Wall clock time and date at job start Mon Mar 30 2020 01:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30997 * 119.99798 * 2 1 4 4 C 1.50698 * 120.00036 * 4.96552 * 3 2 1 5 5 H 1.08994 * 109.47783 * 4.56878 * 4 3 2 6 6 O 1.42898 * 109.47113 * 124.57838 * 4 3 2 7 7 C 1.50708 * 109.46624 * 244.57431 * 4 3 2 8 8 O 1.21291 * 119.99731 * 244.99646 * 7 4 3 9 9 N 1.34774 * 119.99918 * 65.00081 * 7 4 3 10 10 C 1.39994 * 119.99952 * 175.60988 * 9 7 4 11 11 C 1.38913 * 120.00314 * 215.15362 * 10 9 7 12 12 C 1.38004 * 120.00051 * 179.97438 * 11 10 9 13 13 C 1.38908 * 119.99939 * 0.02764 * 12 11 10 14 14 O 1.35782 * 119.99728 * 179.97438 * 13 12 11 15 15 C 1.34814 * 117.00010 * 5.42076 * 14 13 12 16 16 H 1.08001 * 119.99994 * 354.95848 * 15 14 13 17 17 C 1.38629 * 120.00084 * 174.95434 * 15 14 13 18 18 N 1.31573 * 120.00219 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99886 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47206 * 89.99619 * 19 17 15 21 21 H 1.48500 * 109.46990 * 209.99706 * 19 17 15 22 22 H 1.48500 * 109.46944 * 329.99765 * 19 17 15 23 23 C 1.38907 * 120.00326 * 0.22627 * 13 12 11 24 24 C 1.38004 * 120.00068 * 359.49440 * 23 13 12 25 25 H 1.08994 * 109.47419 * 304.83874 * 1 2 3 26 26 H 1.09003 * 109.47218 * 64.84004 * 1 2 3 27 27 H 1.09001 * 109.47330 * 184.83519 * 1 2 3 28 28 H 1.07993 * 119.99580 * 180.02562 * 2 1 3 29 29 H 1.08006 * 119.99754 * 184.95402 * 3 2 1 30 30 H 0.96697 * 114.00353 * 64.95118 * 6 4 3 31 31 H 0.97002 * 119.99938 * 355.60904 * 9 7 4 32 32 H 1.08000 * 120.00470 * 359.96192 * 11 10 9 33 33 H 1.07998 * 119.99912 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99701 * 180.02562 * 18 17 15 35 35 H 1.07998 * 119.99960 * 179.74630 * 23 13 12 36 36 H 1.08004 * 119.99939 * 180.25436 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4127 2.4371 0.1130 5 1 0.3527 2.2346 0.2661 6 8 1.9199 3.1839 1.2207 7 6 1.5941 3.2324 -1.1543 8 8 2.1879 4.2897 -1.1269 9 7 1.0965 2.7688 -2.3178 10 6 1.1839 3.5491 -3.4769 11 6 0.1599 3.5167 -4.4149 12 6 0.2459 4.2863 -5.5572 13 6 1.3567 5.0929 -5.7692 14 8 1.4416 5.8497 -6.8934 15 6 0.3669 5.8593 -7.7073 16 1 -0.4769 5.2194 -7.4952 17 6 0.3447 6.6907 -8.8164 18 7 -0.7039 6.6998 -9.6110 19 14 1.8044 7.7971 -9.1836 20 1 2.7667 7.0745 -10.0537 21 1 1.3341 9.0231 -9.8770 22 1 2.4727 8.1731 -7.9119 23 6 2.3832 5.1213 -4.8338 24 6 2.2946 4.3561 -3.6887 25 1 -0.3634 0.5870 0.8434 26 1 -0.3634 0.4369 -0.9302 27 1 -0.3634 -1.0240 0.0866 28 1 2.0469 -0.9353 -0.0004 29 1 3.2390 1.1362 -0.0808 30 1 2.8392 3.4654 1.1174 31 1 0.6777 1.8945 -2.3522 32 1 -0.7036 2.8891 -4.2505 33 1 -0.5501 4.2608 -6.2867 34 1 -0.7192 7.2812 -10.3872 35 1 3.2487 5.7453 -5.0007 36 1 3.0909 4.3814 -2.9594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463544433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:55 Heat of formation + Delta-G solvation = -63.660254 kcal Electronic energy + Delta-G solvation = -20576.322679 eV Core-core repulsion = 17220.110727 eV Total energy + Delta-G solvation = -3356.211952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55881 -39.05078 -37.50645 -36.42481 -35.13565 -33.91964 -32.35259 -30.34964 -29.34250 -27.92022 -26.21894 -25.10278 -22.43191 -21.83450 -20.49245 -19.53979 -18.41271 -17.83862 -17.45781 -16.97749 -16.33663 -15.68220 -15.16004 -14.81401 -14.37752 -13.88938 -13.87279 -13.77487 -13.65776 -13.52566 -12.94491 -12.79825 -12.36323 -12.32393 -12.22396 -11.89621 -11.82602 -11.67268 -10.99332 -10.84694 -10.73888 -10.22314 -9.99741 -9.73080 -9.41575 -9.24430 -8.80168 -8.33709 -7.11369 -6.44114 -4.10150 1.58820 1.93476 2.07403 2.65025 3.10462 3.22767 3.24894 3.40466 4.15866 4.22512 4.33268 4.41676 4.54240 4.66325 4.81889 4.84413 4.94436 5.09122 5.19134 5.44288 5.49896 5.56468 5.66811 6.00030 6.06326 6.07845 6.13646 6.25222 6.62459 6.70397 6.85335 7.01780 7.18458 7.21651 7.53691 7.55758 7.75155 7.99110 8.17392 8.91094 9.53038 10.63347 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.003440 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.492742 B = 8138.129976 C = 8605.089764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C -0.201 4.201 4 C 0.122 3.878 5 H 0.130 0.870 6 O -0.533 6.533 7 C 0.481 3.519 8 O -0.520 6.520 9 N -0.654 5.654 10 C 0.039 3.961 11 C -0.090 4.090 12 C -0.207 4.207 13 C 0.154 3.846 14 O -0.215 6.215 15 C -0.390 4.390 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.879 5.879 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.179 4.179 24 C -0.069 4.069 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.385 0.615 31 H 0.402 0.598 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.280 0.720 35 H 0.121 0.879 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -13.158 16.972 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.220 4.220 4 C 0.059 3.941 5 H 0.147 0.853 6 O -0.338 6.338 7 C 0.267 3.733 8 O -0.396 6.396 9 N -0.299 5.299 10 C -0.053 4.053 11 C -0.110 4.110 12 C -0.226 4.226 13 C 0.101 3.899 14 O -0.120 6.120 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.198 4.198 24 C -0.089 4.089 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.234 0.766 31 H 0.237 0.763 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.158 -12.242 16.974 21.165 hybrid contribution 0.702 0.000 -0.647 0.954 sum 3.860 -12.241 16.328 20.769 Atomic orbital electron populations 1.21057 0.93026 1.03285 1.02430 1.22933 0.96482 0.97881 0.97358 1.23248 1.00681 0.93860 1.04184 1.20942 1.00077 0.88134 0.84928 0.85302 1.86614 1.34121 1.73922 1.39167 1.21528 0.79651 0.86684 0.85423 1.90723 1.40452 1.22773 1.85639 1.43237 1.59447 1.19963 1.07285 1.17339 0.97075 1.02014 0.88909 1.20542 0.96227 0.99894 0.94357 1.21099 1.00753 1.01141 0.99631 1.19158 0.93488 0.90736 0.86503 1.83585 1.40199 1.59888 1.28339 1.20763 0.95342 1.25524 1.04919 0.87605 1.24467 0.97812 0.96909 0.94780 1.69651 1.28440 1.38702 1.14879 0.86177 0.81731 0.79582 0.79432 1.19853 1.20787 1.18265 1.20149 1.00047 1.05288 0.94361 1.20719 0.96356 0.95838 0.95987 0.90840 0.91137 0.91290 0.86375 0.86205 0.76562 0.76302 0.86841 0.84414 0.91014 0.86084 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.80 36.01 0.32 -0.42 16 2 C -0.13 -0.80 10.26 -36.02 -0.37 -1.17 16 3 C -0.20 -1.56 9.06 -36.03 -0.33 -1.88 16 4 C 0.12 1.19 3.55 -29.03 -0.10 1.09 16 5 H 0.13 1.08 5.74 -51.93 -0.30 0.78 16 6 O -0.53 -5.91 13.04 -55.09 -0.72 -6.63 16 7 C 0.48 6.43 6.99 -10.98 -0.08 6.36 16 8 O -0.52 -8.98 13.66 -14.31 -0.20 -9.18 16 9 N -0.65 -8.43 5.30 -9.82 -0.05 -8.49 16 10 C 0.04 0.66 6.30 -83.63 -0.53 0.13 16 11 C -0.09 -1.57 9.96 -39.42 -0.39 -1.96 16 12 C -0.21 -4.34 9.16 -39.42 -0.36 -4.70 16 13 C 0.15 3.55 6.65 -39.09 -0.26 3.29 16 14 O -0.22 -5.66 8.58 0.00 0.00 -5.66 16 15 C -0.39 -10.89 9.94 30.88 0.31 -10.58 16 16 H 0.11 2.99 5.43 -52.49 -0.28 2.70 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.21 13.96 55.48 0.77 -24.43 16 19 Si 0.91 21.65 28.62 -169.99 -4.86 16.79 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.18 -3.68 9.98 -39.42 -0.39 -4.07 16 24 C -0.07 -1.29 8.69 -39.41 -0.34 -1.64 16 25 H 0.07 0.39 7.16 -51.93 -0.37 0.02 16 26 H 0.07 0.33 7.72 -51.93 -0.40 -0.07 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 29 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 30 H 0.39 3.45 8.64 45.56 0.39 3.84 16 31 H 0.40 3.81 8.37 -40.82 -0.34 3.47 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 3.00 5.63 -52.49 -0.30 2.71 16 34 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.13 2.35 6.23 -52.48 -0.33 2.02 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -32.42 312.94 -6.14 -38.56 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -3.18 Total: 8.20 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.62 Total: -13.87 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.72 Total: -32.92 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.91 Total: -21.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.42 -6.14 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463544433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.100 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds