Wall clock time and date at job start Mon Mar 30 2020 01:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21529 * 120.00412 * 359.97438 * 14 13 3 16 16 C 1.48042 * 120.00094 * 180.02562 * 14 13 3 17 17 C 1.39558 * 119.99192 * 359.72404 * 16 14 13 18 18 C 1.37821 * 120.00293 * 179.72244 * 17 16 14 19 19 C 1.39596 * 119.99352 * 0.55339 * 18 17 16 20 20 C 1.47933 * 120.00381 * 179.70210 * 19 18 17 21 21 O 1.21447 * 119.99694 * 180.02562 * 20 19 18 22 22 O 1.34688 * 119.99790 * 0.02562 * 20 19 18 23 23 C 1.39597 * 119.99047 * 359.71719 * 19 18 17 24 24 C 1.37813 * 119.99794 * 0.02562 * 23 19 18 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 1.07997 * 120.00126 * 0.02562 * 17 16 14 33 33 H 1.07996 * 120.00157 * 180.25091 * 18 17 16 34 34 H 0.96701 * 116.99919 * 180.02562 * 22 20 19 35 35 H 1.08006 * 120.00102 * 179.97438 * 23 19 18 36 36 H 1.07994 * 120.00279 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3365 2.6302 -0.4623 16 6 0.0713 3.3158 -2.6603 17 6 0.9759 3.3532 -3.7222 18 6 0.6218 3.9593 -4.9082 19 6 -0.6377 4.5461 -5.0432 20 6 -1.0156 5.2026 -6.3139 21 8 -2.1112 5.7134 -6.4310 22 8 -0.1447 5.2337 -7.3408 23 6 -1.5403 4.5135 -3.9788 24 6 -1.1878 3.9026 -2.7949 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5270 2.3971 31 1 2.2931 2.1156 -1.9978 32 1 1.9518 2.9028 -3.6164 33 1 1.3204 3.9847 -5.7314 34 1 -0.4365 5.6742 -8.1507 35 1 -2.5147 4.9677 -4.0829 36 1 -1.8858 3.8777 -1.9712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589464109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:57 Heat of formation + Delta-G solvation = -109.460768 kcal Electronic energy + Delta-G solvation = -20819.023354 eV Core-core repulsion = 17460.825342 eV Total energy + Delta-G solvation = -3358.198011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70678 -39.74700 -38.08463 -36.37928 -35.30164 -32.67936 -32.08725 -31.32975 -30.74496 -27.65082 -25.45944 -23.11266 -22.60236 -22.02906 -20.55329 -19.64997 -18.47276 -18.12479 -17.44619 -16.38785 -15.90804 -15.83813 -15.13821 -14.95044 -14.61191 -14.30787 -13.90189 -13.69789 -13.43773 -12.98276 -12.83998 -12.48686 -12.25857 -11.95353 -11.88682 -11.81878 -11.29544 -10.99911 -10.94025 -10.76589 -10.74417 -10.05273 -9.90851 -9.38722 -9.26526 -9.24466 -9.20590 -8.76893 -8.13096 -6.28785 -4.33213 0.22788 1.15770 2.12617 2.69468 3.15979 3.23054 3.31117 3.37810 3.75762 3.90862 4.27933 4.53547 4.71387 4.75190 5.03286 5.11118 5.19903 5.26392 5.49326 5.78946 5.97029 6.00091 6.03826 6.07991 6.13774 6.18344 6.24342 6.54331 6.59724 6.73389 6.88410 6.94240 7.21562 7.26864 7.45771 7.57824 8.03655 8.44550 8.69336 8.80792 9.32547 10.82731 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.003968 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.011305 B = 7055.213384 C = 7447.274671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.692 5.692 14 C 0.536 3.464 15 O -0.542 6.542 16 C -0.082 4.082 17 C -0.103 4.103 18 C -0.067 4.067 19 C -0.119 4.119 20 C 0.529 3.471 21 O -0.515 6.515 22 O -0.511 6.511 23 C -0.063 4.063 24 C -0.079 4.079 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.414 0.586 35 H 0.142 0.858 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 4.560 -14.124 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.340 5.340 14 C 0.321 3.679 15 O -0.422 6.422 16 C -0.086 4.086 17 C -0.122 4.122 18 C -0.085 4.085 19 C -0.121 4.121 20 C 0.373 3.627 21 O -0.404 6.404 22 O -0.322 6.322 23 C -0.081 4.081 24 C -0.098 4.098 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.273 0.727 35 H 0.159 0.841 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.087 4.452 -12.963 17.018 hybrid contribution -0.220 0.454 -0.105 0.515 sum -10.307 4.906 -13.067 17.351 Atomic orbital electron populations 1.21916 0.97393 0.98998 1.02022 1.22098 0.93701 0.99303 1.01412 1.19216 0.95692 0.89143 0.82445 0.93008 1.20987 0.88499 1.52647 0.95055 0.90272 1.24911 0.94880 0.93521 0.98871 1.69874 1.09629 1.48329 1.24473 0.86931 0.81315 0.79567 0.82377 1.19817 1.18213 1.21133 1.46573 1.14030 1.54989 1.18397 1.18282 0.83199 0.79580 0.86809 1.90743 1.50901 1.59965 1.40565 1.20658 0.94974 0.98031 0.94901 1.21454 0.99811 0.98676 0.92245 1.21391 0.94872 0.94406 0.97846 1.19150 0.96775 1.04232 0.91906 1.20982 0.81576 0.76304 0.83810 1.90884 1.22868 1.43932 1.82733 1.84562 1.47749 1.74271 1.25664 1.21225 0.99218 0.96475 0.91179 1.21274 0.95818 0.95208 0.97455 0.94973 0.93034 0.93211 0.92883 0.91915 0.92160 0.77185 0.84202 0.83914 0.72698 0.84060 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.53 37.16 0.32 -2.50 16 2 C -0.13 -2.63 5.54 -26.73 -0.15 -2.78 16 3 C 0.24 5.36 1.82 -69.08 -0.13 5.24 16 4 H 0.05 1.29 4.92 -51.93 -0.26 1.03 16 5 C -0.53 -13.79 9.05 -34.44 -0.31 -14.10 16 6 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 9 Si 0.87 20.95 26.69 -169.99 -4.54 16.42 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -6.06 6.88 56.52 0.39 -5.67 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.69 -13.08 4.98 -55.81 -0.28 -13.36 16 14 C 0.54 9.76 6.38 -12.24 -0.08 9.68 16 15 O -0.54 -11.44 13.47 5.34 0.07 -11.37 16 16 C -0.08 -1.18 5.88 -104.89 -0.62 -1.79 16 17 C -0.10 -1.21 9.53 -39.24 -0.37 -1.58 16 18 C -0.07 -0.69 9.60 -39.23 -0.38 -1.07 16 19 C -0.12 -1.32 5.88 -104.91 -0.62 -1.94 16 20 C 0.53 5.61 8.28 34.70 0.29 5.90 16 21 O -0.51 -6.76 17.12 -19.22 -0.33 -7.09 16 22 O -0.51 -3.80 12.67 -40.46 -0.51 -4.31 16 23 C -0.06 -0.72 9.58 -39.23 -0.38 -1.10 16 24 C -0.08 -1.02 9.58 -39.24 -0.38 -1.40 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 27 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.36 7.90 -51.93 -0.41 0.95 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.39 6.45 6.62 -40.82 -0.27 6.18 16 32 H 0.14 1.44 6.39 -52.49 -0.34 1.10 16 33 H 0.14 1.16 7.60 -52.49 -0.40 0.76 16 34 H 0.41 1.19 9.11 45.56 0.42 1.61 16 35 H 0.14 1.46 7.64 -52.48 -0.40 1.06 16 36 H 0.15 1.87 7.64 -52.49 -0.40 1.47 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -32.18 309.05 -6.22 -38.40 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -3.17 Total: 6.63 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.89 Total: -5.28 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.50 Total: -38.06 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.77 Total: -22.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.54 Total: 16.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.18 -6.22 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.056 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds