Wall clock time and date at job start Mon Mar 30 2020 01:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99933 * 2 1 4 4 H 1.08998 * 109.47509 * 245.00564 * 3 2 1 5 5 O 1.42900 * 109.47160 * 5.00567 * 3 2 1 6 6 C 1.50704 * 109.46835 * 125.00280 * 3 2 1 7 7 O 1.21275 * 119.99712 * 244.99597 * 6 3 2 8 8 N 1.34772 * 119.99782 * 65.00401 * 6 3 2 9 9 C 1.46503 * 119.99884 * 179.97438 * 8 6 3 10 10 C 1.50701 * 109.46930 * 179.97438 * 9 8 6 11 11 C 1.38307 * 119.92751 * 269.72328 * 10 9 8 12 12 C 1.38105 * 120.06147 * 179.73104 * 11 10 9 13 13 C 1.38872 * 119.93430 * 0.56469 * 12 11 10 14 14 O 1.35750 * 120.06955 * 179.68276 * 13 12 11 15 15 C 1.34838 * 116.99807 * 174.49013 * 14 13 12 16 16 H 1.07994 * 119.99916 * 5.06161 * 15 14 13 17 17 C 1.38659 * 119.99657 * 185.05899 * 15 14 13 18 18 N 1.31560 * 120.00104 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47048 * 60.00237 * 19 17 15 21 21 H 1.48507 * 109.46707 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47248 * 299.99794 * 19 17 15 23 23 C 1.38887 * 119.86270 * 359.71205 * 13 12 11 24 24 C 1.38093 * 119.92815 * 359.97438 * 23 13 12 25 25 H 1.08002 * 119.99620 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99625 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00208 * 180.02562 * 2 1 3 28 28 H 0.96698 * 114.00087 * 59.99967 * 5 3 2 29 29 H 0.97000 * 120.00153 * 359.97438 * 8 6 3 30 30 H 1.09004 * 109.47330 * 299.99817 * 9 8 6 31 31 H 1.08996 * 109.47063 * 60.00187 * 9 8 6 32 32 H 1.07994 * 119.96598 * 359.97438 * 11 10 9 33 33 H 1.07999 * 120.02925 * 180.28229 * 12 11 10 34 34 H 0.96992 * 120.00155 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.03351 * 179.97438 * 23 13 12 36 36 H 1.07999 * 119.96394 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6212 1.4027 -0.9314 5 8 1.1394 2.3887 0.1176 6 6 3.0205 1.3326 1.1639 7 8 2.8661 2.1384 2.0569 8 7 4.0480 0.4618 1.2121 9 6 4.9786 0.4888 2.3432 10 6 6.0270 -0.5775 2.1567 11 6 5.8179 -1.8471 2.6641 12 6 6.7744 -2.8279 2.4900 13 6 7.9521 -2.5353 1.8148 14 8 8.8970 -3.4956 1.6477 15 6 9.9637 -3.1788 0.8863 16 1 10.0784 -2.1734 0.5090 17 6 10.9135 -4.1439 0.5877 18 7 10.7735 -5.3688 1.0470 19 14 12.3917 -3.7048 -0.4665 20 1 13.1704 -2.6283 0.1967 21 1 13.2514 -4.9036 -0.6372 22 1 11.9287 -3.2336 -1.7965 23 6 8.1616 -1.2579 1.3115 24 6 7.1986 -0.2832 1.4832 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 0.6076 2.3663 0.9249 29 1 4.1713 -0.1829 0.4979 30 1 5.4590 1.4659 2.3953 31 1 4.4322 0.3028 3.2678 32 1 4.9040 -2.0726 3.1935 33 1 6.6085 -3.8203 2.8824 34 1 11.4380 -6.0438 0.8384 35 1 9.0768 -1.0271 0.7864 36 1 7.3607 0.7102 1.0917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584655179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:06 Heat of formation + Delta-G solvation = -70.787668 kcal Electronic energy + Delta-G solvation = -20168.889109 eV Core-core repulsion = 16812.368089 eV Total energy + Delta-G solvation = -3356.521020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20821 -39.16042 -37.41576 -36.72067 -34.59978 -33.05443 -32.39959 -30.38088 -30.20355 -27.77707 -25.76337 -24.51605 -22.10754 -21.20785 -20.71552 -20.14279 -18.25837 -18.09160 -17.13095 -16.91396 -16.53367 -15.41793 -15.00003 -14.76902 -14.60891 -14.39710 -13.99416 -13.75684 -13.48269 -13.28700 -12.87213 -12.83029 -12.59322 -12.13635 -11.80396 -11.71444 -11.45380 -11.19562 -10.98801 -10.85132 -10.75544 -10.53537 -10.29525 -9.48061 -9.46999 -9.08249 -8.93962 -8.34029 -7.37688 -6.56654 -4.15819 1.75379 2.01875 2.07891 2.50635 3.06097 3.06814 3.10575 3.27006 3.87370 3.97680 4.37579 4.45930 4.69237 4.85830 4.97831 5.03086 5.11899 5.19661 5.36027 5.50483 5.60684 5.74489 5.84435 6.07233 6.14969 6.24722 6.29497 6.38758 6.54660 6.75150 6.90380 7.08204 7.14589 7.21887 7.30530 7.47938 7.66504 7.87767 8.08840 8.88461 9.55958 10.60692 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.003026 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.968537 B = 9252.382698 C = 9259.557680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.197 4.197 3 C 0.120 3.880 4 H 0.134 0.866 5 O -0.536 6.536 6 C 0.487 3.513 7 O -0.541 6.541 8 N -0.716 5.716 9 C 0.178 3.822 10 C -0.217 4.217 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.161 3.839 14 O -0.172 6.172 15 C -0.395 4.395 16 H 0.093 0.907 17 C 0.041 3.959 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.237 4.237 24 C -0.050 4.050 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.383 0.617 29 H 0.403 0.597 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.272 0.728 35 H 0.128 0.872 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.200 8.461 -2.506 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.215 4.215 3 C 0.057 3.943 4 H 0.151 0.849 5 O -0.342 6.342 6 C 0.272 3.728 7 O -0.418 6.418 8 N -0.368 5.368 9 C 0.056 3.944 10 C -0.218 4.218 11 C -0.073 4.073 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.075 6.075 15 C -0.471 4.471 16 H 0.111 0.889 17 C -0.164 4.164 18 N -0.493 5.493 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.256 4.256 24 C -0.069 4.069 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.143 0.857 28 H 0.233 0.767 29 H 0.238 0.762 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.886 8.748 -2.342 16.578 hybrid contribution 0.747 -0.390 -0.351 0.913 sum -13.139 8.359 -2.693 15.803 Atomic orbital electron populations 1.23913 0.95888 1.02792 0.97916 1.23463 0.97089 0.98053 1.02939 1.20822 0.89611 0.86117 0.97760 0.84911 1.86582 1.53626 1.47418 1.46529 1.21381 0.82248 0.80929 0.88253 1.90708 1.73796 1.38237 1.39075 1.46386 1.28258 1.36339 1.25827 1.20012 0.88564 0.97565 0.88291 1.19190 0.97308 0.95214 1.10109 1.20525 0.97480 0.91934 0.97361 1.20215 0.93686 1.00142 1.07434 1.19441 0.88928 0.88636 0.92407 1.83980 1.27553 1.35420 1.60509 1.21320 0.98632 0.97834 1.29301 0.88935 1.25324 0.98922 0.94571 0.97585 1.70022 1.35232 1.02048 1.42002 0.85761 0.79665 0.78299 0.79628 1.19396 1.20178 1.19389 1.21163 1.01836 0.93663 1.08954 1.20645 0.92638 0.97835 0.95799 0.87645 0.87476 0.85744 0.76717 0.76232 0.91477 0.91494 0.86988 0.86359 0.91771 0.85385 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 13.92 29.01 0.40 -0.81 16 2 C -0.20 -1.57 9.46 -36.03 -0.34 -1.91 16 3 C 0.12 1.13 3.93 -29.03 -0.11 1.02 16 4 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 5 O -0.54 -5.60 11.84 -55.09 -0.65 -6.25 16 6 C 0.49 6.00 7.15 -10.99 -0.08 5.92 16 7 O -0.54 -8.70 16.32 -14.30 -0.23 -8.93 16 8 N -0.72 -8.28 5.50 -61.47 -0.34 -8.62 16 9 C 0.18 2.38 5.80 -5.19 -0.03 2.35 16 10 C -0.22 -3.34 5.25 -104.57 -0.55 -3.89 16 11 C -0.05 -0.88 9.69 -39.60 -0.38 -1.26 16 12 C -0.20 -3.83 9.99 -39.40 -0.39 -4.22 16 13 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 14 O -0.17 -4.70 9.76 0.03 0.00 -4.70 16 15 C -0.39 -10.59 9.49 30.89 0.29 -10.30 16 16 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 17 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -24.39 13.67 55.48 0.76 -23.64 16 19 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.24 -4.79 9.17 -39.39 -0.36 -5.15 16 24 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 25 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 26 H 0.11 0.72 6.56 -52.49 -0.34 0.38 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.38 3.23 8.03 45.56 0.37 3.60 16 29 H 0.40 4.00 8.46 -40.82 -0.35 3.66 16 30 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.13 2.61 5.64 -52.48 -0.30 2.31 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -31.62 320.44 -6.36 -37.98 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.40 Total: 9.70 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.29 Total: -15.09 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.42 Total: -32.26 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.89 Total: -19.89 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.62 -6.36 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584655179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.813 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds