Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47342 * 2 1 4 4 N 1.46503 * 109.47351 * 300.00203 * 3 2 1 5 5 C 1.34769 * 120.00513 * 179.97438 * 4 3 2 6 6 O 1.21689 * 119.99890 * 0.02562 * 5 4 3 7 7 C 1.46372 * 120.00271 * 179.97438 * 5 4 3 8 8 H 1.08001 * 120.00171 * 0.02562 * 7 5 4 9 9 C 1.40051 * 120.00165 * 180.02562 * 7 5 4 10 10 N 1.30673 * 119.99937 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99993 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47013 * 120.00296 * 11 9 7 14 14 H 1.48504 * 109.47269 * 240.00227 * 11 9 7 15 15 C 1.50706 * 109.47215 * 240.00180 * 2 1 3 16 16 O 1.20825 * 119.99859 * 359.97438 * 15 2 1 17 17 O 1.34224 * 120.00295 * 180.02562 * 15 2 1 18 18 C 1.50705 * 109.47103 * 120.00083 * 2 1 3 19 19 C 1.38236 * 119.99739 * 239.72274 * 18 2 1 20 20 C 1.38238 * 119.99639 * 179.78605 * 19 18 2 21 21 C 1.38235 * 119.99902 * 0.45082 * 20 19 18 22 22 C 1.38228 * 119.99966 * 359.80478 * 21 20 19 23 23 C 1.38231 * 120.00395 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.46861 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47151 * 299.99682 * 1 2 3 26 26 H 1.08997 * 109.47192 * 59.99735 * 1 2 3 27 27 H 1.09004 * 109.47195 * 59.99790 * 3 2 1 28 28 H 1.08995 * 109.47425 * 179.97438 * 3 2 1 29 29 H 0.97003 * 119.99498 * 0.02562 * 4 3 2 30 30 H 0.96993 * 119.99785 * 179.97438 * 10 9 7 31 31 H 0.96700 * 117.00196 * 179.97438 * 17 15 2 32 32 H 1.07995 * 120.00299 * 0.02562 * 19 18 2 33 33 H 1.08002 * 119.99653 * 180.27422 * 20 19 18 34 34 H 1.08000 * 119.99809 * 179.83254 * 21 20 19 35 35 H 1.08007 * 120.00049 * 180.02562 * 22 21 20 36 36 H 1.08005 * 120.00490 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1332 -1.1962 5 6 1.8768 3.4236 -1.4092 6 8 2.5765 4.0149 -0.6082 7 6 1.3894 4.1134 -2.6046 8 1 0.7688 3.5885 -3.3157 9 6 1.7277 5.4543 -2.8263 10 7 2.4790 6.0893 -1.9661 11 14 1.1050 6.3348 -4.3514 12 1 0.2795 5.4017 -5.1594 13 1 0.2801 7.5016 -3.9472 14 1 2.2600 6.8015 -5.1599 15 6 2.0323 -0.7104 -1.2305 16 8 1.2472 -1.1699 -2.0256 17 8 3.3520 -0.8335 -1.4427 18 6 2.0323 -0.7104 1.2305 19 6 2.8318 -0.0403 2.1375 20 6 3.2889 -0.6907 3.2684 21 6 2.9543 -2.0139 3.4876 22 6 2.1592 -2.6855 2.5779 23 6 1.6983 -2.0338 1.4493 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 0.9936 1.6618 -1.8344 30 1 2.7137 7.0178 -2.1199 31 1 3.6261 -1.2974 -2.2456 32 1 3.0960 0.9925 1.9646 33 1 3.9099 -0.1658 3.9793 34 1 3.3136 -2.5228 4.3698 35 1 1.8974 -3.7192 2.7493 36 1 1.0774 -2.5587 0.7383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592645766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = -134.668556 kcal Electronic energy + Delta-G solvation = -21478.313592 eV Core-core repulsion = 18119.022489 eV Total energy + Delta-G solvation = -3359.291103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.09416 -40.08983 -39.36103 -37.34095 -36.72766 -34.70970 -33.71541 -31.94471 -30.45044 -28.95226 -27.30822 -25.67314 -23.58415 -23.15687 -21.77380 -20.88773 -19.45511 -19.08463 -18.27927 -17.64323 -17.25432 -16.78232 -16.17278 -15.94906 -15.76728 -15.56151 -15.30319 -14.64093 -14.46270 -14.36954 -14.16267 -13.72654 -13.48420 -13.18096 -13.13318 -12.91071 -12.77992 -12.65518 -12.61212 -12.51600 -12.05718 -11.99110 -11.76930 -11.52295 -10.96108 -9.92550 -9.86226 -9.73107 -9.58613 -8.32077 -6.88820 0.32162 0.46567 1.05039 1.39175 1.39646 1.57453 1.98753 2.23167 2.44278 2.82513 2.90439 3.46123 3.54259 3.57987 3.73100 4.05234 4.12005 4.22697 4.29194 4.55853 4.59199 4.62797 4.68205 4.73471 4.84742 5.00461 5.09299 5.12360 5.29815 5.47805 5.52477 5.59151 5.60558 5.81155 6.05930 6.08018 6.19550 6.84301 6.88421 7.41409 8.43317 8.63644 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.004565 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.802825 B = 6132.544952 C = 6671.541004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.013 4.013 3 C 0.151 3.849 4 N -0.757 5.757 5 C 0.541 3.459 6 O -0.626 6.626 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.031 3.969 10 N -0.818 5.818 11 Si 0.997 3.003 12 H -0.250 1.250 13 H -0.266 1.266 14 H -0.267 1.267 15 C 0.500 3.500 16 O -0.531 6.531 17 O -0.508 6.508 18 C -0.083 4.083 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.119 4.119 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.389 0.611 30 H 0.276 0.724 31 H 0.426 0.574 32 H 0.115 0.885 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -17.424 6.634 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.014 4.014 3 C 0.026 3.974 4 N -0.412 5.412 5 C 0.345 3.655 6 O -0.513 6.513 7 C -0.610 4.610 8 H 0.101 0.899 9 C -0.184 4.184 10 N -0.447 5.447 11 Si 0.817 3.183 12 H -0.173 1.173 13 H -0.191 1.191 14 H -0.192 1.192 15 C 0.343 3.657 16 O -0.421 6.421 17 O -0.321 6.321 18 C -0.084 4.084 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.134 4.134 23 C -0.137 4.137 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.223 0.777 30 H 0.086 0.914 31 H 0.287 0.713 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.999 -16.785 7.422 18.380 hybrid contribution -0.071 0.258 -1.463 1.488 sum -1.070 -16.527 5.959 17.601 Atomic orbital electron populations 1.21777 0.89127 1.03955 1.03433 1.19618 0.98610 0.93490 0.89696 1.21006 0.98008 0.88658 0.89696 1.45934 1.57315 1.12894 1.25104 1.18542 0.79947 0.79961 0.87011 1.90555 1.43561 1.67101 1.50036 1.21421 1.34705 0.97624 1.07257 0.89920 1.26929 0.92908 0.97946 1.00629 1.70173 1.28356 1.10804 1.35397 0.84978 0.78735 0.78084 0.76542 1.17346 1.19082 1.19201 1.23144 0.80370 0.75677 0.86521 1.90682 1.57384 1.47099 1.46889 1.84538 1.25231 1.72950 1.49363 1.19237 0.99809 0.94993 0.94348 1.21299 0.97403 1.00472 0.95144 1.21435 0.99831 0.95702 0.96895 1.21563 0.97408 0.94220 1.00065 1.21435 0.97355 1.01093 0.93467 1.21116 1.00399 0.93190 0.99008 0.89877 0.90087 0.92035 0.92170 0.93301 0.77729 0.91429 0.71282 0.86661 0.84078 0.82949 0.83036 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 7.40 71.98 0.53 -2.98 16 2 C -0.01 -0.39 0.56 -53.67 -0.03 -0.42 16 3 C 0.15 5.98 3.16 86.38 0.27 6.25 16 4 N -0.76 -35.14 5.00 -467.42 -2.34 -37.48 16 5 C 0.54 31.82 7.75 86.36 0.67 32.49 16 6 O -0.63 -41.93 15.02 -4.31 -0.06 -42.00 16 7 C -0.57 -33.10 9.54 24.83 0.24 -32.87 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.03 1.76 5.50 85.31 0.47 2.23 16 10 N -0.82 -50.10 11.83 21.84 0.26 -49.84 16 11 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 12 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 13 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 14 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 15 C 0.50 15.70 5.81 71.24 0.41 16.12 16 16 O -0.53 -17.99 16.74 21.97 0.37 -17.62 16 17 O -0.51 -14.27 13.24 -51.35 -0.68 -14.95 16 18 C -0.08 -2.24 4.69 -19.86 -0.09 -2.33 16 19 C -0.13 -3.39 8.98 22.27 0.20 -3.19 16 20 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 21 C -0.11 -1.96 10.05 22.27 0.22 -1.73 16 22 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 23 C -0.12 -2.63 8.82 22.27 0.20 -2.44 16 24 H 0.08 2.00 7.35 -2.39 -0.02 1.98 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.87 6.82 -2.39 -0.02 1.85 16 27 H 0.06 2.47 7.53 -2.39 -0.02 2.45 16 28 H 0.05 2.10 7.47 -2.39 -0.02 2.08 16 29 H 0.39 16.60 6.86 -92.71 -0.64 15.97 16 30 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 31 H 0.43 7.81 9.10 -74.06 -0.67 7.13 16 32 H 0.12 3.52 5.89 -2.91 -0.02 3.50 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.13 2.57 7.58 -2.91 -0.02 2.55 16 Total: -1.00 -79.12 312.12 2.93 -76.19 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.18 Total: 35.30 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 3.54 Total: 7.02 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -2.08 Total: -87.32 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -0.38 Total: -74.57 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -79.12 2.93 -76.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592645766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.481 kcal (2) G-P(sol) polarization free energy of solvation -79.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds