Wall clock time and date at job start Mon Mar 30 2020 01:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21529 * 120.00412 * 359.97438 * 14 13 3 16 16 C 1.48042 * 120.00094 * 180.02562 * 14 13 3 17 17 C 1.39558 * 119.99192 * 359.72404 * 16 14 13 18 18 C 1.37821 * 120.00293 * 179.72244 * 17 16 14 19 19 C 1.39596 * 119.99352 * 0.55339 * 18 17 16 20 20 C 1.47933 * 120.00381 * 179.70210 * 19 18 17 21 21 O 1.21447 * 119.99694 * 180.02562 * 20 19 18 22 22 O 1.34688 * 119.99790 * 0.02562 * 20 19 18 23 23 C 1.39597 * 119.99047 * 359.71719 * 19 18 17 24 24 C 1.37813 * 119.99794 * 0.02562 * 23 19 18 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 1.07997 * 120.00126 * 0.02562 * 17 16 14 33 33 H 1.07996 * 120.00157 * 180.25091 * 18 17 16 34 34 H 0.96701 * 116.99919 * 180.02562 * 22 20 19 35 35 H 1.08006 * 120.00102 * 179.97438 * 23 19 18 36 36 H 1.07994 * 120.00279 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3365 2.6302 -0.4623 16 6 0.0713 3.3158 -2.6603 17 6 0.9759 3.3532 -3.7222 18 6 0.6218 3.9593 -4.9082 19 6 -0.6377 4.5461 -5.0432 20 6 -1.0156 5.2026 -6.3139 21 8 -2.1112 5.7134 -6.4310 22 8 -0.1447 5.2337 -7.3408 23 6 -1.5403 4.5135 -3.9788 24 6 -1.1878 3.9026 -2.7949 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5270 2.3971 31 1 2.2931 2.1156 -1.9978 32 1 1.9518 2.9028 -3.6164 33 1 1.3204 3.9847 -5.7314 34 1 -0.4365 5.6742 -8.1507 35 1 -2.5147 4.9677 -4.0829 36 1 -1.8858 3.8777 -1.9712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589464109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:56 Heat of formation + Delta-G solvation = -131.842316 kcal Electronic energy + Delta-G solvation = -20819.993890 eV Core-core repulsion = 17460.825342 eV Total energy + Delta-G solvation = -3359.168548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62994 -40.96180 -39.20521 -37.12475 -36.98573 -34.46671 -33.64149 -32.34367 -31.91753 -29.44652 -26.54757 -24.72491 -23.71512 -23.07360 -21.89102 -21.21505 -19.66469 -19.15299 -18.61471 -17.91826 -17.40115 -16.70732 -16.53969 -16.20309 -15.85792 -15.72352 -15.12493 -14.78161 -14.61133 -14.55948 -14.20380 -13.77929 -13.71126 -13.48830 -13.42561 -12.92569 -12.61007 -12.57939 -12.36780 -12.20652 -11.85711 -11.81504 -11.68989 -11.20582 -10.89369 -10.81801 -10.25373 -10.12827 -9.73815 -8.38250 -6.44078 -0.74391 0.25833 1.18921 1.30111 1.35266 1.45207 1.97733 2.02354 2.27573 2.34158 2.79721 3.02648 3.66078 3.71710 3.86061 4.12160 4.19082 4.31939 4.34623 4.42105 4.53948 4.60084 4.82678 4.92827 5.06582 5.11245 5.17968 5.22578 5.24257 5.29684 5.41268 5.53821 5.55727 5.63745 5.72697 6.12762 6.60806 6.83829 6.93565 7.20746 7.37860 8.76471 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.003968 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.011305 B = 7055.213384 C = 7447.274671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.242 3.758 4 H 0.031 0.969 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.036 3.964 8 N -0.929 5.929 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.252 1.252 12 H -0.279 1.279 13 N -0.693 5.693 14 C 0.538 3.462 15 O -0.575 6.575 16 C -0.102 4.102 17 C -0.098 4.098 18 C -0.054 4.054 19 C -0.119 4.119 20 C 0.537 3.463 21 O -0.543 6.543 22 O -0.499 6.499 23 C -0.062 4.062 24 C -0.081 4.081 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.270 0.730 31 H 0.406 0.594 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.436 0.564 35 H 0.151 0.849 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 4.807 -16.039 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C 0.138 3.862 4 H 0.048 0.952 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.165 4.165 8 N -0.567 5.567 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.176 1.176 12 H -0.205 1.205 13 N -0.342 5.342 14 C 0.325 3.675 15 O -0.457 6.457 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.072 4.072 19 C -0.120 4.120 20 C 0.382 3.618 21 O -0.435 6.435 22 O -0.313 6.313 23 C -0.080 4.080 24 C -0.100 4.100 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.242 0.758 32 H 0.171 0.829 33 H 0.189 0.811 34 H 0.299 0.701 35 H 0.169 0.831 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.909 4.705 -14.931 19.081 hybrid contribution 0.037 0.428 0.300 0.524 sum -10.872 5.133 -14.632 18.937 Atomic orbital electron populations 1.21788 0.95901 1.00395 1.01179 1.22012 0.94947 0.97883 1.01485 1.18940 0.93419 0.90314 0.83484 0.95153 1.21206 0.90137 1.51017 0.94199 0.92180 1.25539 0.95673 0.93840 1.01402 1.69968 1.11057 1.50575 1.25127 0.86147 0.80184 0.79206 0.79903 1.20182 1.17576 1.20472 1.46275 1.14982 1.55347 1.17585 1.18759 0.82188 0.78688 0.87817 1.90720 1.51701 1.61105 1.42186 1.20350 0.96377 0.99971 0.93870 1.21598 0.99793 0.98333 0.91901 1.21630 0.94853 0.92890 0.97858 1.19359 0.96901 1.03602 0.92151 1.20791 0.81276 0.75575 0.84108 1.90887 1.24143 1.45200 1.83285 1.84506 1.46689 1.74059 1.26073 1.21290 0.99851 0.96105 0.90742 1.21244 0.95347 0.95451 0.97995 0.92381 0.94712 0.93219 0.91689 0.92969 0.92060 0.75755 0.82860 0.81079 0.70138 0.83113 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.53 71.98 0.61 -4.43 16 2 C -0.12 -5.08 5.54 30.59 0.17 -4.91 16 3 C 0.24 10.90 1.82 44.25 0.08 10.99 16 4 H 0.03 1.52 4.92 -2.39 -0.01 1.50 16 5 C -0.53 -27.44 9.05 25.60 0.23 -27.21 16 6 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 7 C 0.04 1.98 5.47 84.65 0.46 2.44 16 8 N -0.93 -54.17 13.96 21.45 0.30 -53.87 16 9 Si 0.92 43.58 26.69 68.60 1.83 45.41 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.25 -11.56 6.88 99.48 0.68 -10.88 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.69 -25.80 4.98 -448.78 -2.23 -28.03 16 14 C 0.54 19.31 6.38 86.84 0.55 19.87 16 15 O -0.58 -24.33 13.47 -3.81 -0.05 -24.38 16 16 C -0.10 -2.81 5.88 -20.04 -0.12 -2.93 16 17 C -0.10 -2.06 9.53 22.49 0.21 -1.84 16 18 C -0.05 -0.94 9.60 22.50 0.22 -0.72 16 19 C -0.12 -2.31 5.88 -20.05 -0.12 -2.43 16 20 C 0.54 9.81 8.28 70.39 0.58 10.40 16 21 O -0.54 -13.07 17.12 20.01 0.34 -12.73 16 22 O -0.50 -5.53 12.67 -55.97 -0.71 -6.24 16 23 C -0.06 -1.31 9.58 22.50 0.22 -1.09 16 24 C -0.08 -2.03 9.58 22.49 0.22 -1.82 16 25 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.03 1.39 7.88 -2.39 -0.02 1.37 16 27 H 0.05 1.84 5.63 -2.39 -0.01 1.82 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.05 2.22 7.90 -2.38 -0.02 2.20 16 30 H 0.27 14.86 8.31 -92.71 -0.77 14.08 16 31 H 0.41 12.91 6.62 -92.71 -0.61 12.30 16 32 H 0.15 2.75 6.39 -2.91 -0.02 2.74 16 33 H 0.17 2.00 7.60 -2.91 -0.02 1.98 16 34 H 0.44 0.87 9.11 -74.06 -0.67 0.19 16 35 H 0.15 2.89 7.64 -2.91 -0.02 2.86 16 36 H 0.14 3.60 7.64 -2.91 -0.02 3.58 16 Total: -1.00 -69.36 309.05 2.63 -66.73 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -0.17 Total: 16.80 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 3.32 Total: -3.68 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.93 Total: -81.90 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.42 Total: -43.35 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.83 Total: 45.41 kcal Total: -69.36 2.63 -66.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.113 kcal (2) G-P(sol) polarization free energy of solvation -69.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds