Wall clock time and date at job start Mon Mar 30 2020 01:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99933 * 2 1 4 4 H 1.08998 * 109.47509 * 245.00564 * 3 2 1 5 5 O 1.42900 * 109.47160 * 5.00567 * 3 2 1 6 6 C 1.50704 * 109.46835 * 125.00280 * 3 2 1 7 7 O 1.21275 * 119.99712 * 244.99597 * 6 3 2 8 8 N 1.34772 * 119.99782 * 65.00401 * 6 3 2 9 9 C 1.46503 * 119.99884 * 179.97438 * 8 6 3 10 10 C 1.50701 * 109.46930 * 179.97438 * 9 8 6 11 11 C 1.38307 * 119.92751 * 269.72328 * 10 9 8 12 12 C 1.38105 * 120.06147 * 179.73104 * 11 10 9 13 13 C 1.38872 * 119.93430 * 0.56469 * 12 11 10 14 14 O 1.35750 * 120.06955 * 179.68276 * 13 12 11 15 15 C 1.34838 * 116.99807 * 174.49013 * 14 13 12 16 16 H 1.07994 * 119.99916 * 5.06161 * 15 14 13 17 17 C 1.38659 * 119.99657 * 185.05899 * 15 14 13 18 18 N 1.31560 * 120.00104 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47048 * 60.00237 * 19 17 15 21 21 H 1.48507 * 109.46707 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47248 * 299.99794 * 19 17 15 23 23 C 1.38887 * 119.86270 * 359.71205 * 13 12 11 24 24 C 1.38093 * 119.92815 * 359.97438 * 23 13 12 25 25 H 1.08002 * 119.99620 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99625 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00208 * 180.02562 * 2 1 3 28 28 H 0.96698 * 114.00087 * 59.99967 * 5 3 2 29 29 H 0.97000 * 120.00153 * 359.97438 * 8 6 3 30 30 H 1.09004 * 109.47330 * 299.99817 * 9 8 6 31 31 H 1.08996 * 109.47063 * 60.00187 * 9 8 6 32 32 H 1.07994 * 119.96598 * 359.97438 * 11 10 9 33 33 H 1.07999 * 120.02925 * 180.28229 * 12 11 10 34 34 H 0.96992 * 120.00155 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.03351 * 179.97438 * 23 13 12 36 36 H 1.07999 * 119.96394 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6212 1.4027 -0.9314 5 8 1.1394 2.3887 0.1176 6 6 3.0205 1.3326 1.1639 7 8 2.8661 2.1384 2.0569 8 7 4.0480 0.4618 1.2121 9 6 4.9786 0.4888 2.3432 10 6 6.0270 -0.5775 2.1567 11 6 5.8179 -1.8471 2.6641 12 6 6.7744 -2.8279 2.4900 13 6 7.9521 -2.5353 1.8148 14 8 8.8970 -3.4956 1.6477 15 6 9.9637 -3.1788 0.8863 16 1 10.0784 -2.1734 0.5090 17 6 10.9135 -4.1439 0.5877 18 7 10.7735 -5.3688 1.0470 19 14 12.3917 -3.7048 -0.4665 20 1 13.1704 -2.6283 0.1967 21 1 13.2514 -4.9036 -0.6372 22 1 11.9287 -3.2336 -1.7965 23 6 8.1616 -1.2579 1.3115 24 6 7.1986 -0.2832 1.4832 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 0.6076 2.3663 0.9249 29 1 4.1713 -0.1829 0.4979 30 1 5.4590 1.4659 2.3953 31 1 4.4322 0.3028 3.2678 32 1 4.9040 -2.0726 3.1935 33 1 6.6085 -3.8203 2.8824 34 1 11.4380 -6.0438 0.8384 35 1 9.0768 -1.0271 0.7864 36 1 7.3607 0.7102 1.0917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584655179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:06 Heat of formation + Delta-G solvation = -93.527567 kcal Electronic energy + Delta-G solvation = -20169.875185 eV Core-core repulsion = 16812.368089 eV Total energy + Delta-G solvation = -3357.507096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23536 -40.71201 -38.67810 -37.88544 -35.76416 -34.30925 -33.70024 -31.86023 -31.55458 -28.76672 -27.49139 -25.84158 -23.65453 -22.27682 -22.01675 -20.84400 -19.88766 -19.22177 -18.75473 -17.67725 -17.47643 -16.62459 -16.44485 -16.12307 -15.92621 -15.60414 -15.46300 -15.25977 -14.82946 -14.40421 -14.26581 -13.96321 -13.67838 -13.45501 -13.21312 -13.02777 -12.55615 -12.49666 -12.39284 -12.24817 -12.15143 -11.92735 -11.21191 -11.07692 -10.80319 -10.24033 -10.12788 -9.81873 -9.01349 -8.48702 -6.17126 0.53045 0.57029 1.15725 1.36001 1.45522 1.51700 1.58412 2.16957 2.25036 2.84424 3.16467 3.27436 3.48016 3.70897 3.82481 3.93428 4.02106 4.16734 4.27448 4.41391 4.44522 4.55962 4.73379 4.79733 4.98904 5.03263 5.13593 5.25777 5.36449 5.51750 5.60757 5.67736 5.68705 5.73825 6.00882 6.15067 6.38751 6.60522 6.96103 7.14483 7.75097 8.73883 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.003026 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.968537 B = 9252.382698 C = 9259.557680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.207 4.207 3 C 0.126 3.874 4 H 0.149 0.851 5 O -0.549 6.549 6 C 0.489 3.511 7 O -0.580 6.580 8 N -0.707 5.707 9 C 0.182 3.818 10 C -0.183 4.183 11 C -0.043 4.043 12 C -0.205 4.205 13 C 0.123 3.877 14 O -0.229 6.229 15 C -0.415 4.415 16 H 0.104 0.896 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.017 2.983 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.256 1.256 23 C -0.244 4.244 24 C -0.046 4.046 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.390 0.610 29 H 0.414 0.586 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.115 0.885 34 H 0.273 0.727 35 H 0.120 0.880 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.946 10.514 -3.239 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.226 4.226 3 C 0.064 3.936 4 H 0.166 0.834 5 O -0.355 6.355 6 C 0.276 3.724 7 O -0.460 6.460 8 N -0.360 5.360 9 C 0.060 3.940 10 C -0.184 4.184 11 C -0.061 4.061 12 C -0.224 4.224 13 C 0.072 3.928 14 O -0.135 6.135 15 C -0.491 4.491 16 H 0.121 0.879 17 C -0.218 4.218 18 N -0.557 5.557 19 Si 0.836 3.164 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.263 4.263 24 C -0.064 4.064 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.152 0.848 28 H 0.241 0.759 29 H 0.250 0.750 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.166 0.834 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.684 10.835 -3.080 19.310 hybrid contribution 0.911 -0.792 -0.010 1.207 sum -14.773 10.044 -3.090 18.129 Atomic orbital electron populations 1.24113 0.95798 1.03621 0.96410 1.23454 0.97345 0.97537 1.04247 1.20878 0.89123 0.86736 0.96910 0.83359 1.86564 1.53804 1.48073 1.47064 1.21878 0.82188 0.79922 0.88391 1.90697 1.74740 1.39808 1.40766 1.46190 1.27752 1.36543 1.25534 1.19908 0.88255 0.96576 0.89306 1.19476 0.96911 0.95243 1.06757 1.20879 0.97613 0.91201 0.96409 1.20455 0.93559 1.01182 1.07185 1.20002 0.89541 0.89211 0.94066 1.83950 1.29065 1.37563 1.62902 1.21802 0.99122 0.98578 1.29607 0.87883 1.26572 1.02055 0.94291 0.98927 1.70168 1.37004 1.03508 1.44993 0.84670 0.75488 0.78260 0.77981 1.18240 1.19768 1.18017 1.21250 1.02567 0.93558 1.08950 1.20944 0.91966 0.98311 0.95225 0.86313 0.87238 0.84755 0.75920 0.74980 0.91228 0.90828 0.83410 0.86663 0.91771 0.86195 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 13.92 67.78 0.94 -0.92 16 2 C -0.21 -2.67 9.46 25.64 0.24 -2.43 16 3 C 0.13 2.02 3.93 29.10 0.11 2.14 16 4 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 5 O -0.55 -10.20 11.84 -129.99 -1.54 -11.74 16 6 C 0.49 10.59 7.15 87.66 0.63 11.22 16 7 O -0.58 -17.30 16.32 15.98 0.26 -17.03 16 8 N -0.71 -13.73 5.50 -466.79 -2.57 -16.30 16 9 C 0.18 4.16 5.80 85.63 0.50 4.66 16 10 C -0.18 -4.98 5.25 -19.83 -0.10 -5.09 16 11 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 12 C -0.20 -7.96 9.99 22.39 0.22 -7.74 16 13 C 0.12 5.72 6.65 22.58 0.15 5.87 16 14 O -0.23 -13.21 9.76 -22.82 -0.22 -13.43 16 15 C -0.42 -23.29 9.49 67.92 0.64 -22.65 16 16 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 17 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 18 N -0.92 -55.04 13.67 21.61 0.30 -54.75 16 19 Si 1.02 41.43 29.55 68.60 2.03 43.46 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 23 C -0.24 -9.80 9.17 22.39 0.21 -9.59 16 24 C -0.05 -1.42 9.69 22.25 0.22 -1.20 16 25 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 26 H 0.11 1.19 6.56 -2.91 -0.02 1.17 16 27 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 28 H 0.39 5.83 8.03 -74.06 -0.59 5.24 16 29 H 0.41 6.55 8.46 -92.71 -0.78 5.77 16 30 H 0.07 1.65 8.09 -2.38 -0.02 1.63 16 31 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 36 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -72.49 320.44 2.44 -70.05 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.26 Total: 27.18 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 4.44 Total: -27.43 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -2.27 Total: -71.05 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.50 Total: -42.20 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -72.49 2.44 -70.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584655179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.480 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds