Wall clock time and date at job start Mon Mar 30 2020 01:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30999 * 120.00328 * 2 1 4 4 C 1.50700 * 120.00328 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46986 * 359.97438 * 4 3 2 6 6 O 1.42898 * 109.46502 * 239.99413 * 4 3 2 7 7 C 1.50696 * 109.47403 * 119.99574 * 4 3 2 8 8 O 1.21288 * 120.00216 * 114.99966 * 7 4 3 9 9 N 1.34784 * 119.99564 * 294.99445 * 7 4 3 10 10 C 1.39997 * 119.99638 * 175.48951 * 9 7 4 11 11 C 1.38915 * 119.99867 * 215.12923 * 10 9 7 12 12 C 1.38007 * 119.99853 * 180.02562 * 11 10 9 13 13 C 1.38913 * 119.99802 * 359.97438 * 12 11 10 14 14 O 1.35777 * 119.99308 * 180.02562 * 13 12 11 15 15 C 1.34813 * 117.00497 * 354.65472 * 14 13 12 16 16 H 1.07995 * 119.99682 * 5.03918 * 15 14 13 17 17 C 1.38626 * 119.99845 * 185.03799 * 15 14 13 18 18 N 1.31583 * 119.99809 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00296 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46945 * 90.00539 * 19 17 15 21 21 H 1.48503 * 109.47334 * 209.99826 * 19 17 15 22 22 H 1.48488 * 109.47389 * 330.00298 * 19 17 15 23 23 C 1.38904 * 120.00480 * 0.27677 * 13 12 11 24 24 C 1.38008 * 119.99891 * 359.45270 * 23 13 12 25 25 H 1.08996 * 109.47506 * 300.01130 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00608 * 1 2 3 27 27 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99793 * 179.97438 * 2 1 3 29 29 H 1.08007 * 119.99803 * 359.97438 * 3 2 1 30 30 H 0.96695 * 114.00028 * 299.99116 * 6 4 3 31 31 H 0.96994 * 120.00365 * 355.49590 * 9 7 4 32 32 H 1.08001 * 120.00397 * 359.97438 * 11 10 9 33 33 H 1.08000 * 120.00160 * 179.97438 * 12 11 10 34 34 H 0.96994 * 120.00067 * 180.02562 * 18 17 15 35 35 H 1.08000 * 119.99978 * 179.72591 * 23 13 12 36 36 H 1.07999 * 119.99927 * 180.27031 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1344 0.0000 4 6 3.6691 1.1344 0.0006 5 1 4.0324 0.1068 0.0014 6 8 4.1448 1.8085 1.1674 7 6 4.1719 1.8445 -1.2298 8 8 4.7926 2.8808 -1.1209 9 7 3.9320 1.3277 -2.4513 10 6 4.3159 2.0337 -3.5977 11 6 3.5321 1.9771 -4.7432 12 6 3.9108 2.6726 -5.8735 13 6 5.0754 3.4298 -5.8654 14 8 5.4476 4.1145 -6.9772 15 6 4.7050 3.9297 -8.0871 16 1 3.8107 3.3257 -8.0441 17 6 5.0893 4.5150 -9.2835 18 7 4.3642 4.3351 -10.3667 19 14 6.6356 5.5603 -9.3577 20 1 7.7991 4.7000 -9.6919 21 1 6.4772 6.6054 -10.4008 22 1 6.8601 6.2065 -8.0398 23 6 5.8619 3.4822 -4.7216 24 6 5.4803 2.7912 -3.5896 25 1 -0.3634 0.5140 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 2.0469 -0.9353 0.0004 29 1 1.6220 2.0698 -0.0004 30 1 3.8595 2.7301 1.2330 31 1 3.4934 0.4668 -2.5362 32 1 2.6269 1.3881 -4.7497 33 1 3.3017 2.6283 -6.7642 34 1 4.6332 4.7443 -11.2039 35 1 6.7696 4.0673 -4.7168 36 1 6.0895 2.8355 -2.6989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463544427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:50 Heat of formation + Delta-G solvation = -89.230667 kcal Electronic energy + Delta-G solvation = -20402.598459 eV Core-core repulsion = 17045.277691 eV Total energy + Delta-G solvation = -3357.320768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70848 -40.62314 -38.69466 -37.57263 -35.83620 -35.13168 -34.35974 -31.93370 -30.86711 -29.25377 -27.26095 -25.91904 -23.99957 -23.05128 -21.63045 -20.89840 -19.90734 -19.26902 -19.04608 -18.05519 -17.61682 -16.63262 -16.50125 -15.83626 -15.82143 -15.58182 -15.51205 -15.01983 -14.50454 -14.24086 -14.17716 -14.07391 -13.96604 -13.63789 -13.46447 -13.34297 -12.92370 -12.73657 -12.57206 -12.31851 -12.01589 -11.79454 -11.42620 -11.14493 -10.77481 -10.67831 -10.04819 -9.88766 -8.71698 -8.50009 -6.21286 0.42432 0.47630 1.05221 1.31999 1.34551 1.51831 1.55217 2.03250 2.28307 2.74460 3.02480 3.13323 3.44157 3.60774 3.78287 3.96814 4.01867 4.09019 4.39564 4.44103 4.55171 4.63758 4.70017 4.84156 4.85740 5.04372 5.13028 5.17604 5.35022 5.47160 5.51184 5.66090 5.74364 5.75097 5.88146 6.16339 6.36043 6.58732 6.84615 7.10954 7.58521 8.61193 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.003437 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.129454 B = 8144.896176 C = 8848.125670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C -0.220 4.220 4 C 0.142 3.858 5 H 0.151 0.849 6 O -0.548 6.548 7 C 0.481 3.519 8 O -0.561 6.561 9 N -0.642 5.642 10 C 0.068 3.932 11 C -0.081 4.081 12 C -0.214 4.214 13 C 0.115 3.885 14 O -0.244 6.244 15 C -0.399 4.399 16 H 0.087 0.913 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.266 1.266 23 C -0.178 4.178 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.392 0.608 31 H 0.425 0.575 32 H 0.155 0.845 33 H 0.123 0.877 34 H 0.285 0.715 35 H 0.127 0.873 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -10.950 20.824 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.239 4.239 4 C 0.080 3.920 5 H 0.168 0.832 6 O -0.354 6.354 7 C 0.269 3.731 8 O -0.439 6.439 9 N -0.290 5.290 10 C -0.026 4.026 11 C -0.101 4.101 12 C -0.234 4.234 13 C 0.066 3.934 14 O -0.152 6.152 15 C -0.475 4.475 16 H 0.105 0.895 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.191 1.191 23 C -0.198 4.198 24 C -0.097 4.097 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.242 0.758 31 H 0.264 0.736 32 H 0.172 0.828 33 H 0.140 0.860 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.233 -10.605 20.833 23.955 hybrid contribution -0.087 0.807 -0.921 1.228 sum -5.320 -9.798 19.911 22.820 Atomic orbital electron populations 1.20986 0.92001 1.03685 1.02513 1.23238 0.97184 0.97930 0.94074 1.23014 0.93508 1.00107 1.07275 1.20857 0.92037 0.97637 0.81474 0.83189 1.86579 1.77532 1.30786 1.40531 1.22375 0.79092 0.85496 0.86096 1.90713 1.40951 1.25617 1.86667 1.43167 1.59632 1.23066 1.03131 1.17459 0.95551 1.01600 0.87971 1.20819 0.99007 0.99372 0.90935 1.21165 0.98737 1.03095 1.00387 1.19599 0.94225 0.92143 0.87477 1.83532 1.53318 1.60745 1.17586 1.20743 1.07617 1.33638 0.85500 0.89521 1.25213 1.01695 0.98497 0.93195 1.69725 1.40452 1.45293 1.00687 0.85277 0.78637 0.78706 0.78494 1.19045 1.19206 1.19056 1.20332 1.01641 1.06246 0.91564 1.20913 0.95423 0.96590 0.96821 0.91136 0.91297 0.90377 0.84759 0.87062 0.75794 0.73593 0.82753 0.85961 0.90568 0.85537 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 10.17 71.24 0.72 -0.30 16 2 C -0.11 -0.91 9.87 25.65 0.25 -0.66 16 3 C -0.22 -2.74 8.69 25.65 0.22 -2.52 16 4 C 0.14 2.23 3.75 29.10 0.11 2.34 16 5 H 0.15 1.57 7.78 -2.39 -0.02 1.55 16 6 O -0.55 -10.62 12.98 -129.99 -1.69 -12.31 16 7 C 0.48 11.36 7.00 87.65 0.61 11.97 16 8 O -0.56 -18.39 13.76 15.94 0.22 -18.17 16 9 N -0.64 -14.12 5.29 -303.37 -1.61 -15.72 16 10 C 0.07 2.13 6.30 38.16 0.24 2.37 16 11 C -0.08 -2.64 9.96 22.38 0.22 -2.42 16 12 C -0.21 -9.06 9.16 22.38 0.20 -8.85 16 13 C 0.12 5.43 6.65 22.59 0.15 5.58 16 14 O -0.24 -13.35 8.58 -22.86 -0.20 -13.54 16 15 C -0.40 -23.25 9.94 67.91 0.68 -22.58 16 16 H 0.09 5.19 5.43 -2.91 -0.02 5.18 16 17 C 0.01 0.73 5.49 84.82 0.47 1.19 16 18 N -0.92 -54.47 13.96 21.61 0.30 -54.16 16 19 Si 0.97 45.64 28.62 68.60 1.96 47.61 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 C -0.18 -7.37 9.99 22.37 0.22 -7.15 16 24 C -0.08 -2.81 8.69 22.38 0.19 -2.62 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.13 0.63 7.83 -2.91 -0.02 0.61 16 29 H 0.11 1.55 8.05 -2.91 -0.02 1.53 16 30 H 0.39 6.33 8.78 -74.06 -0.65 5.68 16 31 H 0.43 5.85 8.82 -92.71 -0.82 5.03 16 32 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.12 5.54 5.63 -2.91 -0.02 5.53 16 34 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 36 H 0.14 4.86 6.22 -2.91 -0.02 4.84 16 Total: -1.00 -72.58 317.58 2.96 -69.62 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.34 Total: 20.31 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 4.30 Total: -23.64 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.30 Total: -69.88 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.66 Total: -44.02 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.96 Total: 47.61 kcal Total: -72.58 2.96 -69.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463544427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.608 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds