Wall clock time and date at job start Mon Mar 30 2020 01:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.30993 * 120.00022 * 2 1 4 4 C 1.50704 * 119.99726 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47187 * 244.99746 * 4 3 2 6 6 O 1.42894 * 109.47178 * 5.00170 * 4 3 2 7 7 C 1.50700 * 109.46775 * 125.00380 * 4 3 2 8 8 O 1.21293 * 119.99629 * 244.99524 * 7 4 3 9 9 N 1.34775 * 119.99947 * 65.00083 * 7 4 3 10 10 C 1.39995 * 119.99915 * 175.49215 * 9 7 4 11 11 C 1.38918 * 120.00409 * 214.84669 * 10 9 7 12 12 C 1.38002 * 119.99492 * 179.79298 * 11 10 9 13 13 C 1.38907 * 120.00512 * 0.46131 * 12 11 10 14 14 O 1.35779 * 119.99756 * 179.76724 * 13 12 11 15 15 C 1.34821 * 116.99793 * 185.36290 * 14 13 12 16 16 H 1.07998 * 119.99840 * 354.96343 * 15 14 13 17 17 C 1.38629 * 119.99728 * 174.96746 * 15 14 13 18 18 N 1.31574 * 120.00214 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99733 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47192 * 89.99697 * 19 17 15 21 21 H 1.48494 * 109.47011 * 209.99717 * 19 17 15 22 22 H 1.48495 * 109.46843 * 329.99623 * 19 17 15 23 23 C 1.38906 * 120.00360 * 359.79364 * 13 12 11 24 24 C 1.38001 * 119.99999 * 359.97422 * 23 13 12 25 25 H 1.09005 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47398 * 300.00122 * 1 2 3 27 27 H 1.09006 * 109.46737 * 59.99990 * 1 2 3 28 28 H 1.08005 * 119.99366 * 179.97438 * 2 1 3 29 29 H 1.07997 * 120.00504 * 0.02562 * 3 2 1 30 30 H 0.96703 * 114.00221 * 60.00220 * 6 4 3 31 31 H 0.97000 * 120.00243 * 355.49537 * 9 7 4 32 32 H 1.08001 * 119.99929 * 0.02562 * 11 10 9 33 33 H 1.08010 * 119.99625 * 180.22968 * 12 11 10 34 34 H 0.97000 * 120.00074 * 180.02562 * 18 17 15 35 35 H 1.07997 * 119.99895 * 179.97438 * 23 13 12 36 36 H 1.07998 * 120.00294 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6690 1.1343 0.0006 5 1 4.0320 1.5689 0.9320 6 8 4.1453 -0.2078 -0.1164 7 6 4.1718 1.9491 -1.1632 8 8 4.7928 1.4121 -2.0561 9 7 3.9314 3.2744 -1.2119 10 6 4.4780 4.0475 -2.2431 11 6 4.8824 5.3528 -1.9931 12 6 5.4251 6.1133 -3.0088 13 6 5.5582 5.5770 -4.2832 14 8 6.0879 6.3270 -5.2834 15 6 6.0871 5.7877 -6.5191 16 1 5.7524 4.7712 -6.6643 17 6 6.5160 6.5379 -7.6030 18 7 6.9233 7.7764 -7.4261 19 14 6.5141 5.7909 -9.3152 20 1 5.2063 6.0525 -9.9680 21 1 7.6011 6.4007 -10.1225 22 1 6.7336 4.3256 -9.2161 23 6 5.1490 4.2736 -4.5344 24 6 4.6107 3.5113 -3.5178 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.0469 -0.9354 0.0004 29 1 1.6221 2.0698 0.0004 30 1 3.8603 -0.6574 -0.9237 31 1 3.3797 3.6925 -0.5324 32 1 4.7755 5.7711 -1.0032 33 1 5.7430 7.1270 -2.8136 34 1 7.2231 8.3015 -8.1846 35 1 5.2522 3.8568 -5.5254 36 1 4.2921 2.4980 -3.7132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463544429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:53 Heat of formation + Delta-G solvation = -67.097859 kcal Electronic energy + Delta-G solvation = -20390.595057 eV Core-core repulsion = 17034.234039 eV Total energy + Delta-G solvation = -3356.361018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45591 -38.89627 -37.54218 -36.30699 -34.52950 -33.90126 -32.21040 -30.24775 -29.92150 -27.78831 -25.67096 -25.02341 -22.44295 -21.60813 -20.38701 -19.73344 -18.44099 -17.86478 -17.25740 -16.94315 -16.40133 -15.72221 -14.72653 -14.53273 -14.49020 -14.02363 -13.66481 -13.65188 -13.58447 -13.37884 -12.96238 -12.89547 -12.60859 -12.09057 -11.76582 -11.64525 -11.56365 -11.54308 -11.09723 -11.01172 -10.76262 -10.43960 -9.96155 -9.71628 -9.32448 -9.08323 -8.71516 -8.23032 -6.97004 -6.45636 -4.03311 1.67832 2.05733 2.19111 2.74477 3.13664 3.14767 3.19534 3.22968 3.97187 3.99571 4.35870 4.51696 4.72561 4.73320 5.00203 5.08075 5.09419 5.24191 5.28251 5.36265 5.59512 5.64898 5.72098 6.10152 6.14793 6.21286 6.30404 6.33842 6.69763 6.81795 6.96927 7.06091 7.20892 7.28316 7.42013 7.63037 7.75131 7.99484 8.26376 9.00151 9.69042 10.72260 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.003342 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.960694 B = 8375.327348 C = 8748.114725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 C -0.208 4.208 4 C 0.128 3.872 5 H 0.133 0.867 6 O -0.536 6.536 7 C 0.482 3.518 8 O -0.519 6.519 9 N -0.654 5.654 10 C 0.029 3.971 11 C -0.091 4.091 12 C -0.178 4.178 13 C 0.147 3.853 14 O -0.176 6.176 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.221 4.221 24 C -0.063 4.063 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.384 0.616 31 H 0.402 0.598 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.270 0.730 35 H 0.131 0.869 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 -11.124 14.281 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C -0.226 4.226 4 C 0.065 3.935 5 H 0.150 0.850 6 O -0.341 6.341 7 C 0.268 3.732 8 O -0.394 6.394 9 N -0.300 5.300 10 C -0.063 4.063 11 C -0.112 4.112 12 C -0.198 4.198 13 C 0.093 3.907 14 O -0.079 6.079 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.241 4.241 24 C -0.083 4.083 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.234 0.766 31 H 0.236 0.764 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.330 -11.001 14.071 20.633 hybrid contribution -0.516 -0.189 -1.018 1.156 sum -10.846 -11.190 13.054 20.329 Atomic orbital electron populations 1.20893 0.92602 1.02690 1.02312 1.22919 0.96451 0.98561 0.97380 1.23270 0.94765 0.99689 1.04915 1.20714 0.91436 0.83995 0.97371 0.85010 1.86579 1.77268 1.23714 1.46527 1.21436 0.80336 0.82938 0.88503 1.90732 1.39815 1.70677 1.38211 1.43208 1.50840 1.07661 1.28308 1.17273 1.08815 0.92280 0.87913 1.20361 0.99669 0.93015 0.98122 1.19999 1.07989 1.00709 0.91118 1.19413 0.91388 0.90263 0.89605 1.83975 1.67509 1.40977 1.15448 1.21345 1.45524 0.99002 0.80848 0.89003 1.25288 0.96322 0.95436 0.99446 1.70044 1.39826 1.07968 1.31913 0.85706 0.78350 0.79077 0.80309 1.19857 1.20238 1.19122 1.21108 1.07851 0.94890 1.00253 1.20832 0.97688 0.99304 0.90483 0.91794 0.91364 0.91314 0.86306 0.85939 0.76617 0.76352 0.86676 0.86001 0.92000 0.85183 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 10.17 36.01 0.37 -0.41 16 2 C -0.14 -1.01 9.46 -36.02 -0.34 -1.35 16 3 C -0.21 -1.66 9.07 -36.02 -0.33 -1.99 16 4 C 0.13 1.26 3.93 -29.03 -0.11 1.15 16 5 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 6 O -0.54 -5.95 11.84 -55.09 -0.65 -6.60 16 7 C 0.48 6.68 7.00 -10.99 -0.08 6.60 16 8 O -0.52 -9.48 13.76 -14.31 -0.20 -9.68 16 9 N -0.65 -8.62 5.30 -9.82 -0.05 -8.67 16 10 C 0.03 0.52 6.30 -83.62 -0.53 -0.01 16 11 C -0.09 -1.58 9.96 -39.42 -0.39 -1.97 16 12 C -0.18 -3.70 9.98 -39.42 -0.39 -4.09 16 13 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 14 O -0.18 -5.03 9.76 -0.02 0.00 -5.03 16 15 C -0.39 -11.02 9.48 30.88 0.29 -10.73 16 16 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 19 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.22 -5.02 9.16 -39.42 -0.36 -5.38 16 24 C -0.06 -1.28 8.69 -39.41 -0.34 -1.62 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.12 0.86 6.56 -52.48 -0.34 0.52 16 29 H 0.12 0.82 8.05 -52.49 -0.42 0.40 16 30 H 0.38 3.59 8.03 45.56 0.37 3.96 16 31 H 0.40 3.66 8.80 -40.82 -0.36 3.30 16 32 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.13 2.98 5.63 -52.49 -0.30 2.68 16 36 H 0.12 2.47 6.23 -52.49 -0.33 2.14 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -33.93 316.01 -6.30 -40.23 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.33 Total: 9.37 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.57 Total: -15.49 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.71 Total: -33.25 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.85 Total: -21.31 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.93 -6.30 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463544429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.869 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds