Wall clock time and date at job start Mon Mar 30 2020 02:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00247 * 2 1 4 4 O 1.42904 * 109.47163 * 135.00122 * 3 2 1 5 5 N 1.41595 * 114.00377 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00188 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00124 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99954 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47027 * 179.97438 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97567 * 9 8 6 11 11 C 1.38280 * 120.13484 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.07150 * 359.67534 * 11 10 9 13 13 C 1.38861 * 119.92830 * 0.59673 * 12 11 10 14 14 O 1.35751 * 120.06597 * 179.69892 * 13 12 11 15 15 C 1.34829 * 117.00376 * 354.17384 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38657 * 120.00083 * 185.03464 * 15 14 13 18 18 N 1.31555 * 119.99797 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99748 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47410 * 90.00109 * 19 17 15 21 21 H 1.48504 * 109.46801 * 209.99865 * 19 17 15 22 22 H 1.48497 * 109.47495 * 329.99577 * 19 17 15 23 23 C 1.38073 * 119.96947 * 89.99413 * 9 8 6 24 24 H 1.08002 * 119.99549 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00330 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99549 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47007 * 15.00504 * 3 2 1 28 28 H 1.09000 * 109.47619 * 255.00258 * 3 2 1 29 29 H 0.97009 * 119.99697 * 0.02562 * 5 4 3 30 30 H 1.08993 * 109.47200 * 59.99691 * 8 6 5 31 31 H 1.09003 * 109.46989 * 299.99567 * 8 6 5 32 32 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 33 33 H 1.08007 * 119.96121 * 179.97438 * 11 10 9 34 34 H 1.08001 * 120.03709 * 180.32387 * 12 11 10 35 35 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.03594 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2412 0.9527 5 7 3.9008 2.4242 1.0322 6 6 4.9360 2.4957 1.8922 7 8 5.2044 1.5469 2.5984 8 6 5.7593 3.7551 1.9772 9 6 6.8454 3.5766 3.0067 10 6 6.6093 3.9180 4.3262 11 6 7.6035 3.7562 5.2736 12 6 8.8335 3.2467 4.9061 13 6 9.0754 2.9084 3.5812 14 8 10.2854 2.4131 3.2158 15 6 11.2469 2.3870 4.1606 16 1 11.0145 2.6737 5.1756 17 6 12.5341 1.9922 3.8292 18 7 13.4723 1.9672 4.7510 19 14 12.9361 1.4971 2.0734 20 1 13.3729 2.6932 1.3095 21 1 14.0266 0.4891 2.0808 22 1 11.7286 0.9153 1.4342 23 6 8.0751 3.0729 2.6318 24 1 -0.5399 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3856 2.1160 0.2661 28 1 2.4756 1.4868 -0.9926 29 1 3.6859 3.1832 0.4676 30 1 5.1193 4.5888 2.2656 31 1 6.2092 3.9613 1.0060 32 1 5.6466 4.3117 4.6171 33 1 7.4162 4.0241 6.3031 34 1 9.6078 3.1157 5.6475 35 1 14.3727 1.6907 4.5192 36 1 8.2590 2.8072 1.6012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449655892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:50 Heat of formation + Delta-G solvation = -31.165643 kcal Electronic energy + Delta-G solvation = -20054.069149 eV Core-core repulsion = 16699.266269 eV Total energy + Delta-G solvation = -3354.802880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12978 -40.38647 -38.72085 -38.06218 -35.13717 -34.47824 -33.79725 -32.54857 -31.04145 -28.43764 -27.20243 -26.75782 -23.44829 -22.87671 -21.78165 -20.77764 -19.71423 -19.37623 -18.65718 -18.01538 -17.06463 -16.85715 -16.65503 -16.21852 -15.83084 -15.70329 -15.42984 -15.33826 -14.85989 -14.40635 -14.19001 -14.11410 -13.91976 -13.80752 -13.03971 -12.88319 -12.53837 -12.45321 -12.35919 -12.32924 -12.09841 -11.92609 -11.30815 -11.09534 -10.89859 -10.51408 -9.92068 -9.67940 -9.05841 -8.49739 -6.22376 0.35945 0.70073 0.85848 1.30129 1.34618 1.41395 1.51796 1.63500 2.28465 2.76315 3.05404 3.11401 3.59229 3.70095 3.90806 4.03345 4.08440 4.09374 4.31102 4.34841 4.43744 4.51992 4.56282 4.64660 4.72056 4.93895 4.97326 5.25209 5.40120 5.57569 5.61879 5.65026 5.72827 5.77222 5.79240 5.92429 6.24817 6.38375 6.84595 7.33152 7.59722 8.62125 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.003298 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.765108 B = 8487.206711 C = 9219.592536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.181 4.181 3 C 0.058 3.942 4 O -0.181 6.181 5 N -0.585 5.585 6 C 0.522 3.478 7 O -0.572 6.572 8 C -0.071 4.071 9 C -0.033 4.033 10 C -0.168 4.168 11 C -0.080 4.080 12 C -0.239 4.239 13 C 0.116 3.884 14 O -0.247 6.247 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.267 1.267 22 H -0.267 1.267 23 C -0.179 4.179 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.430 0.570 30 H 0.157 0.843 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.107 0.893 35 H 0.285 0.715 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.188 5.810 -12.884 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.201 4.201 3 C -0.018 4.018 4 O -0.186 6.186 5 N -0.290 5.290 6 C 0.311 3.689 7 O -0.448 6.448 8 C -0.110 4.110 9 C -0.034 4.034 10 C -0.186 4.186 11 C -0.098 4.098 12 C -0.258 4.258 13 C 0.068 3.932 14 O -0.155 6.155 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.192 1.192 23 C -0.198 4.198 24 H 0.135 0.865 25 H 0.136 0.864 26 H 0.125 0.875 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.274 0.726 30 H 0.174 0.826 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.680 4.841 -12.432 28.938 hybrid contribution 0.645 -0.341 -0.318 0.796 sum -25.034 4.501 -12.750 28.452 Atomic orbital electron populations 1.24131 0.94685 1.03953 0.96135 1.22608 0.96366 0.97237 1.03867 1.22237 0.88403 0.98022 0.93174 1.90644 1.44654 1.20942 1.62407 1.47472 1.28866 1.09078 1.43564 1.21440 0.78811 0.90421 0.78272 1.90790 1.69246 1.40459 1.44320 1.20635 0.94682 0.94405 1.01317 1.19175 0.92398 0.96837 0.94991 1.21066 0.99935 1.05463 0.92132 1.21126 0.91702 0.96449 1.00503 1.21348 1.00008 1.08668 0.95819 1.19609 0.86077 0.93519 0.94026 1.83505 1.18389 1.74152 1.39452 1.20716 0.88875 1.47097 0.90904 0.90283 1.25293 0.93649 0.96253 1.03769 1.69732 1.03257 1.48018 1.35509 0.85202 0.78195 0.79032 0.78171 1.18513 1.19174 1.19190 1.20324 0.93222 1.07669 0.98582 0.86483 0.86355 0.87487 0.89404 0.89600 0.72634 0.82585 0.84226 0.83036 0.84146 0.87552 0.90578 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 14.31 67.78 0.97 -0.44 16 2 C -0.18 -2.51 9.89 25.64 0.25 -2.25 16 3 C 0.06 0.75 6.64 71.23 0.47 1.23 16 4 O -0.18 -4.26 11.09 -21.38 -0.24 -4.50 16 5 N -0.59 -10.73 6.39 -173.53 -1.11 -11.84 16 6 C 0.52 13.51 7.97 87.66 0.70 14.21 16 7 O -0.57 -22.87 16.44 14.37 0.24 -22.64 16 8 C -0.07 -1.31 5.83 29.10 0.17 -1.14 16 9 C -0.03 -1.05 4.37 -19.88 -0.09 -1.13 16 10 C -0.17 -5.20 9.70 22.30 0.22 -4.98 16 11 C -0.08 -2.92 10.04 22.25 0.22 -2.70 16 12 C -0.24 -11.22 9.17 22.39 0.21 -11.01 16 13 C 0.12 5.80 6.65 22.58 0.15 5.95 16 14 O -0.25 -14.16 8.59 -22.74 -0.20 -14.35 16 15 C -0.40 -24.60 9.95 67.92 0.68 -23.93 16 16 H 0.08 5.10 5.44 -2.91 -0.02 5.08 16 17 C 0.01 0.50 5.49 84.83 0.47 0.97 16 18 N -0.92 -56.82 13.96 21.61 0.30 -56.52 16 19 Si 0.97 47.05 28.62 68.60 1.96 49.02 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 23 C -0.18 -7.23 9.65 22.39 0.22 -7.02 16 24 H 0.12 0.66 7.90 -2.91 -0.02 0.64 16 25 H 0.12 0.84 8.06 -2.91 -0.02 0.82 16 26 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 27 H 0.09 0.72 7.86 -2.39 -0.02 0.70 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.43 3.16 8.54 -92.70 -0.79 2.37 16 30 H 0.16 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.14 1.73 8.09 -2.39 -0.02 1.71 16 32 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 35 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -85.89 324.35 5.90 -79.99 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.31 Total: 13.10 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 4.63 Total: -32.25 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.81 Total: -68.36 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.20 Total: -41.49 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.96 Total: 49.02 kcal Total: -85.89 5.90 -79.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449655892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.826 kcal (2) G-P(sol) polarization free energy of solvation -85.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds