33826 * 1 2 3 25 25 H 1.09005 * 109.47254 * 298.34055 * 1 2 3 26 26 H 1.09006 * 109.47070 * 58.33770 * 1 2 3 27 27 H 1.09002 * 108.31686 * 286.29562 * 4 2 1 28 28 H 1.09006 * 108.31399 * 43.26608 * 4 2 1 29 29 H 1.08998 * 109.51258 * 281.68902 * 5 4 2 30 30 H 1.08998 * 109.51357 * 161.53636 * 5 4 2 31 31 H 1.09001 * 109.46914 * 164.40668 * 7 6 5 32 32 H 1.09006 * 109.47322 * 44.40660 * 7 6 5 33 33 H 0.96704 * 113.99473 * 301.12322 * 10 8 7 34 34 H 0.96996 * 120.00091 * 0.02562 * 14 13 11 35 35 H 1.09000 * 108.30873 * 214.53265 * 19 6 5 36 36 H 1.09002 * 108.31206 * 331.49093 * 19 6 5 37 37 H 1.09002 * 109.43905 * 55.58036 * 20 19 6 38 38 H 1.09001 * 109.43967 * 175.45722 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8804 1.0322 0.0000 4 6 2.0254 -0.6889 1.2833 5 6 3.4986 -1.0982 1.2784 6 7 4.2897 -0.0349 0.6757 7 6 5.4843 0.2533 1.4805 8 6 5.0820 1.0490 2.7238 9 1 4.3111 0.5048 3.2696 10 8 4.5748 2.3253 2.3291 11 6 6.2859 1.2390 3.6101 12 1 7.2423 0.8325 3.3162 13 6 6.1661 1.9308 4.7967 14 7 5.0013 2.4254 5.1548 15 14 7.6582 2.1657 5.8956 16 1 7.2677 2.9381 7.1023 17 1 8.1850 0.8390 6.3054 18 1 8.7086 2.9070 5.1524 19 6 4.6594 -0.4569 -0.6842 20 6 3.7516 -0.0253 -1.7394 21 16 2.1099 -0.8092 -1.5003 22 8 1.2644 -0.4274 -2.5767 23 8 2.3028 -2.1898 -1.2249 24 1 -0.3634 -1.0272 -0.0298 25 1 -0.3634 0.4879 0.9045 26 1 -0.3633 0.5395 -0.8747 27 1 1.8608 -0.0114 2.1212 28 1 1.4223 -1.5820 1.4473 29 1 3.6200 -2.0145 0.7007 30 1 3.8334 -1.2654 2.3021 31 1 6.1893 0.8367 0.8882 32 1 5.9525 -0.6830 1.7841 33 1 5.2028 2.8585 1.8226 34 1 4.2264 2.3032 4.5844 35 1 5.6526 -0.0664 -0.9059 36 1 4.7126 -1.5455 -0.7024 37 1 3.6446 1.0589 -1.7048 38 1 4.1560 -0.3185 -2.7082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335944105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -117.625561 kcal Electronic energy + Delta-G solvation = -21183.213131 eV Core-core repulsion = 17960.105019 eV Total energy + Delta-G solvation = -3223.108112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.88795 -36.90176 -36.03048 -35.79525 -34.70711 -32.14877 -32.00506 -29.52655 -27.41723 -24.27537 -23.68403 -22.76444 -21.34758 -20.20039 -18.63280 -17.42973 -17.03024 -16.57200 -16.02336 -15.47304 -14.95549 -14.89533 -14.19246 -14.13708 -13.78234 -13.43953 -13.37160 -13.04533 -12.83608 -12.42350 -12.29191 -12.08801 -12.04620 -11.92968 -11.82743 -11.35428 -11.14724 -11.06162 -10.84267 -10.62871 -10.21595 -10.16463 -10.10130 -9.96900 -9.38230 -8.53018 -8.28453 -7.96837 -6.41177 -4.25581 0.05934 2.72494 3.37898 3.38449 3.58017 3.62151 3.87823 4.10401 4.47307 4.55558 4.63530 4.77426 4.97365 5.00800 5.08831 5.29465 5.35713 5.43096 5.55656 5.66244 5.70957 5.76792 5.83187 5.91111 5.96005 6.04378 6.10615 6.25763 6.30454 6.51621 7.13439 7.23159 7.46483 7.94470 8.28480 8.80020 9.12531 9.61000 10.99187 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035869 B = 0.004847 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.425042 B = 5775.909965 C = 6075.734286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.554 4.554 3 H 0.145 0.855 4 C -0.076 4.076 5 C 0.016 3.984 6 N -0.522 5.522 7 C 0.037 3.963 8 C 0.223 3.777 9 H 0.050 0.950 10 O -0.572 6.572 11 C -0.655 4.655 12 H 0.048 0.952 13 C 0.037 3.963 14 N -0.891 5.891 15 Si 1.065 2.935 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.288 1.288 19 C 0.041 3.959 20 C -0.574 4.574 21 S 2.406 3.594 22 O -0.952 6.952 23 O -0.943 6.943 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.350 0.650 34 H 0.285 0.715 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.137 0.863 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 -5.222 -11.573 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.665 4.665 3 H 0.163 0.837 4 C -0.115 4.115 5 C -0.113 4.113 6 N -0.246 5.246 7 C -0.090 4.090 8 C 0.165 3.835 9 H 0.067 0.933 10 O -0.375 6.375 11 C -0.693 4.693 12 H 0.066 0.934 13 C -0.173 4.173 14 N -0.525 5.525 15 Si 0.894 3.106 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.214 1.214 19 C -0.088 4.088 20 C -0.703 4.703 21 S 2.590 3.410 22 O -0.949 6.949 23 O -0.940 6.940 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.194 0.806 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.932 -4.980 -10.377 12.522 hybrid contribution 1.059 -0.558 -1.293 1.762 sum -3.873 -5.538 -11.670 13.486 Atomic orbital electron populations 1.21660 0.90500 1.03136 1.04597 1.29836 1.05474 1.14830 1.16356 0.83733 1.21206 0.95433 1.00106 0.94783 1.22659 0.93332 0.93082 1.02231 1.62501 1.21958 1.39327 1.00857 1.23143 0.89337 0.99828 0.96697 1.19482 0.94395 0.81307 0.88282 0.93271 1.86481 1.44533 1.30660 1.75845 1.22427 0.96139 1.42286 1.08424 0.93395 1.25746 1.02213 0.92740 0.96556 1.70636 1.00924 1.40363 1.40558 0.83617 0.74399 0.76425 0.76197 1.20715 1.21485 1.21448 1.20599 0.99072 0.99588 0.89567 1.28857 1.20685 1.14473 1.06319 1.08547 0.78197 0.76929 0.77336 1.93544 1.64831 1.84720 1.51800 1.93527 1.85590 1.29545 1.85357 0.91884 0.90024 0.90635 0.89928 0.91287 0.91268 0.89582 0.91484 0.94351 0.80565 0.90330 0.90025 0.92503 0.84454 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.76 37.16 0.33 -1.21 16 2 C -0.55 -6.80 2.50 -26.29 -0.07 -6.87 16 3 H 0.14 1.73 8.08 -51.72 -0.42 1.31 16 4 C -0.08 -1.04 4.97 -26.34 -0.13 -1.17 16 5 C 0.02 0.24 4.83 -4.58 -0.02 0.21 16 6 N -0.52 -8.11 3.99 -239.94 -0.96 -9.07 16 7 C 0.04 0.68 4.24 -3.83 -0.02 0.67 16 8 C 0.22 5.19 2.47 -27.88 -0.07 5.12 16 9 H 0.05 1.25 6.91 -51.93 -0.36 0.89 16 10 O -0.57 -13.44 11.96 -35.23 -0.42 -13.87 16 11 C -0.65 -17.28 8.77 -34.44 -0.30 -17.59 16 12 H 0.05 1.25 7.74 -52.49 -0.41 0.84 16 13 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 14 N -0.89 -26.31 13.53 55.43 0.75 -25.56 16 15 Si 1.07 24.18 29.90 -169.99 -5.08 19.10 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.04 0.52 4.76 -7.14 -0.03 0.49 16 20 C -0.57 -6.15 6.21 33.72 0.21 -5.94 16 21 S 2.41 30.42 4.72 -107.50 -0.51 29.91 16 22 O -0.95 -14.22 17.30 -57.83 -1.00 -15.22 16 23 O -0.94 -14.25 15.51 -57.83 -0.90 -15.15 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.84 7.98 -51.93 -0.41 0.43 16 29 H 0.07 0.98 5.43 -51.93 -0.28 0.70 16 30 H 0.09 1.40 6.65 -51.93 -0.35 1.06 16 31 H 0.07 1.20 7.59 -51.93 -0.39 0.80 16 32 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16 33 H 0.35 7.44 9.04 45.56 0.41 7.85 16 34 H 0.28 8.53 6.47 -40.82 -0.26 8.26 16 35 H 0.08 0.98 7.30 -51.93 -0.38 0.60 16 36 H 0.06 0.71 6.39 -51.93 -0.33 0.38 16 37 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -32.98 307.11 -8.60 -41.57 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.91 Total: 9.02 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -0.20 Total: -25.37 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: -0.21 Total: -34.62 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -2.32 Total: -44.23 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.10 kcal Atomic # 16 Polarization: 30.42 SS G_CDS: -0.51 Total: 29.91 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.98 -8.60 -41.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335944105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.052 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds