Wall clock time and date at job start Mon Mar 30 2020 01:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47150 * 2 1 4 4 H 1.08997 * 109.47572 * 304.99773 * 3 2 1 5 5 C 1.50696 * 109.47444 * 65.00048 * 3 2 1 6 6 O 1.20831 * 119.99997 * 119.99786 * 5 3 2 7 7 O 1.34228 * 119.99981 * 300.00649 * 5 3 2 8 8 C 1.50701 * 109.47150 * 185.00309 * 3 2 1 9 9 O 1.21283 * 120.00386 * 359.97438 * 8 3 2 10 10 N 1.34777 * 120.00265 * 179.97438 * 8 3 2 11 11 C 1.39237 * 120.00442 * 185.16821 * 10 8 3 12 12 C 1.39481 * 119.82940 * 33.23921 * 11 10 8 13 13 C 1.36373 * 120.16759 * 179.72531 * 12 11 10 14 14 C 1.40870 * 119.82667 * 0.27037 * 13 12 11 15 15 C 1.41163 * 120.16222 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99528 * 335.00948 * 15 14 13 17 17 C 1.39896 * 119.99730 * 155.00540 * 15 14 13 18 18 N 1.30872 * 120.00699 * 342.35067 * 17 15 14 19 19 Si 1.86804 * 119.99747 * 162.34672 * 17 15 14 20 20 H 1.48500 * 109.46966 * 94.69713 * 19 17 15 21 21 H 1.48509 * 109.47091 * 214.69714 * 19 17 15 22 22 H 1.48500 * 109.47140 * 334.69586 * 19 17 15 23 23 C 1.40866 * 119.67742 * 0.02562 * 14 13 12 24 24 C 1.36379 * 119.82288 * 0.02562 * 23 14 13 25 25 H 1.08999 * 109.47337 * 60.00130 * 1 2 3 26 26 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47067 * 299.99594 * 1 2 3 28 28 H 1.09005 * 109.46733 * 240.00016 * 2 1 3 29 29 H 1.08999 * 109.47337 * 119.99870 * 2 1 3 30 30 H 0.96700 * 117.00165 * 180.02562 * 7 5 3 31 31 H 0.97006 * 119.99430 * 5.17547 * 10 8 3 32 32 H 1.07999 * 119.91444 * 359.97438 * 12 11 10 33 33 H 1.07999 * 120.08835 * 180.29739 * 13 12 11 34 34 H 0.97000 * 120.00315 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.08842 * 180.02562 * 23 14 13 36 36 H 1.07998 * 119.90963 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6413 2.1163 1.2876 6 8 2.4898 2.5531 2.0288 7 8 0.3437 2.2310 1.6113 8 6 3.5418 1.4442 -0.1239 9 8 4.1450 0.3951 -0.2038 10 7 4.2148 2.6118 -0.1459 11 6 5.5893 2.6190 -0.3682 12 6 6.1617 1.6621 -1.2061 13 6 7.5064 1.6662 -1.4330 14 6 8.3185 2.6368 -0.8142 15 6 9.7111 2.6480 -1.0446 16 1 10.2176 1.7395 -1.3352 17 6 10.4350 3.8359 -0.8964 18 7 9.8108 4.9861 -0.8883 19 14 12.2929 3.7803 -0.7100 20 1 12.9294 3.9665 -2.0387 21 1 12.7313 4.8646 0.2052 22 1 12.6949 2.4657 -0.1483 23 6 7.7339 3.5962 0.0357 24 6 6.3878 3.5787 0.2538 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.1370 2.6712 2.4472 31 1 3.7416 3.4470 -0.0068 32 1 5.5379 0.9184 -1.6795 33 1 7.9476 0.9276 -2.0858 34 1 10.3127 5.8097 -0.7852 35 1 8.3501 4.3436 0.5132 36 1 5.9382 4.3138 0.9048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604879235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:53 Heat of formation + Delta-G solvation = -113.798950 kcal Electronic energy + Delta-G solvation = -20950.753403 eV Core-core repulsion = 17592.367274 eV Total energy + Delta-G solvation = -3358.386129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95622 -39.33587 -37.33398 -36.35048 -34.81414 -34.28521 -32.95320 -29.68270 -29.37271 -28.26690 -24.95878 -23.47372 -22.34488 -21.24051 -20.45720 -19.47745 -18.33622 -17.40299 -17.33107 -16.76905 -16.42496 -15.66627 -15.16214 -14.43980 -14.10357 -14.00415 -13.88764 -13.39128 -13.17708 -12.71949 -12.57587 -12.10227 -12.02055 -11.90254 -11.73429 -11.43118 -11.27953 -11.10421 -11.04668 -10.94265 -10.60524 -10.51864 -10.13282 -9.70808 -9.47141 -9.19977 -8.70967 -7.52573 -6.98271 -6.76235 -4.28161 1.96802 2.31574 2.72797 3.06625 3.07659 3.12342 3.14871 3.46657 3.58411 3.93756 4.48396 4.63029 4.74425 4.89167 5.07296 5.25091 5.32927 5.61364 5.72453 5.87092 5.97061 6.22566 6.24402 6.25207 6.41955 6.77572 6.93148 7.04834 7.18906 7.29322 7.60852 7.65066 7.71581 7.87245 8.04627 8.28309 8.28812 8.59060 8.70495 8.89256 9.00238 10.17540 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.043559 B = 0.003635 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.657254 B = 7700.062975 C = 8145.302027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.103 4.103 4 H 0.131 0.869 5 C 0.486 3.514 6 O -0.497 6.497 7 O -0.508 6.508 8 C 0.514 3.486 9 O -0.521 6.521 10 N -0.633 5.633 11 C -0.008 4.008 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.107 3.893 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.793 5.793 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.154 4.154 24 C -0.108 4.108 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.408 0.592 31 H 0.395 0.605 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.280 0.720 35 H 0.121 0.879 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 -2.062 2.062 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.138 4.138 3 C -0.125 4.125 4 H 0.149 0.851 5 C 0.327 3.673 6 O -0.383 6.383 7 O -0.321 6.321 8 C 0.298 3.702 9 O -0.398 6.398 10 N -0.274 5.274 11 C -0.100 4.100 12 C -0.096 4.096 13 C -0.237 4.237 14 C 0.104 3.896 15 C -0.487 4.487 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.418 5.418 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.174 4.174 24 C -0.129 4.129 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.267 0.733 31 H 0.229 0.771 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.506 -2.625 1.837 15.833 hybrid contribution 0.417 0.960 0.702 1.260 sum -15.089 -1.665 2.538 15.391 Atomic orbital electron populations 1.22023 0.94485 1.02128 1.03282 1.21301 0.96097 0.91492 1.04900 1.21432 0.95699 1.00324 0.95038 0.85109 1.23030 0.80255 0.76323 0.87736 1.90844 1.51375 1.44858 1.51214 1.84594 1.27870 1.74162 1.45428 1.19579 0.87454 0.84707 0.78451 1.90715 1.68498 1.31100 1.49464 1.42885 1.07952 1.07815 1.68768 1.17156 0.80908 1.04259 1.07715 1.20237 0.95216 0.97271 0.96860 1.20649 0.92732 1.04277 1.06026 1.17667 0.93116 0.90202 0.88568 1.19566 0.92759 0.95655 1.40728 0.90325 1.25923 1.01227 0.94876 0.92207 1.69841 1.38392 0.98608 1.34985 0.86311 0.82208 0.79292 0.78996 1.19578 1.20044 1.18384 1.20891 0.92803 1.02347 1.01336 1.20240 0.94408 0.98561 0.99653 0.92499 0.92295 0.90619 0.89262 0.90759 0.73308 0.77142 0.87962 0.88640 0.90878 0.86122 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.55 37.15 0.35 -0.95 16 2 C -0.10 -1.09 4.74 -26.74 -0.13 -1.22 16 3 C -0.10 -1.24 2.67 -92.93 -0.25 -1.48 16 4 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.49 5.70 7.45 36.00 0.27 5.97 16 6 O -0.50 -7.80 16.05 -18.75 -0.30 -8.10 16 7 O -0.51 -3.89 10.57 -39.25 -0.41 -4.31 16 8 C 0.51 9.10 6.38 -10.98 -0.07 9.02 16 9 O -0.52 -11.12 13.56 5.56 0.08 -11.05 16 10 N -0.63 -11.89 4.79 -9.74 -0.05 -11.94 16 11 C -0.01 -0.19 6.29 -83.57 -0.53 -0.72 16 12 C -0.08 -1.85 8.58 -39.79 -0.34 -2.20 16 13 C -0.22 -5.59 9.74 -39.26 -0.38 -5.97 16 14 C 0.11 2.92 5.57 -106.80 -0.59 2.32 16 15 C -0.46 -12.29 9.04 -37.85 -0.34 -12.64 16 16 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 17 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 18 N -0.79 -20.43 10.97 55.54 0.61 -19.82 16 19 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.15 -4.06 8.64 -39.26 -0.34 -4.40 16 24 C -0.11 -2.60 9.89 -39.79 -0.39 -3.00 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.60 5.46 -51.93 -0.28 0.32 16 28 H 0.09 1.01 7.96 -51.93 -0.41 0.60 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.41 1.53 9.10 45.56 0.41 1.94 16 31 H 0.40 6.31 8.30 -40.82 -0.34 5.97 16 32 H 0.10 2.41 6.38 -52.49 -0.33 2.07 16 33 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 34 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 35 H 0.12 3.25 6.18 -52.49 -0.32 2.92 16 36 H 0.09 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -32.51 308.77 -6.65 -39.16 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.37 Total: 11.14 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.83 Total: -13.44 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.56 Total: -31.76 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.64 Total: -23.46 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.51 -6.65 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604879235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.635 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds