Wall clock time and date at job start Mon Mar 30 2020 01:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30999 * 120.00328 * 2 1 4 4 C 1.50700 * 120.00328 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46986 * 359.97438 * 4 3 2 6 6 O 1.42898 * 109.46502 * 239.99413 * 4 3 2 7 7 C 1.50696 * 109.47403 * 119.99574 * 4 3 2 8 8 O 1.21288 * 120.00216 * 114.99966 * 7 4 3 9 9 N 1.34784 * 119.99564 * 294.99445 * 7 4 3 10 10 C 1.39997 * 119.99638 * 175.48951 * 9 7 4 11 11 C 1.38915 * 119.99867 * 215.12923 * 10 9 7 12 12 C 1.38007 * 119.99853 * 180.02562 * 11 10 9 13 13 C 1.38913 * 119.99802 * 359.97438 * 12 11 10 14 14 O 1.35777 * 119.99308 * 180.02562 * 13 12 11 15 15 C 1.34813 * 117.00497 * 354.65472 * 14 13 12 16 16 H 1.07995 * 119.99682 * 5.03918 * 15 14 13 17 17 C 1.38626 * 119.99845 * 185.03799 * 15 14 13 18 18 N 1.31583 * 119.99809 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00296 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46945 * 90.00539 * 19 17 15 21 21 H 1.48503 * 109.47334 * 209.99826 * 19 17 15 22 22 H 1.48488 * 109.47389 * 330.00298 * 19 17 15 23 23 C 1.38904 * 120.00480 * 0.27677 * 13 12 11 24 24 C 1.38008 * 119.99891 * 359.45270 * 23 13 12 25 25 H 1.08996 * 109.47506 * 300.01130 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00608 * 1 2 3 27 27 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99793 * 179.97438 * 2 1 3 29 29 H 1.08007 * 119.99803 * 359.97438 * 3 2 1 30 30 H 0.96695 * 114.00028 * 299.99116 * 6 4 3 31 31 H 0.96994 * 120.00365 * 355.49590 * 9 7 4 32 32 H 1.08001 * 120.00397 * 359.97438 * 11 10 9 33 33 H 1.08000 * 120.00160 * 179.97438 * 12 11 10 34 34 H 0.96994 * 120.00067 * 180.02562 * 18 17 15 35 35 H 1.08000 * 119.99978 * 179.72591 * 23 13 12 36 36 H 1.07999 * 119.99927 * 180.27031 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1344 0.0000 4 6 3.6691 1.1344 0.0006 5 1 4.0324 0.1068 0.0014 6 8 4.1448 1.8085 1.1674 7 6 4.1719 1.8445 -1.2298 8 8 4.7926 2.8808 -1.1209 9 7 3.9320 1.3277 -2.4513 10 6 4.3159 2.0337 -3.5977 11 6 3.5321 1.9771 -4.7432 12 6 3.9108 2.6726 -5.8735 13 6 5.0754 3.4298 -5.8654 14 8 5.4476 4.1145 -6.9772 15 6 4.7050 3.9297 -8.0871 16 1 3.8107 3.3257 -8.0441 17 6 5.0893 4.5150 -9.2835 18 7 4.3642 4.3351 -10.3667 19 14 6.6356 5.5603 -9.3577 20 1 7.7991 4.7000 -9.6919 21 1 6.4772 6.6054 -10.4008 22 1 6.8601 6.2065 -8.0398 23 6 5.8619 3.4822 -4.7216 24 6 5.4803 2.7912 -3.5896 25 1 -0.3634 0.5140 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 2.0469 -0.9353 0.0004 29 1 1.6220 2.0698 -0.0004 30 1 3.8595 2.7301 1.2330 31 1 3.4934 0.4668 -2.5362 32 1 2.6269 1.3881 -4.7497 33 1 3.3017 2.6283 -6.7642 34 1 4.6332 4.7443 -11.2039 35 1 6.7696 4.0673 -4.7168 36 1 6.0895 2.8355 -2.6989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463544427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:51 Heat of formation + Delta-G solvation = -66.380450 kcal Electronic energy + Delta-G solvation = -20401.607600 eV Core-core repulsion = 17045.277691 eV Total energy + Delta-G solvation = -3356.329908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49356 -39.02484 -37.44000 -36.35979 -35.00739 -33.98191 -32.35478 -30.34131 -29.92100 -27.98297 -25.62519 -24.85693 -22.40643 -21.66626 -20.37817 -20.30106 -18.31355 -17.85000 -17.39442 -16.92438 -16.55323 -15.54546 -14.86197 -14.69680 -14.47681 -13.92610 -13.79671 -13.72069 -13.64468 -13.42311 -13.01548 -12.83991 -12.39576 -12.30953 -12.14661 -11.88895 -11.81808 -11.66192 -11.07896 -10.96914 -10.72888 -10.21664 -9.90816 -9.70202 -9.45011 -9.22458 -8.80350 -8.32938 -7.10568 -6.44113 -4.10085 1.61258 1.93528 2.07894 2.66470 3.12086 3.22123 3.25455 3.40753 4.16085 4.22641 4.30466 4.44969 4.54977 4.64976 4.85751 4.86988 5.07888 5.16034 5.26316 5.30510 5.45318 5.60113 5.68228 6.00968 6.06972 6.13254 6.16753 6.26767 6.63829 6.71345 6.86338 7.02861 7.19015 7.21650 7.54622 7.57056 7.75456 7.99378 8.19172 8.91195 9.53424 10.63386 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.003437 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.129454 B = 8144.896176 C = 8848.125670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.129 3.871 5 H 0.124 0.876 6 O -0.534 6.534 7 C 0.481 3.519 8 O -0.520 6.520 9 N -0.654 5.654 10 C 0.040 3.960 11 C -0.090 4.090 12 C -0.207 4.207 13 C 0.153 3.847 14 O -0.215 6.215 15 C -0.390 4.390 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.879 5.879 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.179 4.179 24 C -0.070 4.070 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.386 0.614 31 H 0.403 0.597 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.280 0.720 35 H 0.121 0.879 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 -9.165 18.381 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C -0.220 4.220 4 C 0.066 3.934 5 H 0.142 0.858 6 O -0.339 6.339 7 C 0.267 3.733 8 O -0.395 6.395 9 N -0.299 5.299 10 C -0.053 4.053 11 C -0.110 4.110 12 C -0.227 4.227 13 C 0.101 3.899 14 O -0.120 6.120 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.198 4.198 24 C -0.090 4.090 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.235 0.765 31 H 0.238 0.762 32 H 0.131 0.869 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.723 -8.768 18.335 20.866 hybrid contribution -0.105 0.451 -0.532 0.706 sum -4.828 -8.317 17.803 20.235 Atomic orbital electron populations 1.20917 0.92514 1.02796 1.02519 1.22973 0.96716 0.97702 0.97090 1.23209 0.94730 0.99645 1.04396 1.20786 0.91063 0.97402 0.84117 0.85825 1.86602 1.77046 1.30085 1.40160 1.21518 0.80469 0.86062 0.85264 1.90723 1.39167 1.23598 1.86047 1.43214 1.59832 1.22427 1.04455 1.17335 0.97203 1.03794 0.86932 1.20537 0.97903 1.00187 0.92378 1.21100 0.99397 1.02692 0.99475 1.19161 0.92607 0.90578 0.87558 1.83585 1.52695 1.58522 1.17230 1.20759 1.07782 1.33650 0.84353 0.87618 1.24466 0.98773 0.97179 0.93557 1.69653 1.38620 1.43395 1.00047 0.86178 0.82020 0.79971 0.78749 1.19844 1.20775 1.18287 1.20159 1.01653 1.06224 0.91805 1.20753 0.94474 0.96366 0.97392 0.91307 0.91104 0.91669 0.86806 0.86347 0.76520 0.76221 0.86868 0.84451 0.91024 0.86083 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 10.17 36.01 0.37 -0.36 16 2 C -0.13 -0.81 9.87 -36.03 -0.36 -1.16 16 3 C -0.20 -1.59 8.69 -36.03 -0.31 -1.90 16 4 C 0.13 1.23 3.75 -29.04 -0.11 1.12 16 5 H 0.12 0.94 7.78 -51.93 -0.40 0.53 16 6 O -0.53 -5.80 12.98 -55.09 -0.72 -6.52 16 7 C 0.48 6.37 7.00 -10.98 -0.08 6.29 16 8 O -0.52 -8.97 13.76 -14.31 -0.20 -9.17 16 9 N -0.65 -8.37 5.29 -9.82 -0.05 -8.42 16 10 C 0.04 0.67 6.30 -83.62 -0.53 0.15 16 11 C -0.09 -1.56 9.96 -39.42 -0.39 -1.95 16 12 C -0.21 -4.35 9.16 -39.42 -0.36 -4.71 16 13 C 0.15 3.54 6.65 -39.08 -0.26 3.29 16 14 O -0.22 -5.68 8.58 0.02 0.00 -5.68 16 15 C -0.39 -10.89 9.94 30.88 0.31 -10.58 16 16 H 0.11 2.98 5.43 -52.49 -0.28 2.70 16 17 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 18 N -0.88 -25.19 13.96 55.48 0.77 -24.42 16 19 Si 0.91 21.65 28.62 -169.99 -4.86 16.79 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.26 -6.25 7.11 56.52 0.40 -5.84 16 23 C -0.18 -3.69 9.99 -39.42 -0.39 -4.09 16 24 C -0.07 -1.32 8.69 -39.41 -0.34 -1.66 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.11 0.57 7.83 -52.49 -0.41 0.16 16 29 H 0.12 0.96 8.05 -52.48 -0.42 0.54 16 30 H 0.39 3.40 8.78 45.56 0.40 3.80 16 31 H 0.40 3.74 8.82 -40.82 -0.36 3.38 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 2.99 5.63 -52.49 -0.30 2.70 16 34 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.13 2.42 6.22 -52.49 -0.33 2.10 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -32.41 317.58 -6.18 -38.58 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.35 Total: 7.93 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.55 Total: -13.89 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.72 Total: -32.84 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.91 Total: -21.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.41 -6.18 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463544427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.797 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds