Wall clock time and date at job start Mon Mar 30 2020 01:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.30993 * 120.00022 * 2 1 4 4 C 1.50704 * 119.99726 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47187 * 244.99746 * 4 3 2 6 6 O 1.42894 * 109.47178 * 5.00170 * 4 3 2 7 7 C 1.50700 * 109.46775 * 125.00380 * 4 3 2 8 8 O 1.21293 * 119.99629 * 244.99524 * 7 4 3 9 9 N 1.34775 * 119.99947 * 65.00083 * 7 4 3 10 10 C 1.39995 * 119.99915 * 175.49215 * 9 7 4 11 11 C 1.38918 * 120.00409 * 214.84669 * 10 9 7 12 12 C 1.38002 * 119.99492 * 179.79298 * 11 10 9 13 13 C 1.38907 * 120.00512 * 0.46131 * 12 11 10 14 14 O 1.35779 * 119.99756 * 179.76724 * 13 12 11 15 15 C 1.34821 * 116.99793 * 185.36290 * 14 13 12 16 16 H 1.07998 * 119.99840 * 354.96343 * 15 14 13 17 17 C 1.38629 * 119.99728 * 174.96746 * 15 14 13 18 18 N 1.31574 * 120.00214 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99733 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47192 * 89.99697 * 19 17 15 21 21 H 1.48494 * 109.47011 * 209.99717 * 19 17 15 22 22 H 1.48495 * 109.46843 * 329.99623 * 19 17 15 23 23 C 1.38906 * 120.00360 * 359.79364 * 13 12 11 24 24 C 1.38001 * 119.99999 * 359.97422 * 23 13 12 25 25 H 1.09005 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47398 * 300.00122 * 1 2 3 27 27 H 1.09006 * 109.46737 * 59.99990 * 1 2 3 28 28 H 1.08005 * 119.99366 * 179.97438 * 2 1 3 29 29 H 1.07997 * 120.00504 * 0.02562 * 3 2 1 30 30 H 0.96703 * 114.00221 * 60.00220 * 6 4 3 31 31 H 0.97000 * 120.00243 * 355.49537 * 9 7 4 32 32 H 1.08001 * 119.99929 * 0.02562 * 11 10 9 33 33 H 1.08010 * 119.99625 * 180.22968 * 12 11 10 34 34 H 0.97000 * 120.00074 * 180.02562 * 18 17 15 35 35 H 1.07997 * 119.99895 * 179.97438 * 23 13 12 36 36 H 1.07998 * 120.00294 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6690 1.1343 0.0006 5 1 4.0320 1.5689 0.9320 6 8 4.1453 -0.2078 -0.1164 7 6 4.1718 1.9491 -1.1632 8 8 4.7928 1.4121 -2.0561 9 7 3.9314 3.2744 -1.2119 10 6 4.4780 4.0475 -2.2431 11 6 4.8824 5.3528 -1.9931 12 6 5.4251 6.1133 -3.0088 13 6 5.5582 5.5770 -4.2832 14 8 6.0879 6.3270 -5.2834 15 6 6.0871 5.7877 -6.5191 16 1 5.7524 4.7712 -6.6643 17 6 6.5160 6.5379 -7.6030 18 7 6.9233 7.7764 -7.4261 19 14 6.5141 5.7909 -9.3152 20 1 5.2063 6.0525 -9.9680 21 1 7.6011 6.4007 -10.1225 22 1 6.7336 4.3256 -9.2161 23 6 5.1490 4.2736 -4.5344 24 6 4.6107 3.5113 -3.5178 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.0469 -0.9354 0.0004 29 1 1.6221 2.0698 0.0004 30 1 3.8603 -0.6574 -0.9237 31 1 3.3797 3.6925 -0.5324 32 1 4.7755 5.7711 -1.0032 33 1 5.7430 7.1270 -2.8136 34 1 7.2231 8.3015 -8.1846 35 1 5.2522 3.8568 -5.5254 36 1 4.2921 2.4980 -3.7132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463544429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:52 Heat of formation + Delta-G solvation = -91.696532 kcal Electronic energy + Delta-G solvation = -20391.661736 eV Core-core repulsion = 17034.234039 eV Total energy + Delta-G solvation = -3357.427696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69591 -40.52461 -38.75397 -37.70287 -35.60778 -34.88981 -34.18574 -31.89053 -30.91968 -29.10937 -27.34732 -26.13670 -24.01144 -23.13251 -21.60531 -20.42123 -20.05061 -19.36615 -18.70328 -18.07894 -17.70163 -16.77413 -16.37765 -16.16477 -15.58405 -15.42680 -15.32018 -15.24849 -14.67925 -14.27686 -14.14050 -13.97725 -13.62130 -13.58893 -13.29453 -13.22485 -12.83445 -12.71323 -12.46851 -12.17322 -12.14215 -11.92681 -11.42631 -11.13222 -10.83591 -10.54959 -9.95401 -9.83517 -8.64597 -8.48533 -6.15496 0.47151 0.52550 1.10141 1.34200 1.41605 1.51294 1.56805 2.10519 2.17246 2.80015 3.13047 3.22196 3.49715 3.61989 3.81113 4.08764 4.09978 4.19688 4.33866 4.46258 4.56778 4.63899 4.72584 4.83926 4.86022 5.05834 5.10770 5.15086 5.32383 5.42153 5.56150 5.67056 5.68176 5.76727 6.00604 6.13099 6.35700 6.56926 6.96133 7.15096 7.75121 8.74252 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.003342 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.960694 B = 8375.327348 C = 8748.114725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 C -0.215 4.215 4 C 0.139 3.861 5 H 0.158 0.842 6 O -0.548 6.548 7 C 0.482 3.518 8 O -0.565 6.565 9 N -0.641 5.641 10 C 0.058 3.942 11 C -0.075 4.075 12 C -0.181 4.181 13 C 0.107 3.893 14 O -0.227 6.227 15 C -0.415 4.415 16 H 0.097 0.903 17 C -0.020 4.020 18 N -0.918 5.918 19 Si 1.016 2.984 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.231 4.231 24 C -0.076 4.076 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.141 0.859 30 H 0.390 0.610 31 H 0.428 0.572 32 H 0.170 0.830 33 H 0.129 0.871 34 H 0.274 0.726 35 H 0.116 0.884 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 -12.480 16.726 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.152 4.152 3 C -0.233 4.233 4 C 0.077 3.923 5 H 0.175 0.825 6 O -0.355 6.355 7 C 0.270 3.730 8 O -0.444 6.444 9 N -0.289 5.289 10 C -0.036 4.036 11 C -0.095 4.095 12 C -0.200 4.200 13 C 0.057 3.943 14 O -0.133 6.133 15 C -0.491 4.491 16 H 0.114 0.886 17 C -0.217 4.217 18 N -0.556 5.556 19 Si 0.836 3.164 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.251 4.251 24 C -0.096 4.096 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.240 0.760 31 H 0.267 0.733 32 H 0.187 0.813 33 H 0.147 0.853 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.152 -12.386 16.604 24.016 hybrid contribution -0.111 0.030 -1.412 1.417 sum -12.263 -12.357 15.191 23.105 Atomic orbital electron populations 1.20925 0.91506 1.03369 1.02732 1.23116 0.97359 0.98501 0.96181 1.23259 0.93353 1.00702 1.06015 1.20815 0.92693 0.82705 0.96097 0.82467 1.86564 1.77750 1.24235 1.46908 1.22329 0.78998 0.82850 0.88844 1.90728 1.41801 1.71554 1.40299 1.43143 1.50749 1.07420 1.27577 1.17431 1.05684 0.92571 0.87903 1.20812 0.97073 0.92226 0.99380 1.20352 1.07642 1.01573 0.90475 1.19949 0.93079 0.90986 0.90312 1.83938 1.70563 1.42612 1.16218 1.21769 1.46158 0.99560 0.81609 0.88585 1.26528 0.95607 0.95856 1.03750 1.70173 1.42239 1.09790 1.33381 0.84622 0.78936 0.78466 0.74424 1.18603 1.19313 1.18146 1.21100 1.08586 0.94847 1.00544 1.20919 0.98157 0.99225 0.91339 0.91127 0.90306 0.91409 0.86430 0.84162 0.75987 0.73298 0.81310 0.85258 0.91731 0.86659 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 10.17 71.24 0.72 -0.44 16 2 C -0.13 -1.59 9.46 25.65 0.24 -1.35 16 3 C -0.21 -2.63 9.07 25.66 0.23 -2.40 16 4 C 0.14 2.27 3.93 29.10 0.11 2.38 16 5 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 6 O -0.55 -10.87 11.84 -129.99 -1.54 -12.41 16 7 C 0.48 11.92 7.00 87.66 0.61 12.54 16 8 O -0.57 -19.87 13.76 15.92 0.22 -19.65 16 9 N -0.64 -14.29 5.30 -303.36 -1.61 -15.90 16 10 C 0.06 1.87 6.30 38.17 0.24 2.11 16 11 C -0.08 -2.34 9.96 22.38 0.22 -2.12 16 12 C -0.18 -7.39 9.98 22.37 0.22 -7.16 16 13 C 0.11 5.42 6.65 22.59 0.15 5.57 16 14 O -0.23 -13.77 9.76 -22.97 -0.22 -13.99 16 15 C -0.41 -24.71 9.48 67.91 0.64 -24.06 16 16 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.13 5.49 84.82 0.47 -0.66 16 18 N -0.92 -56.56 13.67 21.61 0.30 -56.27 16 19 Si 1.02 43.77 29.55 68.60 2.03 45.79 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 23 C -0.23 -10.85 9.16 22.37 0.20 -10.65 16 24 C -0.08 -3.06 8.69 22.38 0.19 -2.86 16 25 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.12 1.42 6.56 -2.91 -0.02 1.40 16 29 H 0.14 1.22 8.05 -2.91 -0.02 1.20 16 30 H 0.39 6.66 8.03 -74.06 -0.59 6.07 16 31 H 0.43 5.45 8.80 -92.71 -0.82 4.63 16 32 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 33 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.12 5.62 5.63 -2.91 -0.02 5.60 16 36 H 0.12 4.96 6.23 -2.91 -0.02 4.94 16 Total: -1.00 -78.99 316.01 3.17 -75.82 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.28 Total: 25.71 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.27 Total: -29.11 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.31 Total: -72.16 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.54 Total: -46.05 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -78.99 3.17 -75.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463544429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.878 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds