Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00015 * 2 1 4 4 H 1.09002 * 109.47225 * 244.99622 * 3 2 1 5 5 N 1.46896 * 109.47077 * 5.00097 * 3 2 1 6 6 C 1.46905 * 111.00155 * 274.99740 * 5 3 2 7 7 C 1.50698 * 109.47044 * 180.02562 * 6 5 3 8 8 C 1.38297 * 119.93202 * 90.00061 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12 18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12 19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38106 * 119.92542 * 359.44577 * 20 10 9 22 22 C 1.50704 * 109.46877 * 125.00323 * 3 2 1 23 23 O 1.20822 * 119.99429 * 239.99945 * 22 3 2 24 24 O 1.34231 * 120.00063 * 59.99892 * 22 3 2 25 25 H 1.08001 * 120.00042 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99811 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99692 * 180.02562 * 2 1 3 28 28 H 1.00900 * 111.00180 * 38.95820 * 5 3 2 29 29 H 1.09003 * 109.46647 * 59.99968 * 6 5 3 30 30 H 1.09004 * 109.46926 * 300.00194 * 6 5 3 31 31 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 32 32 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 35 35 H 1.07997 * 119.96326 * 180.27708 * 21 20 10 36 36 H 0.96701 * 116.99533 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6214 1.4026 -0.9314 5 7 1.1135 2.4190 0.1207 6 6 0.5792 2.8000 -1.1936 7 6 -0.3889 3.9433 -1.0300 8 6 0.0664 5.2476 -1.0940 9 6 -0.8182 6.2975 -0.9440 10 6 -2.1664 6.0423 -0.7291 11 8 -3.0384 7.0722 -0.5817 12 6 -2.5535 8.3163 -0.7683 13 1 -1.4979 8.4641 -0.9422 14 6 -3.4102 9.4062 -0.7370 15 7 -4.6961 9.2262 -0.5256 16 14 -2.7385 11.1298 -0.9962 17 1 -2.7705 11.4611 -2.4435 18 1 -3.5722 12.1039 -0.2469 19 1 -1.3388 11.1949 -0.5044 20 6 -2.6196 4.7314 -0.6600 21 6 -1.7309 3.6859 -0.8166 22 6 3.0205 1.3326 1.1639 23 8 2.9212 2.1919 2.0073 24 8 3.9831 0.4023 1.2634 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 0.3684 2.1909 0.7617 29 1 0.0642 1.9479 -1.6373 30 1 1.3983 3.1082 -1.8433 31 1 1.1148 5.4454 -1.2615 32 1 -0.4619 7.3157 -0.9936 33 1 -5.2953 9.9887 -0.5033 34 1 -3.6667 4.5298 -0.4886 35 1 -2.0835 2.6663 -0.7675 36 1 4.5731 0.4612 2.0273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588700536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -58.095050 kcal Electronic energy + Delta-G solvation = -20373.948827 eV Core-core repulsion = 17017.978201 eV Total energy + Delta-G solvation = -3355.970627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.49123 -39.11872 -37.79964 -36.36130 -36.04010 -32.70724 -32.07010 -30.17514 -29.78916 -27.54188 -25.50789 -23.89130 -22.15766 -21.92946 -20.51328 -19.83381 -18.08421 -17.96962 -17.19976 -16.89094 -16.71566 -15.54468 -15.04429 -14.63455 -14.51484 -14.30457 -14.02624 -13.53222 -13.38655 -13.27645 -12.78424 -12.66322 -12.48533 -11.97901 -11.77043 -11.61097 -11.52295 -11.26516 -10.90468 -10.80567 -10.66507 -10.56702 -10.42734 -9.80431 -9.33453 -8.84275 -8.58170 -8.17455 -7.20441 -6.45436 -4.04017 1.70522 2.18030 2.21132 2.25621 2.86732 3.13764 3.14445 3.19302 3.97075 4.10877 4.43796 4.65075 4.83985 4.91854 5.08483 5.11270 5.22929 5.29170 5.36307 5.53493 5.71195 5.77490 5.84868 6.14185 6.20530 6.21988 6.35914 6.41873 6.68044 6.78337 6.90864 7.06695 7.13431 7.28032 7.40129 7.44690 7.81556 7.82074 7.99908 9.00356 9.69994 10.72553 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032049 B = 0.003274 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.464815 B = 8551.358997 C = 9087.400366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.189 4.189 3 C 0.126 3.874 4 H 0.125 0.875 5 N -0.666 5.666 6 C 0.117 3.883 7 C -0.189 4.189 8 C -0.045 4.045 9 C -0.235 4.235 10 C 0.158 3.842 11 O -0.177 6.177 12 C -0.392 4.392 13 H 0.093 0.907 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.194 4.194 21 C -0.068 4.068 22 C 0.483 3.517 23 O -0.488 6.488 24 O -0.523 6.523 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.354 0.646 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.270 0.730 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 -16.941 -0.688 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.208 4.208 3 C 0.014 3.986 4 H 0.142 0.858 5 N -0.301 5.301 6 C -0.010 4.010 7 C -0.191 4.191 8 C -0.064 4.064 9 C -0.255 4.255 10 C 0.104 3.896 11 O -0.080 6.080 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.213 4.213 21 C -0.086 4.086 22 C 0.322 3.678 23 O -0.373 6.373 24 O -0.335 6.335 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.141 0.859 28 H 0.176 0.824 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 12.433 -16.047 -0.699 20.312 hybrid contribution 0.182 0.194 0.263 0.374 sum 12.615 -15.853 -0.436 20.265 Atomic orbital electron populations 1.24136 0.96017 1.03157 0.98259 1.23453 0.96526 0.98397 1.02465 1.20049 0.93279 0.89679 0.95609 0.85758 1.60245 1.20999 1.36412 1.12419 1.20759 0.96352 0.95238 0.88618 1.19007 0.93266 0.93562 1.13239 1.20578 0.98011 0.91704 0.96096 1.21173 0.93344 0.99725 1.11224 1.19410 0.89348 0.89025 0.91861 1.83973 1.34800 1.13427 1.75804 1.21348 0.94662 0.79869 1.50919 0.88994 1.25297 0.95056 0.99593 0.96557 1.70037 1.02675 1.31812 1.45214 0.85707 0.78833 0.80196 0.78684 1.19864 1.20250 1.19136 1.20155 0.99770 0.90102 1.11292 1.20462 0.92471 0.97226 0.98477 1.23289 0.79618 0.77997 0.86859 1.90753 1.70336 1.35662 1.40542 1.84510 1.43505 1.53662 1.51791 0.87314 0.87497 0.85882 0.82352 0.94355 0.90713 0.87422 0.85545 0.92000 0.86559 0.87468 0.73309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 12.86 29.01 0.37 -1.12 16 2 C -0.19 -1.58 9.38 -36.03 -0.34 -1.92 16 3 C 0.13 1.26 3.04 -70.02 -0.21 1.05 16 4 H 0.12 1.05 7.80 -51.93 -0.41 0.65 16 5 N -0.67 -8.43 5.54 -110.45 -0.61 -9.04 16 6 C 0.12 1.48 5.00 -4.97 -0.02 1.45 16 7 C -0.19 -3.13 5.40 -104.58 -0.56 -3.69 16 8 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 9 C -0.24 -5.16 9.17 -39.39 -0.36 -5.52 16 10 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 11 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 12 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 13 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -25.37 13.67 55.48 0.76 -24.62 16 16 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.19 -4.04 9.99 -39.39 -0.39 -4.44 16 21 C -0.07 -1.16 9.69 -39.61 -0.38 -1.54 16 22 C 0.48 5.43 7.68 36.01 0.28 5.71 16 23 O -0.49 -7.51 17.19 -18.75 -0.32 -7.83 16 24 O -0.52 -4.13 13.34 -39.26 -0.52 -4.66 16 25 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 26 H 0.11 1.01 4.98 -52.49 -0.26 0.75 16 27 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.35 4.61 6.68 -39.29 -0.26 4.35 16 29 H 0.04 0.42 6.62 -51.93 -0.34 0.08 16 30 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 31 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.41 1.64 9.10 45.56 0.41 2.06 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -33.36 316.53 -6.12 -39.48 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -3.09 Total: 8.77 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -2.08 Total: -17.41 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.15 Total: -33.66 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.85 Total: -17.56 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.36 -6.12 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588700536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.611 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds