Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00667 * 2 1 4 4 C 1.52992 * 109.47248 * 124.99974 * 3 2 1 5 5 O 1.42900 * 109.47231 * 179.97438 * 4 3 2 6 6 N 1.41598 * 114.00290 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00012 * 179.97438 * 6 5 4 8 8 O 1.21595 * 120.00050 * 0.02562 * 7 6 5 9 9 C 1.47539 * 119.99983 * 179.97438 * 7 6 5 10 10 C 1.39668 * 120.19435 * 0.02562 * 9 7 6 11 11 C 1.37826 * 119.91423 * 179.97438 * 10 9 7 12 12 C 1.38570 * 120.32914 * 0.02562 * 11 10 9 13 13 C 1.38027 * 120.39755 * 359.97438 * 12 11 10 14 14 C 1.38833 * 120.07578 * 359.97438 * 13 12 11 15 15 O 1.35513 * 120.16290 * 180.02562 * 14 13 12 16 16 C 1.34812 * 117.00369 * 354.38915 * 15 14 13 17 17 H 1.08009 * 119.99781 * 5.05977 * 16 15 14 18 18 C 1.38695 * 120.00269 * 185.05464 * 16 15 14 19 19 N 1.31525 * 120.00025 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00118 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47257 * 89.99919 * 20 18 16 22 22 H 1.48503 * 109.47018 * 209.99791 * 20 18 16 23 23 H 1.48502 * 109.46881 * 329.99507 * 20 18 16 24 24 H 1.07997 * 120.00640 * 180.02562 * 1 2 3 25 25 H 1.08009 * 119.99359 * 0.02562 * 1 2 3 26 26 H 1.08009 * 119.99359 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47077 * 4.99826 * 3 2 1 28 28 H 1.09003 * 109.46802 * 245.00349 * 3 2 1 29 29 H 1.09000 * 109.47202 * 59.99928 * 4 3 2 30 30 H 1.09003 * 109.47525 * 299.99932 * 4 3 2 31 31 H 0.97003 * 119.99996 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.04235 * 0.24935 * 10 9 7 33 33 H 1.08005 * 119.83468 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.80371 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.96271 * 180.02562 * 13 12 11 36 36 H 0.96994 * 120.00214 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7502 2.5701 1.1812 6 7 4.6803 2.6981 2.2411 7 6 5.4213 3.8181 2.3559 8 8 5.2907 4.7188 1.5495 9 6 6.3901 3.9516 3.4606 10 6 6.5430 2.9198 4.3894 11 6 7.4501 3.0505 5.4188 12 6 8.2121 4.2017 5.5381 13 6 8.0718 5.2296 4.6276 14 6 7.1638 5.1152 3.5836 15 8 7.0249 6.1230 2.6885 16 6 7.7119 7.2571 2.9322 17 1 8.4000 7.3036 3.7633 18 6 7.5350 8.3641 2.1156 19 7 8.2056 9.4704 2.3530 20 14 6.3444 8.2840 0.6784 21 1 4.9953 8.7108 1.1289 22 1 6.8134 9.1863 -0.4038 23 1 6.2782 6.8911 0.1677 24 1 -0.5401 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3588 2.1316 0.0895 28 1 2.6213 1.4024 -0.9315 29 1 3.7399 0.5063 1.0920 30 1 2.4773 1.2355 2.1130 31 1 4.7848 1.9794 2.8842 32 1 5.9545 2.0189 4.2985 33 1 7.5671 2.2519 6.1366 34 1 8.9201 4.2953 6.3483 35 1 8.6696 6.1236 4.7271 36 1 8.0816 10.2447 1.7822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454238541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = -5.980832 kcal Electronic energy + Delta-G solvation = -20610.166489 eV Core-core repulsion = 17256.455705 eV Total energy + Delta-G solvation = -3353.710785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75877 -38.43514 -37.17960 -36.55488 -35.18862 -32.48840 -32.30776 -30.36482 -29.26665 -28.80640 -25.33437 -23.50614 -23.25942 -21.43407 -20.47799 -19.99064 -18.36938 -17.93488 -17.26868 -16.43820 -16.18158 -15.17306 -15.02911 -14.58731 -14.37105 -14.22398 -14.06797 -13.76935 -13.63830 -13.22098 -13.02520 -12.39882 -12.30365 -12.18388 -11.91266 -11.47189 -11.43969 -11.30797 -10.89471 -10.80084 -10.71466 -10.04145 -9.76496 -9.64073 -9.14149 -8.90490 -8.61540 -8.43459 -7.53672 -6.49275 -4.14656 1.50596 1.79966 2.12932 2.22760 3.33083 3.40220 3.54040 3.69251 4.36388 4.38309 4.46416 4.62965 4.66953 4.83898 4.90115 4.99250 5.06880 5.13252 5.20903 5.30768 5.48499 5.58265 5.61497 5.75634 5.84353 5.97228 6.25542 6.29976 6.38475 6.47772 6.74543 6.93029 7.08133 7.10232 7.42171 7.61257 7.77478 7.91773 8.84121 8.87841 9.47532 10.55342 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.004799 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.868988 B = 5832.995604 C = 7517.077100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C -0.089 4.089 4 C 0.037 3.963 5 O -0.147 6.147 6 N -0.607 5.607 7 C 0.572 3.428 8 O -0.499 6.499 9 C -0.218 4.218 10 C -0.042 4.042 11 C -0.220 4.220 12 C -0.049 4.049 13 C -0.224 4.224 14 C 0.203 3.797 15 O -0.163 6.163 16 C -0.397 4.397 17 H 0.110 0.890 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.237 1.237 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 -18.309 1.526 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.171 4.171 3 C -0.127 4.127 4 C -0.041 4.041 5 O -0.151 6.151 6 N -0.313 5.313 7 C 0.363 3.637 8 O -0.371 6.371 9 C -0.223 4.223 10 C -0.060 4.060 11 C -0.239 4.239 12 C -0.067 4.067 13 C -0.243 4.243 14 C 0.145 3.855 15 O -0.063 6.063 16 C -0.472 4.472 17 H 0.127 0.873 18 C -0.133 4.133 19 N -0.502 5.502 20 Si 0.723 3.277 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.160 1.160 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.240 0.760 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.952 -17.162 0.460 19.362 hybrid contribution -0.444 -0.566 -0.080 0.724 sum -9.396 -17.728 0.380 20.067 Atomic orbital electron populations 1.23929 0.95862 1.02170 1.00312 1.22757 0.95982 0.97757 1.00584 1.20589 0.97721 0.96368 0.98044 1.22859 0.94421 0.87350 0.99429 1.90567 1.50473 1.36523 1.37505 1.47598 1.37909 1.21054 1.24747 1.18230 0.79637 0.80349 0.85512 1.90882 1.65889 1.38396 1.41968 1.18500 1.05187 0.97503 1.01097 1.20753 0.96483 0.95601 0.93211 1.20532 1.02321 0.99543 1.01474 1.20986 0.96457 0.92528 0.96750 1.21285 1.03478 1.01810 0.97682 1.18930 0.91221 0.87566 0.87789 1.83784 1.60272 1.20988 1.41249 1.20940 1.22530 0.87060 1.16630 0.87285 1.24500 0.96982 0.93314 0.98479 1.69635 1.39549 1.02307 1.38737 0.86217 0.80177 0.80688 0.80610 1.19811 1.21131 1.16011 0.88198 0.88296 0.87033 0.90160 0.89603 0.92234 0.92235 0.75970 0.86940 0.86823 0.86644 0.84191 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 14.32 29.02 0.42 -0.90 16 2 C -0.15 -1.17 9.52 -36.03 -0.34 -1.51 16 3 C -0.09 -0.85 6.03 -27.89 -0.17 -1.02 16 4 C 0.04 0.40 6.21 37.15 0.23 0.63 16 5 O -0.15 -2.43 11.11 -29.61 -0.33 -2.75 16 6 N -0.61 -9.99 6.34 30.46 0.19 -9.79 16 7 C 0.57 12.26 7.91 -12.47 -0.10 12.17 16 8 O -0.50 -13.33 15.57 -24.39 -0.38 -13.71 16 9 C -0.22 -4.41 5.89 -104.81 -0.62 -5.03 16 10 C -0.04 -0.64 9.54 -39.20 -0.37 -1.02 16 11 C -0.22 -3.25 10.02 -39.61 -0.40 -3.65 16 12 C -0.05 -0.80 10.03 -39.54 -0.40 -1.20 16 13 C -0.22 -4.60 9.16 -39.44 -0.36 -4.96 16 14 C 0.20 4.77 6.66 -38.60 -0.26 4.51 16 15 O -0.16 -4.51 6.67 -21.03 -0.14 -4.65 16 16 C -0.40 -11.32 9.95 30.90 0.31 -11.02 16 17 H 0.11 3.07 5.44 -52.48 -0.29 2.78 16 18 C 0.07 2.11 5.49 -17.51 -0.10 2.02 16 19 N -0.87 -25.17 13.96 55.48 0.77 -24.40 16 20 Si 0.90 23.52 28.62 -169.99 -4.86 18.66 16 21 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.24 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 25 H 0.10 0.69 7.84 -52.48 -0.41 0.28 16 26 H 0.11 0.71 8.06 -52.48 -0.42 0.29 16 27 H 0.08 0.81 7.79 -51.93 -0.40 0.40 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.40 4.79 6.57 -40.82 -0.27 4.52 16 32 H 0.11 1.26 6.40 -52.49 -0.34 0.92 16 33 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.14 2.98 5.64 -52.48 -0.30 2.69 16 36 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -34.26 318.96 -6.19 -40.45 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.10 Total: 2.37 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.15 Total: -10.98 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.97 Total: -34.19 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.85 Total: -21.11 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.86 Total: 18.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.26 -6.19 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454238541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.471 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds