Wall clock time and date at job start Mon Mar 30 2020 01:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 H 1.08996 * 109.47496 * 303.06311 * 3 2 1 5 5 C 1.50706 * 109.47199 * 183.06223 * 3 2 1 6 6 O 1.20822 * 120.00372 * 240.00062 * 5 3 2 7 7 O 1.34234 * 119.99805 * 60.00291 * 5 3 2 8 8 C 1.50700 * 109.46874 * 63.06602 * 3 2 1 9 9 O 1.21284 * 119.99943 * 99.68092 * 8 3 2 10 10 N 1.34776 * 120.00069 * 279.67171 * 8 3 2 11 11 C 1.39232 * 120.00120 * 186.19884 * 10 8 3 12 12 C 1.39482 * 119.83634 * 325.53410 * 11 10 8 13 13 C 1.36376 * 120.17146 * 179.71870 * 12 11 10 14 14 C 1.40869 * 119.82505 * 0.56727 * 13 12 11 15 15 C 1.41153 * 120.16465 * 179.67969 * 14 13 12 16 16 H 1.07994 * 120.00470 * 206.54661 * 15 14 13 17 17 C 1.39907 * 119.99951 * 26.54610 * 15 14 13 18 18 N 1.30877 * 120.00070 * 13.87859 * 17 15 14 19 19 Si 1.86794 * 120.00293 * 193.88474 * 17 15 14 20 20 H 1.48501 * 109.47341 * 59.99444 * 19 17 15 21 21 H 1.48493 * 109.47595 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.46902 * 299.99983 * 19 17 15 23 23 C 1.40867 * 119.67320 * 359.70534 * 14 13 12 24 24 C 1.36374 * 119.82897 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47518 * 67.64270 * 1 2 3 26 26 H 1.09007 * 109.47473 * 187.64296 * 1 2 3 27 27 H 1.08998 * 109.47379 * 307.64141 * 1 2 3 28 28 H 1.09001 * 109.46741 * 240.00024 * 2 1 3 29 29 H 1.08997 * 109.47452 * 120.00721 * 2 1 3 30 30 H 0.96700 * 116.99766 * 179.97438 * 7 5 3 31 31 H 0.96994 * 119.99653 * 5.93051 * 10 8 3 32 32 H 1.08001 * 119.91463 * 359.97438 * 12 11 10 33 33 H 1.08003 * 120.08823 * 180.25578 * 13 12 11 34 34 H 0.97000 * 120.00217 * 180.02562 * 18 17 15 35 35 H 1.08010 * 120.08572 * 179.97438 * 23 14 13 36 36 H 1.08002 * 119.91558 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6325 1.9719 -0.8612 5 6 3.5451 1.4431 -0.0759 6 8 4.1944 1.9503 0.8078 7 8 4.1644 0.8803 -1.1254 8 6 1.6006 2.1305 1.2667 9 8 2.3747 2.2478 2.1929 10 7 0.3475 2.6157 1.3702 11 6 -0.0197 3.3633 2.4860 12 6 0.5210 3.0574 3.7348 13 6 0.1706 3.7888 4.8312 14 6 -0.7491 4.8480 4.7021 15 6 -1.1220 5.6054 5.8334 16 1 -2.0831 6.0972 5.8612 17 6 -0.2465 5.7190 6.9188 18 7 1.0064 5.3637 6.7889 19 14 -0.8658 6.3775 8.5534 20 1 -1.9533 5.5022 9.0597 21 1 0.2498 6.3989 9.5332 22 1 -1.3864 7.7558 8.3666 23 6 -1.2953 5.1473 3.4386 24 6 -0.9302 4.4111 2.3502 25 1 -0.3634 0.3909 -0.9503 26 1 -0.3634 -1.0186 0.1367 27 1 -0.3634 0.6276 0.8137 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.1311 0.9056 -1.1300 31 1 -0.2975 2.4473 0.6656 32 1 1.2222 2.2418 3.8331 33 1 0.5932 3.5534 5.7968 34 1 1.6133 5.4421 7.5415 35 1 -2.0013 5.9577 3.3321 36 1 -1.3484 4.6391 1.3809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604879236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:54 Heat of formation + Delta-G solvation = -129.229227 kcal Electronic energy + Delta-G solvation = -21122.998762 eV Core-core repulsion = 17763.943526 eV Total energy + Delta-G solvation = -3359.055236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03935 -40.66368 -39.03091 -37.08755 -36.21139 -35.90510 -34.51785 -31.43319 -30.85104 -29.77152 -26.96514 -24.12758 -23.56058 -23.18635 -22.22248 -20.87547 -19.25334 -19.13773 -18.57257 -17.94644 -17.27132 -16.99090 -16.72277 -16.06676 -15.74643 -15.50346 -14.92203 -14.67893 -14.45634 -14.23664 -13.95356 -13.75251 -13.55756 -13.34709 -12.96568 -12.79596 -12.71480 -12.56814 -12.32011 -12.26083 -11.97000 -11.74013 -11.61111 -11.45462 -11.22895 -10.73444 -10.35416 -9.44639 -8.85044 -8.58859 -6.28595 0.81368 1.14573 1.17590 1.37275 1.43604 1.50875 1.57728 1.90788 2.21043 2.47351 2.77649 3.50591 3.73286 3.74612 3.90326 4.30566 4.40146 4.44809 4.49761 4.56856 4.78580 4.98844 5.08932 5.10607 5.16211 5.19312 5.30531 5.40849 5.42989 5.60828 5.69688 5.86487 6.08881 6.10945 6.34541 6.68250 6.70146 6.92960 6.98322 7.02028 7.40541 8.35672 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.004053 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.446752 B = 6907.203521 C = 7422.011482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.090 4.090 4 H 0.172 0.828 5 C 0.485 3.515 6 O -0.530 6.530 7 O -0.499 6.499 8 C 0.496 3.504 9 O -0.549 6.549 10 N -0.634 5.634 11 C 0.008 3.992 12 C -0.105 4.105 13 C -0.181 4.181 14 C 0.072 3.928 15 C -0.495 4.495 16 H 0.084 0.916 17 C 0.027 3.973 18 N -0.836 5.836 19 Si 0.987 3.013 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.221 4.221 24 C -0.098 4.098 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.429 0.571 31 H 0.421 0.579 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.285 0.715 35 H 0.113 0.887 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 -9.592 -16.646 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.140 4.140 3 C -0.112 4.112 4 H 0.189 0.811 5 C 0.326 3.674 6 O -0.418 6.418 7 O -0.313 6.313 8 C 0.283 3.717 9 O -0.425 6.425 10 N -0.282 5.282 11 C -0.086 4.086 12 C -0.125 4.125 13 C -0.201 4.201 14 C 0.070 3.930 15 C -0.525 4.525 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.462 5.462 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.179 1.179 23 C -0.240 4.240 24 C -0.118 4.118 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.291 0.709 31 H 0.261 0.739 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.848 -9.394 -15.666 18.286 hybrid contribution 0.727 0.390 0.954 1.261 sum -0.121 -9.005 -14.711 17.249 Atomic orbital electron populations 1.22065 0.92988 1.03813 1.03599 1.21490 0.98253 0.89647 1.04570 1.21142 0.89135 1.02380 0.98522 0.81123 1.22917 0.91602 0.74110 0.78758 1.90896 1.68092 1.42987 1.39825 1.84414 1.29639 1.73135 1.44118 1.20689 0.81851 0.79554 0.89615 1.90826 1.53708 1.56791 1.41159 1.42930 1.11907 1.51852 1.21501 1.17273 1.05830 0.99149 0.86302 1.20647 0.99469 0.99795 0.92570 1.20945 1.03777 0.97892 0.97510 1.18023 0.90982 0.90637 0.93378 1.19833 1.03266 1.28760 1.00641 0.89833 1.26891 0.93919 0.93735 1.04101 1.69947 1.05044 1.37657 1.33588 0.85176 0.78749 0.79671 0.75628 1.18162 1.19774 1.17913 1.20864 1.07526 1.03333 0.92322 1.20433 0.98740 0.93771 0.98853 0.88776 0.90532 0.93534 0.86263 0.92999 0.70874 0.73939 0.88810 0.88735 0.90456 0.86924 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.37 71.98 0.67 -1.51 16 2 C -0.10 -1.63 5.36 30.59 0.16 -1.47 16 3 C -0.09 -1.96 2.67 -12.29 -0.03 -2.00 16 4 H 0.17 2.19 8.14 -2.39 -0.02 2.17 16 5 C 0.48 12.66 7.59 71.24 0.54 13.20 16 6 O -0.53 -20.63 15.17 29.58 0.45 -20.18 16 7 O -0.50 -7.87 13.27 -51.45 -0.68 -8.56 16 8 C 0.50 17.34 6.34 87.66 0.56 17.90 16 9 O -0.55 -26.63 11.84 19.94 0.24 -26.39 16 10 N -0.63 -20.54 4.25 -303.11 -1.29 -21.83 16 11 C 0.01 0.35 6.33 38.57 0.24 0.59 16 12 C -0.10 -5.55 8.63 22.13 0.19 -5.36 16 13 C -0.18 -10.48 8.62 22.48 0.19 -10.29 16 14 C 0.07 4.05 5.57 -21.28 -0.12 3.93 16 15 C -0.50 -27.46 9.05 23.39 0.21 -27.25 16 16 H 0.08 4.33 7.88 -2.91 -0.02 4.31 16 17 C 0.03 1.43 5.20 85.24 0.44 1.88 16 18 N -0.84 -47.57 10.85 21.82 0.24 -47.34 16 19 Si 0.99 39.89 29.58 68.60 2.03 41.92 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 C -0.22 -10.61 9.74 22.48 0.22 -10.39 16 24 C -0.10 -4.07 9.89 22.13 0.22 -3.85 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.05 0.85 5.24 -2.39 -0.01 0.83 16 28 H 0.12 1.22 8.04 -2.39 -0.02 1.20 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.43 3.60 9.10 -74.06 -0.67 2.93 16 31 H 0.42 9.21 7.18 -92.71 -0.67 8.55 16 32 H 0.09 5.17 6.10 -2.91 -0.02 5.16 16 33 H 0.09 5.85 6.15 -2.91 -0.02 5.83 16 34 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 35 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -82.67 307.32 4.28 -78.38 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.20 Total: 28.62 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 3.51 Total: -24.62 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.05 Total: -69.17 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: 0.00 Total: -55.13 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -82.67 4.28 -78.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604879236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.845 kcal (2) G-P(sol) polarization free energy of solvation -82.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds