Wall clock time and date at job start Mon Mar 30 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30997 * 119.99798 * 2 1 4 4 C 1.50698 * 120.00036 * 4.96552 * 3 2 1 5 5 H 1.08994 * 109.47783 * 4.56878 * 4 3 2 6 6 O 1.42898 * 109.47113 * 124.57838 * 4 3 2 7 7 C 1.50708 * 109.46624 * 244.57431 * 4 3 2 8 8 O 1.21291 * 119.99731 * 244.99646 * 7 4 3 9 9 N 1.34774 * 119.99918 * 65.00081 * 7 4 3 10 10 C 1.39994 * 119.99952 * 175.60988 * 9 7 4 11 11 C 1.38913 * 120.00314 * 215.15362 * 10 9 7 12 12 C 1.38004 * 120.00051 * 179.97438 * 11 10 9 13 13 C 1.38908 * 119.99939 * 0.02764 * 12 11 10 14 14 O 1.35782 * 119.99728 * 179.97438 * 13 12 11 15 15 C 1.34814 * 117.00010 * 5.42076 * 14 13 12 16 16 H 1.08001 * 119.99994 * 354.95848 * 15 14 13 17 17 C 1.38629 * 120.00084 * 174.95434 * 15 14 13 18 18 N 1.31573 * 120.00219 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99886 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47206 * 89.99619 * 19 17 15 21 21 H 1.48500 * 109.46990 * 209.99706 * 19 17 15 22 22 H 1.48500 * 109.46944 * 329.99765 * 19 17 15 23 23 C 1.38907 * 120.00326 * 0.22627 * 13 12 11 24 24 C 1.38004 * 120.00068 * 359.49440 * 23 13 12 25 25 H 1.08994 * 109.47419 * 304.83874 * 1 2 3 26 26 H 1.09003 * 109.47218 * 64.84004 * 1 2 3 27 27 H 1.09001 * 109.47330 * 184.83519 * 1 2 3 28 28 H 1.07993 * 119.99580 * 180.02562 * 2 1 3 29 29 H 1.08006 * 119.99754 * 184.95402 * 3 2 1 30 30 H 0.96697 * 114.00353 * 64.95118 * 6 4 3 31 31 H 0.97002 * 119.99938 * 355.60904 * 9 7 4 32 32 H 1.08000 * 120.00470 * 359.96192 * 11 10 9 33 33 H 1.07998 * 119.99912 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99701 * 180.02562 * 18 17 15 35 35 H 1.07998 * 119.99960 * 179.74630 * 23 13 12 36 36 H 1.08004 * 119.99939 * 180.25436 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4127 2.4371 0.1130 5 1 0.3527 2.2346 0.2661 6 8 1.9199 3.1839 1.2207 7 6 1.5941 3.2324 -1.1543 8 8 2.1879 4.2897 -1.1269 9 7 1.0965 2.7688 -2.3178 10 6 1.1839 3.5491 -3.4769 11 6 0.1599 3.5167 -4.4149 12 6 0.2459 4.2863 -5.5572 13 6 1.3567 5.0929 -5.7692 14 8 1.4416 5.8497 -6.8934 15 6 0.3669 5.8593 -7.7073 16 1 -0.4769 5.2194 -7.4952 17 6 0.3447 6.6907 -8.8164 18 7 -0.7039 6.6998 -9.6110 19 14 1.8044 7.7971 -9.1836 20 1 2.7667 7.0745 -10.0537 21 1 1.3341 9.0231 -9.8770 22 1 2.4727 8.1731 -7.9119 23 6 2.3832 5.1213 -4.8338 24 6 2.2946 4.3561 -3.6887 25 1 -0.3634 0.5870 0.8434 26 1 -0.3634 0.4369 -0.9302 27 1 -0.3634 -1.0240 0.0866 28 1 2.0469 -0.9353 -0.0004 29 1 3.2390 1.1362 -0.0808 30 1 2.8392 3.4654 1.1174 31 1 0.6777 1.8945 -2.3522 32 1 -0.7036 2.8891 -4.2505 33 1 -0.5501 4.2608 -6.2867 34 1 -0.7192 7.2812 -10.3872 35 1 3.2487 5.7453 -5.0007 36 1 3.0909 4.3814 -2.9594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463544433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:54 Heat of formation + Delta-G solvation = -86.560064 kcal Electronic energy + Delta-G solvation = -20577.315689 eV Core-core repulsion = 17220.110727 eV Total energy + Delta-G solvation = -3357.204962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.76098 -40.64912 -38.74307 -37.65742 -35.99145 -35.09471 -34.35362 -31.93802 -30.47671 -28.93520 -27.37509 -26.61476 -24.01718 -23.20387 -21.80261 -20.22385 -19.89315 -19.30317 -19.11610 -18.18517 -17.32427 -16.70850 -16.47707 -16.14284 -15.81515 -15.69325 -15.40983 -15.10175 -14.49720 -14.32557 -14.20267 -14.15939 -14.07908 -13.53727 -13.46653 -13.29931 -12.79463 -12.68819 -12.63291 -12.46822 -12.01236 -11.56849 -11.47915 -11.14091 -10.82925 -10.65047 -10.06306 -9.89253 -8.72463 -8.50033 -6.21387 0.41024 0.47271 1.07059 1.32068 1.34780 1.50062 1.52227 2.00376 2.28207 2.74108 3.00416 3.15418 3.40600 3.59156 3.83217 3.94682 4.01300 4.08397 4.31482 4.43795 4.48116 4.54464 4.68031 4.83478 5.03243 5.07623 5.12510 5.14398 5.34417 5.46232 5.50656 5.60555 5.74087 5.75046 5.87574 6.15711 6.33346 6.57415 6.84545 7.07479 7.58202 8.61171 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.003440 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.492742 B = 8138.129976 C = 8605.089764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.222 4.222 4 C 0.134 3.866 5 H 0.148 0.852 6 O -0.548 6.548 7 C 0.482 3.518 8 O -0.560 6.560 9 N -0.642 5.642 10 C 0.066 3.934 11 C -0.082 4.082 12 C -0.214 4.214 13 C 0.115 3.885 14 O -0.244 6.244 15 C -0.399 4.399 16 H 0.087 0.913 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.266 1.266 23 C -0.178 4.178 24 C -0.076 4.076 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.392 0.608 31 H 0.423 0.577 32 H 0.156 0.844 33 H 0.123 0.877 34 H 0.285 0.715 35 H 0.127 0.873 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -15.114 19.216 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.240 4.240 4 C 0.072 3.928 5 H 0.165 0.835 6 O -0.354 6.354 7 C 0.270 3.730 8 O -0.438 6.438 9 N -0.290 5.290 10 C -0.028 4.028 11 C -0.102 4.102 12 C -0.234 4.234 13 C 0.066 3.934 14 O -0.151 6.151 15 C -0.475 4.475 16 H 0.105 0.895 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.190 1.190 23 C -0.198 4.198 24 C -0.096 4.096 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.139 0.861 30 H 0.243 0.757 31 H 0.262 0.738 32 H 0.173 0.827 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.465 -14.261 19.270 24.222 hybrid contribution 0.595 0.354 -0.981 1.200 sum 4.060 -13.907 18.289 23.332 Atomic orbital electron populations 1.21177 0.92220 1.04332 1.02889 1.23202 0.97197 0.97880 0.94286 1.23095 1.00724 0.93120 1.07099 1.20995 1.01386 0.88116 0.82321 0.83544 1.86587 1.34887 1.74340 1.39615 1.22344 0.78076 0.86267 0.86330 1.90712 1.42079 1.24725 1.86320 1.43182 1.59414 1.20485 1.05908 1.17477 0.95601 1.00235 0.89484 1.20836 0.97492 0.99199 0.92695 1.21164 0.99843 1.01656 1.00734 1.19607 0.95298 0.91784 0.86737 1.83531 1.39724 1.62099 1.29778 1.20744 0.95583 1.25495 1.05683 0.89530 1.25220 1.00379 0.98339 0.94688 1.69725 1.30222 1.40328 1.15877 0.85273 0.78650 0.78275 0.78903 1.18958 1.19287 1.19030 1.20332 0.99631 1.05475 0.94350 1.20906 0.97369 0.95954 0.95355 0.90745 0.90260 0.90052 0.84834 0.86137 0.75738 0.73791 0.82678 0.85924 0.90569 0.85472 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.80 71.24 0.63 -0.30 16 2 C -0.11 -0.91 10.26 25.65 0.26 -0.64 16 3 C -0.22 -2.71 9.06 25.65 0.23 -2.48 16 4 C 0.13 2.22 3.55 29.10 0.10 2.33 16 5 H 0.15 1.90 5.74 -2.39 -0.01 1.88 16 6 O -0.55 -10.98 13.04 -129.99 -1.70 -12.68 16 7 C 0.48 11.56 6.99 87.66 0.61 12.17 16 8 O -0.56 -18.35 13.66 15.93 0.22 -18.14 16 9 N -0.64 -14.30 5.30 -303.37 -1.61 -15.91 16 10 C 0.07 2.06 6.30 38.16 0.24 2.30 16 11 C -0.08 -2.67 9.96 22.38 0.22 -2.45 16 12 C -0.21 -9.06 9.16 22.37 0.20 -8.86 16 13 C 0.12 5.43 6.65 22.59 0.15 5.58 16 14 O -0.24 -13.29 8.58 -22.93 -0.20 -13.49 16 15 C -0.40 -23.26 9.94 67.91 0.68 -22.58 16 16 H 0.09 5.19 5.43 -2.91 -0.02 5.18 16 17 C 0.01 0.71 5.49 84.83 0.47 1.18 16 18 N -0.92 -54.53 13.96 21.61 0.30 -54.23 16 19 Si 0.97 45.63 28.62 68.60 1.96 47.59 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 23 C -0.18 -7.33 9.98 22.37 0.22 -7.10 16 24 C -0.08 -2.73 8.69 22.38 0.19 -2.54 16 25 H 0.07 0.49 7.16 -2.39 -0.02 0.48 16 26 H 0.08 0.38 7.72 -2.39 -0.02 0.36 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.13 0.77 8.06 -2.91 -0.02 0.74 16 29 H 0.12 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.39 6.46 8.64 -74.06 -0.64 5.82 16 31 H 0.42 6.08 8.37 -92.71 -0.78 5.31 16 32 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.12 5.56 5.63 -2.91 -0.02 5.54 16 34 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 36 H 0.14 4.79 6.23 -2.91 -0.02 4.77 16 Total: -1.00 -72.40 312.94 2.92 -69.48 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.28 Total: 20.77 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.22 Total: -23.39 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.30 Total: -70.14 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.67 Total: -44.30 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.96 Total: 47.59 kcal Total: -72.40 2.92 -69.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463544433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.083 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds