Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00015 * 2 1 4 4 H 1.09002 * 109.47225 * 244.99622 * 3 2 1 5 5 N 1.46896 * 109.47077 * 5.00097 * 3 2 1 6 6 C 1.46905 * 111.00155 * 274.99740 * 5 3 2 7 7 C 1.50698 * 109.47044 * 180.02562 * 6 5 3 8 8 C 1.38297 * 119.93202 * 90.00061 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12 18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12 19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38106 * 119.92542 * 359.44577 * 20 10 9 22 22 C 1.50704 * 109.46877 * 125.00323 * 3 2 1 23 23 O 1.20822 * 119.99429 * 239.99945 * 22 3 2 24 24 O 1.34231 * 120.00063 * 59.99892 * 22 3 2 25 25 H 1.08001 * 120.00042 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99811 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99692 * 180.02562 * 2 1 3 28 28 H 1.00900 * 111.00180 * 38.95820 * 5 3 2 29 29 H 1.09003 * 109.46647 * 59.99968 * 6 5 3 30 30 H 1.09004 * 109.46926 * 300.00194 * 6 5 3 31 31 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 32 32 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 35 35 H 1.07997 * 119.96326 * 180.27708 * 21 20 10 36 36 H 0.96701 * 116.99533 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6214 1.4026 -0.9314 5 7 1.1135 2.4190 0.1207 6 6 0.5792 2.8000 -1.1936 7 6 -0.3889 3.9433 -1.0300 8 6 0.0664 5.2476 -1.0940 9 6 -0.8182 6.2975 -0.9440 10 6 -2.1664 6.0423 -0.7291 11 8 -3.0384 7.0722 -0.5817 12 6 -2.5535 8.3163 -0.7683 13 1 -1.4979 8.4641 -0.9422 14 6 -3.4102 9.4062 -0.7370 15 7 -4.6961 9.2262 -0.5256 16 14 -2.7385 11.1298 -0.9962 17 1 -2.7705 11.4611 -2.4435 18 1 -3.5722 12.1039 -0.2469 19 1 -1.3388 11.1949 -0.5044 20 6 -2.6196 4.7314 -0.6600 21 6 -1.7309 3.6859 -0.8166 22 6 3.0205 1.3326 1.1639 23 8 2.9212 2.1919 2.0073 24 8 3.9831 0.4023 1.2634 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 0.3684 2.1909 0.7617 29 1 0.0642 1.9479 -1.6373 30 1 1.3983 3.1082 -1.8433 31 1 1.1148 5.4454 -1.2615 32 1 -0.4619 7.3157 -0.9936 33 1 -5.2953 9.9887 -0.5033 34 1 -3.6667 4.5298 -0.4886 35 1 -2.0835 2.6663 -0.7675 36 1 4.5731 0.4612 2.0273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588700536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -82.542374 kcal Electronic energy + Delta-G solvation = -20375.008943 eV Core-core repulsion = 17017.978201 eV Total energy + Delta-G solvation = -3357.030742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34938 -40.76597 -39.00189 -37.70220 -36.92538 -34.39415 -33.37100 -31.77684 -30.93934 -28.64836 -27.39578 -25.16533 -23.62705 -22.84017 -22.04228 -20.53176 -19.84289 -18.94982 -18.75352 -17.96746 -17.57800 -16.52834 -16.40859 -16.12715 -15.86139 -15.70526 -15.49122 -14.99242 -14.74072 -14.51711 -14.26272 -13.90398 -13.60879 -13.21471 -13.07854 -12.93563 -12.59528 -12.44944 -12.38612 -12.27105 -12.13469 -11.97390 -11.67635 -11.17451 -10.79747 -10.46726 -9.76542 -9.49205 -8.91986 -8.47684 -6.15688 0.61630 0.66043 1.05491 1.34680 1.40279 1.43873 1.52118 2.12574 2.17768 2.80525 3.11300 3.39885 3.52686 3.75625 4.01000 4.09374 4.17541 4.23342 4.30049 4.39418 4.51018 4.61030 4.70109 4.83812 4.96933 5.10429 5.16168 5.30868 5.51941 5.57035 5.60223 5.68879 5.72802 5.80444 5.94240 6.03198 6.24256 6.25224 6.97264 7.09623 7.78152 8.75642 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032049 B = 0.003274 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.464815 B = 8551.358997 C = 9087.400366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.186 4.186 3 C 0.126 3.874 4 H 0.146 0.854 5 N -0.684 5.684 6 C 0.123 3.877 7 C -0.161 4.161 8 C -0.050 4.050 9 C -0.247 4.247 10 C 0.115 3.885 11 O -0.233 6.233 12 C -0.414 4.414 13 H 0.100 0.900 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.255 1.255 20 C -0.206 4.206 21 C -0.057 4.057 22 C 0.489 3.511 23 O -0.539 6.539 24 O -0.510 6.510 25 H 0.125 0.875 26 H 0.097 0.903 27 H 0.141 0.859 28 H 0.350 0.650 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.273 0.727 34 H 0.114 0.886 35 H 0.151 0.849 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.352 -19.513 -1.549 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C 0.014 3.986 4 H 0.163 0.837 5 N -0.319 5.319 6 C -0.004 4.004 7 C -0.162 4.162 8 C -0.068 4.068 9 C -0.266 4.266 10 C 0.064 3.936 11 O -0.139 6.139 12 C -0.491 4.491 13 H 0.117 0.883 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.837 3.163 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.178 1.178 20 C -0.225 4.225 21 C -0.075 4.075 22 C 0.331 3.669 23 O -0.427 6.427 24 O -0.324 6.324 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.169 0.831 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 15.144 -18.701 -1.569 24.115 hybrid contribution -0.408 0.568 0.538 0.882 sum 14.736 -18.133 -1.032 23.389 Atomic orbital electron populations 1.24237 0.96103 1.03494 0.98008 1.23445 0.96476 0.98051 1.02616 1.20136 0.92826 0.89639 0.95968 0.83664 1.60100 1.21332 1.38403 1.12058 1.20764 0.96131 0.94288 0.89227 1.19569 0.93947 0.94285 1.08412 1.20925 0.98756 0.91734 0.95412 1.21257 0.93126 1.00417 1.11812 1.19980 0.90175 0.89454 0.93956 1.83934 1.36665 1.14271 1.79058 1.21815 0.95335 0.80553 1.51349 0.88272 1.26582 0.95265 1.04125 0.96017 1.70178 1.04364 1.33253 1.48098 0.84595 0.78542 0.74027 0.79102 1.18653 1.19506 1.17838 1.20458 1.00684 0.89905 1.11430 1.20921 0.92183 0.98186 0.96213 1.23542 0.79713 0.77342 0.86343 1.90747 1.71790 1.37759 1.42447 1.84466 1.42990 1.52201 1.52698 0.85699 0.88489 0.84150 0.82771 0.91727 0.89068 0.84821 0.86736 0.91811 0.86804 0.83097 0.71229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 12.86 67.78 0.87 -1.42 16 2 C -0.19 -2.33 9.38 25.65 0.24 -2.09 16 3 C 0.13 2.03 3.04 43.42 0.13 2.17 16 4 H 0.15 1.75 7.80 -2.39 -0.02 1.73 16 5 N -0.68 -14.90 5.54 -503.36 -2.79 -17.69 16 6 C 0.12 2.53 5.00 85.56 0.43 2.96 16 7 C -0.16 -4.82 5.40 -19.84 -0.11 -4.93 16 8 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 9 C -0.25 -11.06 9.17 22.39 0.21 -10.86 16 10 C 0.11 5.81 6.65 22.58 0.15 5.96 16 11 O -0.23 -14.27 9.76 -22.72 -0.22 -14.49 16 12 C -0.41 -24.67 9.49 67.92 0.64 -24.02 16 13 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 14 C -0.02 -1.30 5.49 84.84 0.47 -0.83 16 15 N -0.92 -57.26 13.67 21.62 0.30 -56.96 16 16 Si 1.02 43.66 29.55 68.60 2.03 45.68 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 20 C -0.21 -8.67 9.99 22.39 0.22 -8.45 16 21 C -0.06 -1.80 9.69 22.25 0.22 -1.58 16 22 C 0.49 9.62 7.68 71.24 0.55 10.17 16 23 O -0.54 -15.73 17.19 21.98 0.38 -15.36 16 24 O -0.51 -6.37 13.34 -51.43 -0.69 -7.06 16 25 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 26 H 0.10 1.42 4.98 -2.91 -0.01 1.41 16 27 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 28 H 0.35 8.05 6.68 -89.69 -0.60 7.45 16 29 H 0.06 1.06 6.62 -2.39 -0.02 1.04 16 30 H 0.09 1.67 8.00 -2.39 -0.02 1.65 16 31 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 32 H 0.11 5.29 5.64 -2.91 -0.02 5.27 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.43 2.17 9.10 -74.06 -0.67 1.50 16 Total: -1.00 -78.43 316.53 3.10 -75.33 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.14 Total: 25.01 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 4.23 Total: -34.47 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -2.49 Total: -74.65 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.53 Total: -36.91 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -78.43 3.10 -75.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588700536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.213 kcal (2) G-P(sol) polarization free energy of solvation -78.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds