Wall clock time and date at job start Mon Mar 30 2020 01:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47150 * 2 1 4 4 H 1.08997 * 109.47572 * 304.99773 * 3 2 1 5 5 C 1.50696 * 109.47444 * 65.00048 * 3 2 1 6 6 O 1.20831 * 119.99997 * 119.99786 * 5 3 2 7 7 O 1.34228 * 119.99981 * 300.00649 * 5 3 2 8 8 C 1.50701 * 109.47150 * 185.00309 * 3 2 1 9 9 O 1.21283 * 120.00386 * 359.97438 * 8 3 2 10 10 N 1.34777 * 120.00265 * 179.97438 * 8 3 2 11 11 C 1.39237 * 120.00442 * 185.16821 * 10 8 3 12 12 C 1.39481 * 119.82940 * 33.23921 * 11 10 8 13 13 C 1.36373 * 120.16759 * 179.72531 * 12 11 10 14 14 C 1.40870 * 119.82667 * 0.27037 * 13 12 11 15 15 C 1.41163 * 120.16222 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99528 * 335.00948 * 15 14 13 17 17 C 1.39896 * 119.99730 * 155.00540 * 15 14 13 18 18 N 1.30872 * 120.00699 * 342.35067 * 17 15 14 19 19 Si 1.86804 * 119.99747 * 162.34672 * 17 15 14 20 20 H 1.48500 * 109.46966 * 94.69713 * 19 17 15 21 21 H 1.48509 * 109.47091 * 214.69714 * 19 17 15 22 22 H 1.48500 * 109.47140 * 334.69586 * 19 17 15 23 23 C 1.40866 * 119.67742 * 0.02562 * 14 13 12 24 24 C 1.36379 * 119.82288 * 0.02562 * 23 14 13 25 25 H 1.08999 * 109.47337 * 60.00130 * 1 2 3 26 26 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47067 * 299.99594 * 1 2 3 28 28 H 1.09005 * 109.46733 * 240.00016 * 2 1 3 29 29 H 1.08999 * 109.47337 * 119.99870 * 2 1 3 30 30 H 0.96700 * 117.00165 * 180.02562 * 7 5 3 31 31 H 0.97006 * 119.99430 * 5.17547 * 10 8 3 32 32 H 1.07999 * 119.91444 * 359.97438 * 12 11 10 33 33 H 1.07999 * 120.08835 * 180.29739 * 13 12 11 34 34 H 0.97000 * 120.00315 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.08842 * 180.02562 * 23 14 13 36 36 H 1.07998 * 119.90963 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6413 2.1163 1.2876 6 8 2.4898 2.5531 2.0288 7 8 0.3437 2.2310 1.6113 8 6 3.5418 1.4442 -0.1239 9 8 4.1450 0.3951 -0.2038 10 7 4.2148 2.6118 -0.1459 11 6 5.5893 2.6190 -0.3682 12 6 6.1617 1.6621 -1.2061 13 6 7.5064 1.6662 -1.4330 14 6 8.3185 2.6368 -0.8142 15 6 9.7111 2.6480 -1.0446 16 1 10.2176 1.7395 -1.3352 17 6 10.4350 3.8359 -0.8964 18 7 9.8108 4.9861 -0.8883 19 14 12.2929 3.7803 -0.7100 20 1 12.9294 3.9665 -2.0387 21 1 12.7313 4.8646 0.2052 22 1 12.6949 2.4657 -0.1483 23 6 7.7339 3.5962 0.0357 24 6 6.3878 3.5787 0.2538 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.1370 2.6712 2.4472 31 1 3.7416 3.4470 -0.0068 32 1 5.5379 0.9184 -1.6795 33 1 7.9476 0.9276 -2.0858 34 1 10.3127 5.8097 -0.7852 35 1 8.3501 4.3436 0.5132 36 1 5.9382 4.3138 0.9048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604879235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:52 Heat of formation + Delta-G solvation = -135.509696 kcal Electronic energy + Delta-G solvation = -20951.694851 eV Core-core repulsion = 17592.367274 eV Total energy + Delta-G solvation = -3359.327578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07749 -40.70411 -39.12082 -37.22162 -36.32592 -35.50772 -34.75357 -31.53861 -31.07060 -29.53313 -26.76224 -24.38544 -23.80523 -22.96832 -22.04385 -20.87342 -19.33280 -19.19887 -18.52529 -18.08606 -17.89500 -17.05127 -16.64541 -15.93051 -15.64803 -15.44124 -14.98012 -14.77859 -14.50461 -14.28224 -14.01919 -13.72685 -13.57306 -13.35469 -12.83432 -12.75625 -12.74212 -12.66853 -12.38322 -12.07413 -11.91197 -11.85357 -11.56852 -11.52550 -11.24091 -10.91639 -10.52134 -9.50630 -8.89038 -8.64840 -6.28280 0.72902 1.05350 1.11314 1.31011 1.39431 1.51837 1.56830 2.13394 2.21316 2.28296 2.73523 3.39913 3.69991 3.75515 3.98660 4.22634 4.35576 4.44972 4.48535 4.54901 4.88975 4.89701 5.07607 5.12063 5.17210 5.24573 5.29044 5.40177 5.51773 5.57860 5.63352 5.84760 5.99225 6.06824 6.33257 6.59958 6.65433 6.90857 6.91041 6.95808 7.26111 8.31437 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.043559 B = 0.003635 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.657254 B = 7700.062975 C = 8145.302027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.098 4.098 3 C -0.094 4.094 4 H 0.171 0.829 5 C 0.499 3.501 6 O -0.542 6.542 7 O -0.487 6.487 8 C 0.511 3.489 9 O -0.561 6.561 10 N -0.632 5.632 11 C 0.003 3.997 12 C -0.084 4.084 13 C -0.233 4.233 14 C 0.077 3.923 15 C -0.496 4.496 16 H 0.075 0.925 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.261 1.261 23 C -0.172 4.172 24 C -0.112 4.112 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.430 0.570 31 H 0.411 0.589 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.290 0.710 35 H 0.109 0.891 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 -1.634 2.272 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.116 4.116 4 H 0.188 0.812 5 C 0.342 3.658 6 O -0.432 6.432 7 O -0.301 6.301 8 C 0.298 3.702 9 O -0.440 6.440 10 N -0.275 5.275 11 C -0.090 4.090 12 C -0.104 4.104 13 C -0.253 4.253 14 C 0.074 3.926 15 C -0.525 4.525 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.447 5.447 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.188 1.188 22 H -0.185 1.185 23 C -0.192 4.192 24 C -0.132 4.132 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.293 0.707 31 H 0.247 0.753 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.479 -2.182 2.055 17.734 hybrid contribution 0.785 0.792 0.655 1.293 sum -16.694 -1.390 2.710 16.969 Atomic orbital electron populations 1.21975 0.91753 1.03108 1.04227 1.21315 0.98259 0.90280 1.03751 1.21384 0.91152 1.01928 0.97105 0.81159 1.22759 0.80966 0.75218 0.86860 1.90849 1.52845 1.47023 1.52482 1.84524 1.25053 1.73735 1.46791 1.20540 0.89869 0.83440 0.76363 1.90698 1.70170 1.32402 1.50707 1.42875 1.06267 1.09337 1.69035 1.17242 0.83136 1.02782 1.05870 1.20375 0.94853 0.97870 0.97321 1.20815 0.93509 1.04510 1.06499 1.17984 0.93920 0.91144 0.89506 1.19796 0.93236 0.96522 1.42971 0.90657 1.26762 1.06101 0.93921 0.91110 1.69873 1.40508 0.99352 1.34924 0.85177 0.75732 0.79317 0.79380 1.18550 1.18803 1.18522 1.20880 0.93844 1.02506 1.01998 1.20462 0.93793 0.99232 0.99743 0.90922 0.91430 0.90186 0.89917 0.92637 0.70750 0.75290 0.87325 0.88348 0.89923 0.87277 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.55 71.98 0.69 -1.24 16 2 C -0.10 -1.93 4.74 30.59 0.14 -1.78 16 3 C -0.09 -2.02 2.67 -12.29 -0.03 -2.05 16 4 H 0.17 2.35 8.14 -2.39 -0.02 2.34 16 5 C 0.50 10.34 7.45 71.23 0.53 10.87 16 6 O -0.54 -16.10 16.05 21.95 0.35 -15.75 16 7 O -0.49 -5.53 10.57 -51.40 -0.54 -6.07 16 8 C 0.51 17.52 6.38 87.66 0.56 18.08 16 9 O -0.56 -23.93 13.56 -3.04 -0.04 -23.98 16 10 N -0.63 -23.08 4.79 -303.11 -1.45 -24.53 16 11 C 0.00 0.14 6.29 38.56 0.24 0.38 16 12 C -0.08 -4.19 8.58 22.13 0.19 -4.00 16 13 C -0.23 -12.47 9.74 22.48 0.22 -12.25 16 14 C 0.08 4.36 5.57 -21.27 -0.12 4.24 16 15 C -0.50 -27.61 9.04 23.39 0.21 -27.40 16 16 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 17 C 0.04 1.86 5.13 85.24 0.44 2.30 16 18 N -0.82 -42.99 10.97 21.82 0.24 -42.76 16 19 Si 0.98 38.64 29.59 68.60 2.03 40.67 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.17 -9.36 8.64 22.48 0.19 -9.17 16 24 C -0.11 -5.43 9.89 22.14 0.22 -5.21 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.95 5.46 -2.39 -0.01 0.93 16 28 H 0.08 1.75 7.96 -2.38 -0.02 1.73 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.43 1.50 9.10 -74.06 -0.67 0.83 16 31 H 0.41 12.39 8.30 -92.70 -0.77 11.62 16 32 H 0.11 5.19 6.38 -2.91 -0.02 5.17 16 33 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 34 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 35 H 0.11 6.08 6.18 -2.91 -0.02 6.07 16 36 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -72.95 308.77 3.76 -69.19 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.31 Total: 30.45 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.48 Total: -27.23 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -1.21 Total: -67.28 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.23 Total: -45.79 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -72.95 3.76 -69.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604879235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.320 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds