Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47342 * 2 1 4 4 N 1.46503 * 109.47351 * 300.00203 * 3 2 1 5 5 C 1.34769 * 120.00513 * 179.97438 * 4 3 2 6 6 O 1.21689 * 119.99890 * 0.02562 * 5 4 3 7 7 C 1.46372 * 120.00271 * 179.97438 * 5 4 3 8 8 H 1.08001 * 120.00171 * 0.02562 * 7 5 4 9 9 C 1.40051 * 120.00165 * 180.02562 * 7 5 4 10 10 N 1.30673 * 119.99937 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99993 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47013 * 120.00296 * 11 9 7 14 14 H 1.48504 * 109.47269 * 240.00227 * 11 9 7 15 15 C 1.50706 * 109.47215 * 240.00180 * 2 1 3 16 16 O 1.20825 * 119.99859 * 359.97438 * 15 2 1 17 17 O 1.34224 * 120.00295 * 180.02562 * 15 2 1 18 18 C 1.50705 * 109.47103 * 120.00083 * 2 1 3 19 19 C 1.38236 * 119.99739 * 239.72274 * 18 2 1 20 20 C 1.38238 * 119.99639 * 179.78605 * 19 18 2 21 21 C 1.38235 * 119.99902 * 0.45082 * 20 19 18 22 22 C 1.38228 * 119.99966 * 359.80478 * 21 20 19 23 23 C 1.38231 * 120.00395 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.46861 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47151 * 299.99682 * 1 2 3 26 26 H 1.08997 * 109.47192 * 59.99735 * 1 2 3 27 27 H 1.09004 * 109.47195 * 59.99790 * 3 2 1 28 28 H 1.08995 * 109.47425 * 179.97438 * 3 2 1 29 29 H 0.97003 * 119.99498 * 0.02562 * 4 3 2 30 30 H 0.96993 * 119.99785 * 179.97438 * 10 9 7 31 31 H 0.96700 * 117.00196 * 179.97438 * 17 15 2 32 32 H 1.07995 * 120.00299 * 0.02562 * 19 18 2 33 33 H 1.08002 * 119.99653 * 180.27422 * 20 19 18 34 34 H 1.08000 * 119.99809 * 179.83254 * 21 20 19 35 35 H 1.08007 * 120.00049 * 180.02562 * 22 21 20 36 36 H 1.08005 * 120.00490 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1332 -1.1962 5 6 1.8768 3.4236 -1.4092 6 8 2.5765 4.0149 -0.6082 7 6 1.3894 4.1134 -2.6046 8 1 0.7688 3.5885 -3.3157 9 6 1.7277 5.4543 -2.8263 10 7 2.4790 6.0893 -1.9661 11 14 1.1050 6.3348 -4.3514 12 1 0.2795 5.4017 -5.1594 13 1 0.2801 7.5016 -3.9472 14 1 2.2600 6.8015 -5.1599 15 6 2.0323 -0.7104 -1.2305 16 8 1.2472 -1.1699 -2.0256 17 8 3.3520 -0.8335 -1.4427 18 6 2.0323 -0.7104 1.2305 19 6 2.8318 -0.0403 2.1375 20 6 3.2889 -0.6907 3.2684 21 6 2.9543 -2.0139 3.4876 22 6 2.1592 -2.6855 2.5779 23 6 1.6983 -2.0338 1.4493 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 0.9936 1.6618 -1.8344 30 1 2.7137 7.0178 -2.1199 31 1 3.6261 -1.2974 -2.2456 32 1 3.0960 0.9925 1.9646 33 1 3.9099 -0.1658 3.9793 34 1 3.3136 -2.5228 4.3698 35 1 1.8974 -3.7192 2.7493 36 1 1.0774 -2.5587 0.7383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592645766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = -109.166815 kcal Electronic energy + Delta-G solvation = -21477.207753 eV Core-core repulsion = 18119.022489 eV Total energy + Delta-G solvation = -3358.185264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86820 -39.05181 -37.41402 -36.08001 -35.25763 -32.66426 -31.89573 -31.02233 -29.34555 -27.12157 -25.72733 -24.27235 -22.52456 -22.13343 -19.92879 -19.56705 -17.86876 -17.59554 -17.05481 -16.27159 -15.60832 -15.24091 -14.89643 -14.70279 -14.25894 -14.03802 -13.95895 -13.41228 -13.20735 -12.90941 -12.73909 -12.39722 -12.13212 -11.87909 -11.64660 -11.39021 -11.36841 -11.17577 -11.04449 -10.87308 -10.65698 -10.46876 -10.28131 -10.19214 -8.96247 -8.86966 -8.80701 -7.65980 -7.59605 -6.20644 -4.65690 1.23676 1.35930 2.32096 3.12071 3.12913 3.21335 3.26114 3.74852 4.08190 4.38127 4.56887 4.69882 4.90559 4.92426 4.96209 5.02635 5.16604 5.39393 5.42801 5.55055 5.74700 5.81133 5.84510 5.93654 6.00201 6.23087 6.26824 6.32073 6.40445 6.46930 6.55096 6.61205 6.92863 7.42644 7.83531 7.99745 8.03270 8.29793 9.01336 9.45672 10.57021 10.75128 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.004565 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.802825 B = 6132.544952 C = 6671.541004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.022 4.022 3 C 0.144 3.856 4 N -0.770 5.770 5 C 0.556 3.444 6 O -0.579 6.579 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.908 3.092 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.499 3.501 16 O -0.515 6.515 17 O -0.504 6.504 18 C -0.068 4.068 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.113 4.113 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.380 0.620 30 H 0.268 0.732 31 H 0.407 0.593 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -15.743 6.871 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 C 0.019 3.981 4 N -0.427 5.427 5 C 0.360 3.640 6 O -0.461 6.461 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.396 5.396 11 Si 0.732 3.268 12 H -0.188 1.188 13 H -0.201 1.201 14 H -0.201 1.201 15 C 0.342 3.658 16 O -0.403 6.403 17 O -0.315 6.315 18 C -0.069 4.069 19 C -0.120 4.120 20 C -0.135 4.135 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.131 4.131 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.212 0.788 30 H 0.079 0.921 31 H 0.265 0.735 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.279 -15.039 7.666 16.883 hybrid contribution -0.362 -0.170 -1.621 1.670 sum -0.640 -15.209 6.045 16.379 Atomic orbital electron populations 1.21771 0.90002 1.02858 1.03851 1.19744 0.97944 0.96162 0.88472 1.21039 0.99062 0.86364 0.91675 1.46281 1.58112 1.14254 1.24032 1.18204 0.80265 0.78406 0.87087 1.90600 1.41490 1.65455 1.48602 1.20910 1.34012 0.96443 1.06735 0.91402 1.25699 0.93341 0.97354 0.96778 1.70026 1.26934 1.09953 1.32667 0.86317 0.79118 0.79549 0.81799 1.18758 1.20125 1.20150 1.23092 0.80083 0.75917 0.86751 1.90693 1.56950 1.46186 1.46489 1.84570 1.26023 1.72850 1.48044 1.19348 0.98553 0.94087 0.94927 1.21339 0.96025 1.01002 0.93641 1.21187 0.99957 0.94829 0.97497 1.21170 0.98502 0.94914 0.99291 1.21050 0.98472 0.99787 0.94560 1.20990 1.00099 0.94018 0.98018 0.91753 0.90729 0.90615 0.91390 0.91599 0.78771 0.92140 0.73516 0.84552 0.85720 0.86155 0.86095 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 7.40 37.16 0.28 -1.53 16 2 C -0.02 -0.33 0.56 -156.81 -0.09 -0.42 16 3 C 0.14 2.72 3.16 -4.04 -0.01 2.71 16 4 N -0.77 -17.29 5.00 -61.72 -0.31 -17.60 16 5 C 0.56 15.78 7.75 -12.99 -0.10 15.68 16 6 O -0.58 -18.51 15.02 5.20 0.08 -18.43 16 7 C -0.54 -15.46 9.54 -35.63 -0.34 -15.80 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 10 N -0.77 -22.93 11.83 55.55 0.66 -22.27 16 11 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 12 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 C 0.50 7.91 5.81 36.01 0.21 8.12 16 16 O -0.51 -8.91 16.74 -18.75 -0.31 -9.22 16 17 O -0.50 -7.16 13.24 -39.24 -0.52 -7.68 16 18 C -0.07 -0.93 4.69 -104.62 -0.49 -1.42 16 19 C -0.10 -1.36 8.98 -39.58 -0.36 -1.72 16 20 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 22 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 23 C -0.11 -1.36 8.82 -39.59 -0.35 -1.71 16 24 H 0.06 0.81 7.35 -51.93 -0.38 0.43 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.15 6.82 -51.93 -0.35 0.80 16 27 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 28 H 0.07 1.33 7.47 -51.93 -0.39 0.94 16 29 H 0.38 7.95 6.86 -40.82 -0.28 7.67 16 30 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 31 H 0.41 3.90 9.10 45.56 0.41 4.31 16 32 H 0.14 1.92 5.89 -52.49 -0.31 1.61 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.12 1.35 7.58 -52.48 -0.40 0.95 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -35.71 312.12 -6.59 -42.30 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.32 Total: 11.69 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.54 Total: 1.31 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.35 Total: -39.86 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.76 Total: -35.34 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.71 -6.59 -42.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592645766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.867 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds