Wall clock time and date at job start Mon Mar 30 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 H 1.08999 * 109.47115 * 55.00004 * 3 2 1 5 5 C 1.50699 * 109.47068 * 174.99993 * 3 2 1 6 6 H 1.08001 * 119.99666 * 119.99877 * 5 3 2 7 7 C 1.37879 * 120.00186 * 299.99873 * 5 3 2 8 8 N 1.31516 * 119.99742 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99677 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46965 * 90.00216 * 9 7 5 11 11 H 1.48503 * 109.47040 * 209.99818 * 9 7 5 12 12 H 1.48493 * 109.47385 * 329.99640 * 9 7 5 13 13 N 1.46502 * 109.46971 * 294.99883 * 3 2 1 14 14 C 1.34775 * 120.00079 * 85.00181 * 13 3 2 15 15 O 1.21556 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.47857 * 120.00377 * 179.97438 * 14 13 3 17 17 C 1.39711 * 120.06804 * 359.97438 * 16 14 13 18 18 C 1.38063 * 120.15474 * 179.69871 * 17 16 14 19 19 C 1.38085 * 120.30466 * 0.27746 * 18 17 16 20 20 C 1.39722 * 120.13697 * 359.97438 * 19 18 17 21 21 C 1.47745 * 120.08017 * 180.02562 * 20 19 18 22 22 O 1.21464 * 120.00240 * 179.97438 * 21 20 19 23 23 O 1.34708 * 119.99769 * 359.97438 * 21 20 19 24 24 C 1.39287 * 120.07327 * 180.22547 * 16 14 13 25 25 H 1.09002 * 109.47258 * 299.99842 * 1 2 3 26 26 H 1.09002 * 109.47212 * 60.00281 * 1 2 3 27 27 H 1.09000 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47262 * 239.99766 * 2 1 3 29 29 H 1.09002 * 109.47212 * 119.99719 * 2 1 3 30 30 H 0.97003 * 119.99392 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00269 * 265.00095 * 13 3 2 32 32 H 1.08002 * 119.92574 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.85290 * 180.29792 * 18 17 16 34 34 H 1.07996 * 119.93601 * 179.97438 * 19 18 17 35 35 H 0.96696 * 116.99708 * 180.02562 * 23 21 20 36 36 H 1.07996 * 120.14973 * 0.02562 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8796 1.3357 9 14 3.0964 0.1089 2.5700 10 1 2.8756 -1.3272 2.2633 11 1 3.7936 0.2348 3.8751 12 1 1.7877 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3414 2.6318 -0.4324 16 6 0.0441 3.3259 -2.6302 17 6 0.9356 3.3646 -3.7052 18 6 0.5700 3.9764 -4.8877 19 6 -0.6755 4.5588 -5.0148 20 6 -1.5749 4.5320 -3.9459 21 6 -2.9074 5.1551 -4.0835 22 8 -3.6884 5.1305 -3.1535 23 8 -3.2563 5.7504 -5.2404 24 6 -1.2118 3.9163 -2.7492 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8771 0.4818 2.1127 31 1 2.2719 2.1231 -1.9978 32 1 1.9114 2.9110 -3.6126 33 1 1.2612 3.9993 -5.7172 34 1 -0.9551 5.0361 -5.9424 35 1 -4.1383 6.1445 -5.2827 36 1 -1.9029 3.8931 -1.9197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589463921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:52 Heat of formation + Delta-G solvation = -125.370682 kcal Electronic energy + Delta-G solvation = -20969.481961 eV Core-core repulsion = 17610.594044 eV Total energy + Delta-G solvation = -3358.887917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66557 -40.95386 -39.22897 -37.15455 -37.10810 -34.50761 -33.69869 -32.26723 -32.05277 -29.43900 -25.81881 -25.42407 -24.31714 -22.48476 -22.27787 -21.25691 -19.83414 -18.89918 -18.46658 -17.57659 -17.26252 -17.04457 -16.74278 -16.45618 -16.11651 -15.64301 -15.24517 -15.02213 -14.79303 -14.38784 -14.23043 -13.88015 -13.68536 -13.46239 -13.01483 -12.96113 -12.77803 -12.62759 -12.50203 -12.38787 -11.87537 -11.77214 -11.41284 -11.25259 -10.90465 -10.83855 -10.24655 -10.14486 -9.79523 -8.38605 -6.43890 -0.49780 -0.08438 1.26591 1.34252 1.35548 1.44966 1.90646 1.97777 2.25730 2.38897 2.79622 2.97693 3.65386 3.78969 3.89281 4.04175 4.11383 4.21538 4.30048 4.35458 4.46344 4.65597 4.82231 4.85905 4.98563 5.08477 5.12777 5.17584 5.23629 5.26638 5.38470 5.49509 5.52646 5.59617 5.69634 6.13149 6.57351 6.80598 6.92147 7.17950 7.37574 8.76226 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.004124 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.695372 B = 6788.470993 C = 7309.970465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.932 3.068 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.264 1.264 13 N -0.690 5.690 14 C 0.544 3.456 15 O -0.581 6.581 16 C -0.155 4.155 17 C -0.045 4.045 18 C -0.123 4.123 19 C -0.023 4.023 20 C -0.151 4.151 21 C 0.536 3.464 22 O -0.553 6.553 23 O -0.495 6.495 24 C -0.017 4.017 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.270 0.730 31 H 0.407 0.593 32 H 0.153 0.847 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.435 0.565 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 6.480 -18.133 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.144 3.856 4 H 0.039 0.961 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.760 3.240 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.188 1.188 13 N -0.340 5.340 14 C 0.332 3.668 15 O -0.463 6.463 16 C -0.158 4.158 17 C -0.064 4.064 18 C -0.141 4.141 19 C -0.041 4.041 20 C -0.152 4.152 21 C 0.382 3.618 22 O -0.445 6.445 23 O -0.309 6.309 24 C -0.036 4.036 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.244 0.756 32 H 0.171 0.829 33 H 0.199 0.801 34 H 0.194 0.806 35 H 0.298 0.702 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.210 6.217 -17.103 21.915 hybrid contribution -0.455 -0.158 1.084 1.187 sum -12.665 6.059 -16.019 21.301 Atomic orbital electron populations 1.21777 0.95501 1.00588 1.01438 1.22209 0.95568 0.98413 1.01318 1.18842 0.93506 0.89699 0.83576 0.96061 1.21253 0.90031 1.38665 1.07140 0.92023 1.25482 0.95664 0.95848 0.99690 1.69962 1.10121 1.46052 1.30820 0.86100 0.79288 0.80077 0.78566 1.18398 1.22086 1.18829 1.45884 1.15228 1.55574 1.17274 1.18644 0.81955 0.78433 0.87800 1.90740 1.52503 1.61332 1.41693 1.19822 0.96397 1.04585 0.94980 1.21991 0.98746 0.93970 0.91701 1.21595 0.97075 0.97301 0.98089 1.22034 0.91674 0.92715 0.97658 1.19014 0.93506 1.06263 0.96424 1.20802 0.86796 0.74496 0.79755 1.90915 1.53614 1.58133 1.41838 1.84472 1.42620 1.67880 1.35943 1.21190 0.94725 0.91182 0.96526 0.94629 0.92970 0.92142 0.90859 0.93668 0.92043 0.75552 0.82945 0.80067 0.80622 0.70219 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.51 71.98 0.61 -4.76 16 2 C -0.14 -5.88 5.11 30.59 0.16 -5.72 16 3 C 0.25 11.65 1.83 44.25 0.08 11.73 16 4 H 0.02 1.14 6.64 -2.39 -0.02 1.12 16 5 C -0.53 -28.47 9.31 25.60 0.24 -28.23 16 6 H 0.06 3.45 7.98 -2.91 -0.02 3.43 16 7 C 0.03 1.86 5.45 84.65 0.46 2.32 16 8 N -0.93 -55.04 13.96 21.45 0.30 -54.74 16 9 Si 0.93 44.65 24.41 68.60 1.67 46.32 16 10 H -0.26 -11.60 6.83 99.48 0.68 -10.92 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.26 -12.70 6.53 99.48 0.65 -12.05 16 13 N -0.69 -26.54 4.97 -448.96 -2.23 -28.77 16 14 C 0.54 20.64 6.34 86.79 0.55 21.19 16 15 O -0.58 -26.53 13.47 -3.89 -0.05 -26.58 16 16 C -0.15 -4.46 5.87 -20.12 -0.12 -4.58 16 17 C -0.05 -0.90 9.54 22.58 0.22 -0.68 16 18 C -0.12 -1.59 10.02 22.19 0.22 -1.37 16 19 C -0.02 -0.32 9.61 22.59 0.22 -0.10 16 20 C -0.15 -3.30 5.87 -20.13 -0.12 -3.42 16 21 C 0.54 11.58 8.27 70.34 0.58 12.16 16 22 O -0.55 -16.56 17.13 19.95 0.34 -16.22 16 23 O -0.50 -5.92 12.67 -56.18 -0.71 -6.64 16 24 C -0.02 -0.49 9.14 22.80 0.21 -0.28 16 25 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 26 H 0.05 2.05 5.64 -2.39 -0.01 2.03 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.05 2.03 3.21 -2.39 -0.01 2.03 16 30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.41 13.14 6.56 -92.71 -0.61 12.53 16 32 H 0.15 2.52 6.39 -2.91 -0.02 2.50 16 33 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 34 H 0.18 1.28 7.60 -2.91 -0.02 1.26 16 35 H 0.44 1.42 9.11 -74.06 -0.67 0.75 16 36 H 0.12 4.14 7.23 -2.91 -0.02 4.12 16 Total: -1.00 -75.62 302.80 2.41 -73.21 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.22 Total: 15.14 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 3.31 Total: -1.73 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.93 Total: -83.51 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.42 Total: -49.44 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Total: -75.62 2.41 -73.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.157 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds