Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00667 * 2 1 4 4 C 1.52992 * 109.47248 * 124.99974 * 3 2 1 5 5 O 1.42900 * 109.47231 * 179.97438 * 4 3 2 6 6 N 1.41598 * 114.00290 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00012 * 179.97438 * 6 5 4 8 8 O 1.21595 * 120.00050 * 0.02562 * 7 6 5 9 9 C 1.47539 * 119.99983 * 179.97438 * 7 6 5 10 10 C 1.39668 * 120.19435 * 0.02562 * 9 7 6 11 11 C 1.37826 * 119.91423 * 179.97438 * 10 9 7 12 12 C 1.38570 * 120.32914 * 0.02562 * 11 10 9 13 13 C 1.38027 * 120.39755 * 359.97438 * 12 11 10 14 14 C 1.38833 * 120.07578 * 359.97438 * 13 12 11 15 15 O 1.35513 * 120.16290 * 180.02562 * 14 13 12 16 16 C 1.34812 * 117.00369 * 354.38915 * 15 14 13 17 17 H 1.08009 * 119.99781 * 5.05977 * 16 15 14 18 18 C 1.38695 * 120.00269 * 185.05464 * 16 15 14 19 19 N 1.31525 * 120.00025 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00118 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47257 * 89.99919 * 20 18 16 22 22 H 1.48503 * 109.47018 * 209.99791 * 20 18 16 23 23 H 1.48502 * 109.46881 * 329.99507 * 20 18 16 24 24 H 1.07997 * 120.00640 * 180.02562 * 1 2 3 25 25 H 1.08009 * 119.99359 * 0.02562 * 1 2 3 26 26 H 1.08009 * 119.99359 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47077 * 4.99826 * 3 2 1 28 28 H 1.09003 * 109.46802 * 245.00349 * 3 2 1 29 29 H 1.09000 * 109.47202 * 59.99928 * 4 3 2 30 30 H 1.09003 * 109.47525 * 299.99932 * 4 3 2 31 31 H 0.97003 * 119.99996 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.04235 * 0.24935 * 10 9 7 33 33 H 1.08005 * 119.83468 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.80371 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.96271 * 180.02562 * 13 12 11 36 36 H 0.96994 * 120.00214 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7502 2.5701 1.1812 6 7 4.6803 2.6981 2.2411 7 6 5.4213 3.8181 2.3559 8 8 5.2907 4.7188 1.5495 9 6 6.3901 3.9516 3.4606 10 6 6.5430 2.9198 4.3894 11 6 7.4501 3.0505 5.4188 12 6 8.2121 4.2017 5.5381 13 6 8.0718 5.2296 4.6276 14 6 7.1638 5.1152 3.5836 15 8 7.0249 6.1230 2.6885 16 6 7.7119 7.2571 2.9322 17 1 8.4000 7.3036 3.7633 18 6 7.5350 8.3641 2.1156 19 7 8.2056 9.4704 2.3530 20 14 6.3444 8.2840 0.6784 21 1 4.9953 8.7108 1.1289 22 1 6.8134 9.1863 -0.4038 23 1 6.2782 6.8911 0.1677 24 1 -0.5401 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3588 2.1316 0.0895 28 1 2.6213 1.4024 -0.9315 29 1 3.7399 0.5063 1.0920 30 1 2.4773 1.2355 2.1130 31 1 4.7848 1.9794 2.8842 32 1 5.9545 2.0189 4.2985 33 1 7.5671 2.2519 6.1366 34 1 8.9201 4.2953 6.3483 35 1 8.6696 6.1236 4.7271 36 1 8.0816 10.2447 1.7822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454238541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = -28.687033 kcal Electronic energy + Delta-G solvation = -20611.151104 eV Core-core repulsion = 17256.455705 eV Total energy + Delta-G solvation = -3354.695399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38628 -39.97024 -38.51594 -38.14068 -36.04286 -34.53367 -33.75564 -31.65193 -30.82209 -29.79298 -27.28942 -24.89949 -24.22637 -23.04131 -21.88212 -20.74045 -19.84627 -19.78853 -18.72282 -18.02866 -17.13434 -16.73838 -16.22034 -16.14829 -15.84549 -15.71956 -15.51749 -15.23436 -15.11922 -14.56087 -14.23774 -14.16208 -14.04788 -13.27519 -13.14379 -12.88003 -12.79097 -12.60592 -12.40645 -12.04395 -12.03906 -11.79875 -11.55368 -10.97836 -10.88630 -10.32146 -10.08564 -9.82173 -9.17016 -8.59138 -6.27509 0.00653 0.63614 0.78213 1.23546 1.29126 1.39157 1.58057 1.95729 2.29218 2.74347 2.98570 3.13836 3.43665 3.73898 3.88726 3.98907 4.06416 4.17137 4.24825 4.34238 4.37769 4.46334 4.56572 4.76182 4.77959 4.94640 5.03113 5.05882 5.26646 5.45609 5.58816 5.67862 5.68766 5.76404 5.82595 5.83582 6.13700 6.41328 6.78140 7.35957 7.57472 8.51228 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.004799 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.868988 B = 5832.995604 C = 7517.077100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 C -0.088 4.088 4 C 0.031 3.969 5 O -0.179 6.179 6 N -0.582 5.582 7 C 0.566 3.434 8 O -0.564 6.564 9 C -0.224 4.224 10 C -0.029 4.029 11 C -0.185 4.185 12 C -0.037 4.037 13 C -0.247 4.247 14 C 0.165 3.835 15 O -0.212 6.212 16 C -0.402 4.402 17 H 0.097 0.903 18 C 0.030 3.970 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.263 1.263 23 H -0.271 1.271 24 H 0.118 0.882 25 H 0.094 0.906 26 H 0.129 0.871 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.424 0.576 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.155 0.845 35 H 0.119 0.881 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 -23.155 3.702 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C -0.127 4.127 4 C -0.045 4.045 5 O -0.185 6.185 6 N -0.288 5.288 7 C 0.357 3.643 8 O -0.442 6.442 9 C -0.229 4.229 10 C -0.047 4.047 11 C -0.203 4.203 12 C -0.055 4.055 13 C -0.266 4.266 14 C 0.111 3.889 15 O -0.116 6.116 16 C -0.478 4.478 17 H 0.115 0.885 18 C -0.171 4.171 19 N -0.548 5.548 20 Si 0.774 3.226 21 H -0.203 1.203 22 H -0.187 1.187 23 H -0.195 1.195 24 H 0.136 0.864 25 H 0.113 0.887 26 H 0.147 0.853 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.269 0.731 32 H 0.186 0.814 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.136 0.864 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.895 -22.116 2.689 24.378 hybrid contribution -0.263 0.371 -0.480 0.662 sum -10.159 -21.745 2.209 24.102 Atomic orbital electron populations 1.24118 0.95837 1.02909 0.99107 1.22740 0.96097 0.97184 1.01590 1.20599 0.97370 0.97381 0.97332 1.23215 0.94807 0.85792 1.00726 1.90588 1.50654 1.39839 1.37374 1.47103 1.36638 1.20171 1.24869 1.18517 0.80006 0.80671 0.85142 1.90862 1.67986 1.41031 1.44328 1.18878 1.04414 0.97713 1.01872 1.21374 0.96463 0.95619 0.91293 1.21264 0.98890 0.99410 1.00733 1.21504 0.96574 0.91481 0.95951 1.21338 1.03578 1.02997 0.98713 1.19709 0.92751 0.87870 0.88557 1.83781 1.62385 1.21619 1.43778 1.20925 1.22471 0.88149 1.16249 0.88535 1.24976 0.98405 0.93514 1.00209 1.69669 1.41818 1.02933 1.40410 0.85498 0.78834 0.78730 0.79493 1.20277 1.18741 1.19539 0.86387 0.88722 0.85271 0.91322 0.90451 0.89846 0.90387 0.73123 0.81448 0.81086 0.82747 0.86354 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 67.79 0.97 -1.18 16 2 C -0.16 -2.02 9.52 25.65 0.24 -1.78 16 3 C -0.09 -1.57 6.03 29.84 0.18 -1.39 16 4 C 0.03 0.59 6.21 71.98 0.45 1.04 16 5 O -0.18 -5.72 11.11 -21.43 -0.24 -5.96 16 6 N -0.58 -17.83 6.34 -175.80 -1.11 -18.95 16 7 C 0.57 24.16 7.91 86.70 0.69 24.85 16 8 O -0.56 -31.58 15.57 24.36 0.38 -31.20 16 9 C -0.22 -8.75 5.89 -19.99 -0.12 -8.87 16 10 C -0.03 -0.74 9.54 22.52 0.21 -0.52 16 11 C -0.18 -4.16 10.02 22.25 0.22 -3.94 16 12 C -0.04 -1.06 10.03 22.30 0.22 -0.83 16 13 C -0.25 -10.19 9.16 22.36 0.20 -9.98 16 14 C 0.16 7.92 6.66 22.91 0.15 8.07 16 15 O -0.21 -12.48 6.67 0.94 0.01 -12.47 16 16 C -0.40 -24.64 9.95 67.93 0.68 -23.96 16 17 H 0.10 5.90 5.44 -2.91 -0.02 5.88 16 18 C 0.03 1.82 5.49 84.85 0.47 2.28 16 19 N -0.91 -55.82 13.96 21.62 0.30 -55.52 16 20 Si 0.95 52.04 28.62 68.60 1.96 54.01 16 21 H -0.28 -15.04 7.11 99.48 0.71 -14.33 16 22 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -16.18 7.11 99.48 0.71 -15.47 16 24 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 25 H 0.09 1.18 7.84 -2.91 -0.02 1.16 16 26 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 27 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.42 8.18 6.57 -92.71 -0.61 7.57 16 32 H 0.17 2.39 6.40 -2.91 -0.02 2.37 16 33 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 36 H 0.29 16.22 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -84.43 318.96 6.36 -78.07 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.50 Total: 8.25 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.57 Total: -16.22 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -0.81 Total: -74.47 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: 0.15 Total: -49.63 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.96 Total: 54.01 kcal Total: -84.43 6.36 -78.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454238541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.381 kcal (2) G-P(sol) polarization free energy of solvation -84.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds