Wall clock time and date at job start Mon Mar 30 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 H 1.08996 * 109.47496 * 303.06311 * 3 2 1 5 5 C 1.50706 * 109.47199 * 183.06223 * 3 2 1 6 6 O 1.20822 * 120.00372 * 240.00062 * 5 3 2 7 7 O 1.34234 * 119.99805 * 60.00291 * 5 3 2 8 8 C 1.50700 * 109.46874 * 63.06602 * 3 2 1 9 9 O 1.21284 * 119.99943 * 99.68092 * 8 3 2 10 10 N 1.34776 * 120.00069 * 279.67171 * 8 3 2 11 11 C 1.39232 * 120.00120 * 186.19884 * 10 8 3 12 12 C 1.39482 * 119.83634 * 325.53410 * 11 10 8 13 13 C 1.36376 * 120.17146 * 179.71870 * 12 11 10 14 14 C 1.40869 * 119.82505 * 0.56727 * 13 12 11 15 15 C 1.41153 * 120.16465 * 179.67969 * 14 13 12 16 16 H 1.07994 * 120.00470 * 206.54661 * 15 14 13 17 17 C 1.39907 * 119.99951 * 26.54610 * 15 14 13 18 18 N 1.30877 * 120.00070 * 13.87859 * 17 15 14 19 19 Si 1.86794 * 120.00293 * 193.88474 * 17 15 14 20 20 H 1.48501 * 109.47341 * 59.99444 * 19 17 15 21 21 H 1.48493 * 109.47595 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.46902 * 299.99983 * 19 17 15 23 23 C 1.40867 * 119.67320 * 359.70534 * 14 13 12 24 24 C 1.36374 * 119.82897 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47518 * 67.64270 * 1 2 3 26 26 H 1.09007 * 109.47473 * 187.64296 * 1 2 3 27 27 H 1.08998 * 109.47379 * 307.64141 * 1 2 3 28 28 H 1.09001 * 109.46741 * 240.00024 * 2 1 3 29 29 H 1.08997 * 109.47452 * 120.00721 * 2 1 3 30 30 H 0.96700 * 116.99766 * 179.97438 * 7 5 3 31 31 H 0.96994 * 119.99653 * 5.93051 * 10 8 3 32 32 H 1.08001 * 119.91463 * 359.97438 * 12 11 10 33 33 H 1.08003 * 120.08823 * 180.25578 * 13 12 11 34 34 H 0.97000 * 120.00217 * 180.02562 * 18 17 15 35 35 H 1.08010 * 120.08572 * 179.97438 * 23 14 13 36 36 H 1.08002 * 119.91558 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6325 1.9719 -0.8612 5 6 3.5451 1.4431 -0.0759 6 8 4.1944 1.9503 0.8078 7 8 4.1644 0.8803 -1.1254 8 6 1.6006 2.1305 1.2667 9 8 2.3747 2.2478 2.1929 10 7 0.3475 2.6157 1.3702 11 6 -0.0197 3.3633 2.4860 12 6 0.5210 3.0574 3.7348 13 6 0.1706 3.7888 4.8312 14 6 -0.7491 4.8480 4.7021 15 6 -1.1220 5.6054 5.8334 16 1 -2.0831 6.0972 5.8612 17 6 -0.2465 5.7190 6.9188 18 7 1.0064 5.3637 6.7889 19 14 -0.8658 6.3775 8.5534 20 1 -1.9533 5.5022 9.0597 21 1 0.2498 6.3989 9.5332 22 1 -1.3864 7.7558 8.3666 23 6 -1.2953 5.1473 3.4386 24 6 -0.9302 4.4111 2.3502 25 1 -0.3634 0.3909 -0.9503 26 1 -0.3634 -1.0186 0.1367 27 1 -0.3634 0.6276 0.8137 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.1311 0.9056 -1.1300 31 1 -0.2975 2.4473 0.6656 32 1 1.2222 2.2418 3.8331 33 1 0.5932 3.5534 5.7968 34 1 1.6133 5.4421 7.5415 35 1 -2.0013 5.9577 3.3321 36 1 -1.3484 4.6391 1.3809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604879236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:55 Heat of formation + Delta-G solvation = -105.565687 kcal Electronic energy + Delta-G solvation = -21121.972634 eV Core-core repulsion = 17763.943526 eV Total energy + Delta-G solvation = -3358.029108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79082 -39.28276 -37.27848 -36.01382 -34.92057 -34.37460 -32.79302 -29.53001 -29.16155 -28.65422 -25.15119 -22.79658 -22.62627 -21.35845 -20.61887 -19.39534 -18.08032 -17.33044 -17.11550 -16.79730 -15.85689 -15.58883 -15.19768 -14.74235 -14.24997 -13.93748 -13.69043 -13.32399 -12.94829 -12.79049 -12.61423 -12.13359 -12.06953 -11.83990 -11.58928 -11.46149 -11.32709 -11.17588 -11.07971 -10.94148 -10.49523 -10.36488 -9.92519 -9.80846 -9.42700 -9.01614 -8.62115 -7.50046 -6.97715 -6.68518 -4.28416 2.23029 2.56963 2.70948 3.02762 3.09166 3.11817 3.13398 3.39052 3.71701 3.96008 4.57799 4.67651 4.72539 4.74947 5.10953 5.14678 5.41278 5.49428 5.72054 5.76570 5.84627 6.05819 6.14936 6.42395 6.46474 6.80765 6.99536 7.06771 7.17954 7.30770 7.62572 7.67971 7.90645 7.98835 8.08012 8.21328 8.32751 8.66059 8.76030 8.91205 9.02348 10.24136 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.004053 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.446752 B = 6907.203521 C = 7422.011482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.108 4.108 3 C -0.100 4.100 4 H 0.125 0.875 5 C 0.479 3.521 6 O -0.466 6.466 7 O -0.521 6.521 8 C 0.501 3.499 9 O -0.487 6.487 10 N -0.648 5.648 11 C -0.008 4.008 12 C -0.088 4.088 13 C -0.154 4.154 14 C 0.106 3.894 15 C -0.460 4.460 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.792 5.792 19 Si 0.911 3.089 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.214 4.214 24 C -0.105 4.105 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.410 0.590 31 H 0.395 0.605 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.282 0.718 35 H 0.095 0.905 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -9.175 -13.553 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.146 4.146 3 C -0.123 4.123 4 H 0.143 0.857 5 C 0.317 3.683 6 O -0.349 6.349 7 O -0.334 6.334 8 C 0.285 3.715 9 O -0.360 6.360 10 N -0.294 5.294 11 C -0.100 4.100 12 C -0.108 4.108 13 C -0.174 4.174 14 C 0.103 3.897 15 C -0.490 4.490 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.234 4.234 24 C -0.125 4.125 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.269 0.731 31 H 0.230 0.770 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.651 -8.937 -12.476 15.361 hybrid contribution 0.204 0.398 0.232 0.504 sum 0.855 -8.540 -12.244 14.952 Atomic orbital electron populations 1.22055 0.94265 1.03392 1.02921 1.21427 0.97265 0.91839 1.04076 1.21095 0.89788 1.00856 1.00567 0.85730 1.22635 0.90997 0.75476 0.79168 1.90893 1.66730 1.39946 1.37348 1.84471 1.27837 1.74648 1.46492 1.19684 0.82626 0.80759 0.88442 1.90831 1.52048 1.54681 1.38414 1.43049 1.11083 1.52850 1.22402 1.17192 1.07480 0.99340 0.85955 1.20628 0.99033 0.99943 0.91189 1.21063 1.02190 0.96301 0.97858 1.17681 0.90106 0.90258 0.91638 1.19520 1.02547 1.27533 0.99369 0.90478 1.25937 0.94191 0.93915 1.00469 1.69838 1.03607 1.35922 1.32341 0.86335 0.79310 0.80061 0.80786 1.18856 1.20342 1.19057 1.20557 1.07623 1.02626 0.92638 1.20037 0.99867 0.95226 0.97406 0.91933 0.91521 0.91081 0.89561 0.90708 0.73149 0.77035 0.87329 0.86050 0.90737 0.88638 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.37 37.16 0.35 -1.10 16 2 C -0.11 -1.06 5.36 -26.74 -0.14 -1.20 16 3 C -0.10 -1.25 2.67 -92.92 -0.25 -1.50 16 4 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.48 6.68 7.59 36.01 0.27 6.95 16 6 O -0.47 -8.94 15.17 -26.70 -0.40 -9.35 16 7 O -0.52 -4.99 13.27 -39.27 -0.52 -5.51 16 8 C 0.50 8.98 6.34 -10.99 -0.07 8.91 16 9 O -0.49 -11.42 11.84 -18.48 -0.22 -11.64 16 10 N -0.65 -11.16 4.25 -9.74 -0.04 -11.20 16 11 C -0.01 -0.17 6.33 -83.57 -0.53 -0.70 16 12 C -0.09 -2.23 8.63 -39.79 -0.34 -2.57 16 13 C -0.15 -4.20 8.62 -39.26 -0.34 -4.54 16 14 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 15 C -0.46 -12.33 9.05 -37.85 -0.34 -12.67 16 16 H 0.08 1.95 7.88 -52.49 -0.41 1.54 16 17 C 0.07 1.87 5.20 -17.33 -0.09 1.77 16 18 N -0.79 -21.33 10.85 55.55 0.60 -20.73 16 19 Si 0.91 18.99 29.58 -169.99 -5.03 13.96 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 24 C -0.11 -2.30 9.89 -39.79 -0.39 -2.69 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.75 5.24 -51.93 -0.27 0.48 16 28 H 0.09 0.67 8.04 -51.93 -0.42 0.25 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.41 2.30 9.10 45.56 0.41 2.71 16 31 H 0.39 5.10 7.18 -40.82 -0.29 4.81 16 32 H 0.11 2.79 6.10 -52.49 -0.32 2.47 16 33 H 0.12 3.44 6.15 -52.48 -0.32 3.12 16 34 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 35 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -34.53 307.32 -7.13 -41.66 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.30 Total: 10.81 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.85 Total: -12.64 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.56 Total: -31.93 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -1.14 Total: -26.49 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.53 -7.13 -41.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604879236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.902 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds