Wall clock time and date at job start Mon Mar 30 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 H 1.08999 * 109.47115 * 55.00004 * 3 2 1 5 5 C 1.50699 * 109.47068 * 174.99993 * 3 2 1 6 6 H 1.08001 * 119.99666 * 119.99877 * 5 3 2 7 7 C 1.37879 * 120.00186 * 299.99873 * 5 3 2 8 8 N 1.31516 * 119.99742 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99677 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46965 * 90.00216 * 9 7 5 11 11 H 1.48503 * 109.47040 * 209.99818 * 9 7 5 12 12 H 1.48493 * 109.47385 * 329.99640 * 9 7 5 13 13 N 1.46502 * 109.46971 * 294.99883 * 3 2 1 14 14 C 1.34775 * 120.00079 * 85.00181 * 13 3 2 15 15 O 1.21556 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.47857 * 120.00377 * 179.97438 * 14 13 3 17 17 C 1.39711 * 120.06804 * 359.97438 * 16 14 13 18 18 C 1.38063 * 120.15474 * 179.69871 * 17 16 14 19 19 C 1.38085 * 120.30466 * 0.27746 * 18 17 16 20 20 C 1.39722 * 120.13697 * 359.97438 * 19 18 17 21 21 C 1.47745 * 120.08017 * 180.02562 * 20 19 18 22 22 O 1.21464 * 120.00240 * 179.97438 * 21 20 19 23 23 O 1.34708 * 119.99769 * 359.97438 * 21 20 19 24 24 C 1.39287 * 120.07327 * 180.22547 * 16 14 13 25 25 H 1.09002 * 109.47258 * 299.99842 * 1 2 3 26 26 H 1.09002 * 109.47212 * 60.00281 * 1 2 3 27 27 H 1.09000 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47262 * 239.99766 * 2 1 3 29 29 H 1.09002 * 109.47212 * 119.99719 * 2 1 3 30 30 H 0.97003 * 119.99392 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00269 * 265.00095 * 13 3 2 32 32 H 1.08002 * 119.92574 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.85290 * 180.29792 * 18 17 16 34 34 H 1.07996 * 119.93601 * 179.97438 * 19 18 17 35 35 H 0.96696 * 116.99708 * 180.02562 * 23 21 20 36 36 H 1.07996 * 120.14973 * 0.02562 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8796 1.3357 9 14 3.0964 0.1089 2.5700 10 1 2.8756 -1.3272 2.2633 11 1 3.7936 0.2348 3.8751 12 1 1.7877 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3414 2.6318 -0.4324 16 6 0.0441 3.3259 -2.6302 17 6 0.9356 3.3646 -3.7052 18 6 0.5700 3.9764 -4.8877 19 6 -0.6755 4.5588 -5.0148 20 6 -1.5749 4.5320 -3.9459 21 6 -2.9074 5.1551 -4.0835 22 8 -3.6884 5.1305 -3.1535 23 8 -3.2563 5.7504 -5.2404 24 6 -1.2118 3.9163 -2.7492 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8771 0.4818 2.1127 31 1 2.2719 2.1231 -1.9978 32 1 1.9114 2.9110 -3.6126 33 1 1.2612 3.9993 -5.7172 34 1 -0.9551 5.0361 -5.9424 35 1 -4.1383 6.1445 -5.2827 36 1 -1.9029 3.8931 -1.9197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:52 Heat of formation + Delta-G solvation = -100.530530 kcal Electronic energy + Delta-G solvation = -20968.404811 eV Core-core repulsion = 17610.594044 eV Total energy + Delta-G solvation = -3357.810767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69100 -39.70742 -38.11611 -36.32871 -35.39245 -32.76268 -32.03090 -31.30526 -30.84251 -27.57783 -24.92006 -24.08737 -22.59224 -21.56895 -20.84009 -19.70758 -18.56828 -17.99871 -16.84279 -16.23227 -15.89327 -15.86806 -15.81152 -15.01943 -14.55469 -14.45988 -14.05287 -13.66841 -13.37998 -13.08319 -12.84201 -12.33142 -12.14931 -11.95047 -11.83125 -11.77146 -11.50930 -11.11674 -10.93724 -10.85459 -10.65426 -9.95868 -9.64117 -9.33347 -9.30861 -9.25550 -9.17082 -8.79093 -8.14459 -6.24542 -4.27582 0.39050 0.90355 2.23172 2.70570 3.14502 3.21939 3.34254 3.39235 3.78292 3.90177 4.29037 4.57592 4.68666 4.71037 4.98052 5.06386 5.09289 5.30912 5.50061 5.68800 5.94219 5.98524 6.00536 6.08466 6.10199 6.17098 6.22224 6.51102 6.63325 6.67959 6.80383 6.93273 7.19829 7.24759 7.45709 7.63102 8.07933 8.44129 8.70036 8.82479 9.35895 10.87353 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.004124 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.695372 B = 6788.470993 C = 7309.970465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.692 5.692 14 C 0.544 3.456 15 O -0.540 6.540 16 C -0.133 4.133 17 C -0.050 4.050 18 C -0.140 4.140 19 C -0.046 4.046 20 C -0.141 4.141 21 C 0.529 3.471 22 O -0.509 6.509 23 O -0.514 6.514 24 C 0.000 4.000 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.268 0.732 31 H 0.394 0.606 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.414 0.586 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 6.294 -15.072 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.340 5.340 14 C 0.329 3.671 15 O -0.419 6.419 16 C -0.136 4.136 17 C -0.069 4.069 18 C -0.157 4.157 19 C -0.064 4.064 20 C -0.142 4.142 21 C 0.373 3.627 22 O -0.398 6.398 23 O -0.326 6.326 24 C -0.019 4.019 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.273 0.727 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.670 6.015 -13.980 19.179 hybrid contribution -0.602 -0.232 0.310 0.716 sum -12.272 5.783 -13.670 19.259 Atomic orbital electron populations 1.21890 0.96888 0.99165 1.02316 1.22290 0.94402 0.99807 1.01223 1.19213 0.95766 0.88580 0.82561 0.93056 1.21022 0.88467 1.40034 1.07977 0.90160 1.24823 0.94877 0.95072 0.97652 1.69866 1.08686 1.44379 1.29825 0.86906 0.80999 0.79981 0.80895 1.20185 1.22116 1.18399 1.46117 1.14403 1.55363 1.18141 1.18058 0.82953 0.79328 0.86725 1.90769 1.51483 1.59910 1.39770 1.20207 0.95167 1.02528 0.95727 1.21772 0.98953 0.94197 0.91940 1.21129 0.96760 0.99629 0.98226 1.21601 0.92542 0.94607 0.97677 1.18934 0.92558 1.06175 0.96547 1.20839 0.87291 0.75051 0.79543 1.90923 1.52401 1.56325 1.40125 1.84537 1.40933 1.68740 1.38360 1.21392 0.95044 0.89516 0.95950 0.92775 0.92962 0.94863 0.92218 0.92649 0.92228 0.77150 0.84368 0.84398 0.84187 0.72712 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.51 37.16 0.32 -2.60 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.60 1.83 -69.08 -0.13 5.48 16 4 H 0.05 1.32 6.64 -51.93 -0.34 0.98 16 5 C -0.54 -14.14 9.31 -34.44 -0.32 -14.46 16 6 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 9 Si 0.88 21.48 24.41 -169.99 -4.15 17.33 16 10 H -0.27 -6.48 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.69 -13.23 4.97 -55.87 -0.28 -13.51 16 14 C 0.54 10.12 6.34 -12.32 -0.08 10.04 16 15 O -0.54 -11.80 13.47 5.32 0.07 -11.72 16 16 C -0.13 -1.94 5.87 -105.02 -0.62 -2.56 16 17 C -0.05 -0.56 9.54 -39.10 -0.37 -0.93 16 18 C -0.14 -1.24 10.02 -39.70 -0.40 -1.64 16 19 C -0.05 -0.42 9.61 -39.08 -0.38 -0.80 16 20 C -0.14 -1.67 5.87 -105.03 -0.62 -2.28 16 21 C 0.53 6.10 8.27 34.62 0.29 6.39 16 22 O -0.51 -7.55 17.13 -19.24 -0.33 -7.88 16 23 O -0.51 -3.92 12.67 -40.51 -0.51 -4.43 16 24 C 0.00 0.00 9.14 -38.76 -0.35 -0.35 16 25 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 26 H 0.05 1.03 5.64 -51.93 -0.29 0.73 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.27 3.21 -51.93 -0.17 1.11 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.39 6.46 6.56 -40.82 -0.27 6.19 16 32 H 0.14 1.35 6.39 -52.49 -0.34 1.01 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.96 7.60 -52.49 -0.40 0.56 16 35 H 0.41 1.32 9.11 45.56 0.42 1.74 16 36 H 0.15 2.39 7.23 -52.49 -0.38 2.01 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -33.35 302.80 -5.80 -39.15 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.05 Total: 6.49 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.89 Total: -4.79 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.50 Total: -38.70 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.77 Total: -24.04 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.15 Total: 17.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.35 -5.80 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.380 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds