Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00247 * 2 1 4 4 O 1.42904 * 109.47163 * 135.00122 * 3 2 1 5 5 N 1.41595 * 114.00377 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00188 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00124 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99954 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47027 * 179.97438 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97567 * 9 8 6 11 11 C 1.38280 * 120.13484 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.07150 * 359.67534 * 11 10 9 13 13 C 1.38861 * 119.92830 * 0.59673 * 12 11 10 14 14 O 1.35751 * 120.06597 * 179.69892 * 13 12 11 15 15 C 1.34829 * 117.00376 * 354.17384 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38657 * 120.00083 * 185.03464 * 15 14 13 18 18 N 1.31555 * 119.99797 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99748 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47410 * 90.00109 * 19 17 15 21 21 H 1.48504 * 109.46801 * 209.99865 * 19 17 15 22 22 H 1.48497 * 109.47495 * 329.99577 * 19 17 15 23 23 C 1.38073 * 119.96947 * 89.99413 * 9 8 6 24 24 H 1.08002 * 119.99549 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00330 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99549 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47007 * 15.00504 * 3 2 1 28 28 H 1.09000 * 109.47619 * 255.00258 * 3 2 1 29 29 H 0.97009 * 119.99697 * 0.02562 * 5 4 3 30 30 H 1.08993 * 109.47200 * 59.99691 * 8 6 5 31 31 H 1.09003 * 109.46989 * 299.99567 * 8 6 5 32 32 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 33 33 H 1.08007 * 119.96121 * 179.97438 * 11 10 9 34 34 H 1.08001 * 120.03709 * 180.32387 * 12 11 10 35 35 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.03594 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2412 0.9527 5 7 3.9008 2.4242 1.0322 6 6 4.9360 2.4957 1.8922 7 8 5.2044 1.5469 2.5984 8 6 5.7593 3.7551 1.9772 9 6 6.8454 3.5766 3.0067 10 6 6.6093 3.9180 4.3262 11 6 7.6035 3.7562 5.2736 12 6 8.8335 3.2467 4.9061 13 6 9.0754 2.9084 3.5812 14 8 10.2854 2.4131 3.2158 15 6 11.2469 2.3870 4.1606 16 1 11.0145 2.6737 5.1756 17 6 12.5341 1.9922 3.8292 18 7 13.4723 1.9672 4.7510 19 14 12.9361 1.4971 2.0734 20 1 13.3729 2.6932 1.3095 21 1 14.0266 0.4891 2.0808 22 1 11.7286 0.9153 1.4342 23 6 8.0751 3.0729 2.6318 24 1 -0.5399 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3856 2.1160 0.2661 28 1 2.4756 1.4868 -0.9926 29 1 3.6859 3.1832 0.4676 30 1 5.1193 4.5888 2.2656 31 1 6.2092 3.9613 1.0060 32 1 5.6466 4.3117 4.6171 33 1 7.4162 4.0241 6.3031 34 1 9.6078 3.1157 5.6475 35 1 14.3727 1.6907 4.5192 36 1 8.2590 2.8072 1.6012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449655892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -6.360155 kcal Electronic energy + Delta-G solvation = -20052.993503 eV Core-core repulsion = 16699.266269 eV Total energy + Delta-G solvation = -3353.727233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78024 -38.91670 -37.69606 -36.51650 -34.46639 -32.65789 -32.31749 -31.41484 -29.39711 -27.22363 -26.11720 -25.10611 -21.95682 -21.46768 -20.63648 -19.97101 -18.51921 -17.65540 -17.01508 -16.97009 -16.27703 -15.55949 -15.18029 -15.04160 -14.47627 -14.30088 -13.85475 -13.69401 -13.54982 -13.43988 -13.10084 -12.59218 -12.48106 -12.15794 -11.85482 -11.64555 -11.44010 -11.28426 -10.83276 -10.77986 -10.69152 -10.12343 -10.00208 -9.85985 -9.35171 -9.01191 -8.82910 -8.13597 -7.32426 -6.36686 -4.03244 1.38580 1.88417 2.23087 2.35084 2.69726 3.25750 3.28609 3.45011 4.22384 4.28343 4.43420 4.49160 4.58849 4.70489 4.83097 4.88034 4.99705 5.08257 5.15583 5.30495 5.39286 5.51413 5.70059 5.86798 6.07361 6.13474 6.14974 6.28234 6.54517 6.65129 6.81467 7.11736 7.18576 7.23250 7.35234 7.63944 7.85153 8.08774 8.28295 8.98861 9.61843 10.71148 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.003298 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.765108 B = 8487.206711 C = 9219.592536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.150 4.150 3 C 0.060 3.940 4 O -0.143 6.143 5 N -0.607 5.607 6 C 0.522 3.478 7 O -0.498 6.498 8 C -0.078 4.078 9 C -0.040 4.040 10 C -0.185 4.185 11 C -0.076 4.076 12 C -0.215 4.215 13 C 0.160 3.840 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.172 4.172 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.404 0.596 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.279 0.721 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.527 4.048 -10.613 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.017 4.017 4 O -0.147 6.147 5 N -0.312 5.312 6 C 0.309 3.691 7 O -0.368 6.368 8 C -0.118 4.118 9 C -0.040 4.040 10 C -0.204 4.204 11 C -0.095 4.095 12 C -0.234 4.234 13 C 0.108 3.892 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.191 4.191 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.140 0.860 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.244 0.756 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.940 3.019 -10.114 24.347 hybrid contribution -0.051 0.104 -1.043 1.049 sum -21.991 3.123 -11.157 24.857 Atomic orbital electron populations 1.23887 0.95312 1.02611 0.98941 1.22570 0.95608 0.97553 1.01228 1.21994 0.89107 0.97297 0.93308 1.90650 1.43315 1.19985 1.60745 1.47784 1.30146 1.08707 1.44543 1.21046 0.78529 0.90642 0.78904 1.90798 1.67018 1.37916 1.41110 1.20495 0.95882 0.94241 1.01179 1.18579 0.92353 0.99786 0.93326 1.20434 0.99017 1.08370 0.92612 1.20742 0.92904 0.97507 0.98305 1.21318 0.98699 1.06817 0.96568 1.18999 0.86193 0.91657 0.92367 1.83568 1.17427 1.71441 1.39966 1.20767 0.87700 1.46665 0.91240 0.87635 1.24455 0.93968 0.96123 0.99485 1.69648 1.02649 1.46108 1.33541 0.86186 0.78617 0.78766 0.83378 1.19926 1.20827 1.18336 1.19950 0.92726 1.07814 0.98626 0.88232 0.87311 0.86021 0.91690 0.91161 0.75637 0.87746 0.87703 0.87567 0.87070 0.84925 0.91120 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 14.31 29.01 0.42 -0.59 16 2 C -0.15 -1.16 9.89 -36.03 -0.36 -1.51 16 3 C 0.06 0.47 6.64 36.00 0.24 0.71 16 4 O -0.14 -1.83 11.09 -29.66 -0.33 -2.16 16 5 N -0.61 -6.68 6.39 31.22 0.20 -6.48 16 6 C 0.52 7.63 7.97 -10.99 -0.09 7.54 16 7 O -0.50 -10.25 16.44 -12.63 -0.21 -10.46 16 8 C -0.08 -0.93 5.83 -29.03 -0.17 -1.09 16 9 C -0.04 -0.69 4.37 -104.65 -0.46 -1.14 16 10 C -0.19 -3.22 9.70 -39.53 -0.38 -3.60 16 11 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 12 C -0.21 -4.82 9.17 -39.39 -0.36 -5.18 16 13 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 14 O -0.22 -5.95 8.59 0.05 0.00 -5.95 16 15 C -0.39 -11.20 9.95 30.89 0.31 -10.89 16 16 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 17 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 18 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 19 Si 0.90 22.13 28.62 -169.99 -4.86 17.27 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.17 -3.53 9.65 -39.40 -0.38 -3.91 16 24 H 0.10 0.46 7.90 -52.49 -0.41 0.05 16 25 H 0.11 0.52 8.06 -52.49 -0.42 0.09 16 26 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.06 0.39 7.86 -51.93 -0.41 -0.02 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.40 2.50 8.54 -40.82 -0.35 2.15 16 30 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 35 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -35.93 324.35 -5.79 -41.72 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.26 Total: 2.55 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.99 Total: -16.26 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.97 Total: -31.61 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.54 Total: -18.57 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.93 -5.79 -41.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449655892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.363 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds