Wall clock time and date at job start Mon Mar 30 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 H 1.09001 * 109.46996 * 55.00358 * 3 2 1 5 5 C 1.50695 * 109.47078 * 295.00255 * 3 2 1 6 6 O 1.20821 * 120.00179 * 359.97438 * 5 3 2 7 7 O 1.34230 * 119.99936 * 180.02562 * 5 3 2 8 8 C 1.50697 * 109.46926 * 174.99802 * 3 2 1 9 9 O 1.21285 * 120.00465 * 0.02562 * 8 3 2 10 10 N 1.34782 * 119.99924 * 179.97438 * 8 3 2 11 11 C 1.39936 * 120.00189 * 174.91198 * 10 8 3 12 12 C 1.39292 * 119.94495 * 325.54157 * 11 10 8 13 13 C 1.38493 * 120.42879 * 179.76338 * 12 11 10 14 14 C 1.37680 * 120.31789 * 0.51388 * 13 12 11 15 15 C 1.40746 * 119.88732 * 359.74220 * 14 13 12 16 16 C 1.41408 * 120.20857 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00122 * 25.13090 * 16 15 14 18 18 C 1.39936 * 119.99416 * 205.13125 * 16 15 14 19 19 N 1.30824 * 120.00486 * 16.78876 * 18 16 15 20 20 Si 1.86808 * 119.99604 * 196.78766 * 18 16 15 21 21 H 1.48501 * 109.46856 * 90.00225 * 20 18 16 22 22 H 1.48500 * 109.46671 * 210.00099 * 20 18 16 23 23 H 1.48499 * 109.46898 * 330.00020 * 20 18 16 24 24 C 1.38240 * 119.94770 * 145.81499 * 11 10 8 25 25 H 1.08998 * 109.47418 * 300.00100 * 1 2 3 26 26 H 1.08997 * 109.47480 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47298 * 59.99619 * 1 2 3 28 28 H 1.09001 * 109.47298 * 120.00381 * 2 1 3 29 29 H 1.08998 * 109.46894 * 239.99931 * 2 1 3 30 30 H 0.96698 * 117.00446 * 179.97438 * 7 5 3 31 31 H 0.97001 * 119.99908 * 354.91503 * 10 8 3 32 32 H 1.08002 * 119.78936 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.84154 * 180.23286 * 13 12 11 34 34 H 1.08001 * 120.06083 * 179.76648 * 14 13 12 35 35 H 0.96998 * 120.00200 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.15889 * 359.95906 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6413 2.1162 -1.2876 6 8 1.0140 1.5053 -2.1201 7 8 1.9840 3.3948 -1.5101 8 6 3.5419 1.4441 0.1239 9 8 4.1450 0.3949 0.2038 10 7 4.2150 2.6116 0.1448 11 6 5.5967 2.6188 0.3665 12 6 6.1685 1.6802 1.2223 13 6 7.5354 1.6750 1.4451 14 6 8.3432 2.6054 0.8307 15 6 7.7789 3.5632 -0.0325 16 6 8.6023 4.5215 -0.6675 17 1 9.6471 4.3079 -0.8376 18 6 8.0632 5.7467 -1.0755 19 7 6.9145 6.1485 -0.5951 20 14 8.9837 6.8086 -2.3063 21 1 8.5630 6.4474 -3.6839 22 1 8.6755 8.2392 -2.0536 23 1 10.4441 6.5834 -2.1595 24 6 6.3912 3.5609 -0.2597 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.7063 3.7839 -2.3507 31 1 3.7417 3.4469 0.0063 32 1 5.5424 0.9489 1.7119 33 1 7.9691 0.9406 2.1075 34 1 9.4081 2.5999 1.0103 35 1 6.5407 6.9975 -0.8783 36 1 5.9483 4.2915 -0.9204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609889963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:59 Heat of formation + Delta-G solvation = -118.338829 kcal Electronic energy + Delta-G solvation = -21248.517561 eV Core-core repulsion = 17889.934568 eV Total energy + Delta-G solvation = -3358.582993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93548 -39.40546 -37.34359 -36.46597 -34.44912 -34.17486 -33.30587 -29.75959 -29.42509 -27.74135 -25.27098 -23.45380 -22.35983 -21.22639 -20.40142 -19.62465 -18.45161 -17.46503 -17.29464 -17.12830 -15.75340 -15.43136 -14.91590 -14.73382 -14.36361 -14.17867 -13.88014 -13.34658 -13.07723 -12.87281 -12.56654 -12.37637 -11.87400 -11.85228 -11.65910 -11.34691 -11.27605 -11.16395 -11.12223 -10.76303 -10.69040 -10.47877 -10.08372 -9.76795 -9.53171 -9.24196 -9.00071 -7.41310 -7.05916 -6.72544 -4.39778 1.90122 2.35317 2.77305 2.89132 3.05562 3.09163 3.18630 3.36492 3.51681 3.91438 4.35824 4.60761 4.77887 4.99264 5.13706 5.32093 5.40089 5.62407 5.65706 5.92645 6.09161 6.15331 6.24209 6.42183 6.59004 6.64982 6.85462 7.01203 7.03553 7.22640 7.55988 7.63725 7.69832 7.88909 7.99946 8.08129 8.28809 8.49041 8.66942 8.86237 8.92308 10.16552 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021480 B = 0.004969 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.241961 B = 5633.896842 C = 6703.780301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.093 4.093 3 C -0.103 4.103 4 H 0.135 0.865 5 C 0.490 3.510 6 O -0.501 6.501 7 O -0.512 6.512 8 C 0.512 3.488 9 O -0.511 6.511 10 N -0.654 5.654 11 C 0.142 3.858 12 C -0.228 4.228 13 C -0.086 4.086 14 C -0.227 4.227 15 C 0.120 3.880 16 C -0.463 4.463 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.179 4.179 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.416 0.584 31 H 0.409 0.591 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.279 0.721 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 -2.329 0.114 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.131 4.131 3 C -0.125 4.125 4 H 0.153 0.847 5 C 0.331 3.669 6 O -0.388 6.388 7 O -0.324 6.324 8 C 0.296 3.704 9 O -0.386 6.386 10 N -0.298 5.298 11 C 0.050 3.950 12 C -0.249 4.249 13 C -0.104 4.104 14 C -0.247 4.247 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.097 0.903 18 C -0.140 4.140 19 N -0.424 5.424 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.200 4.200 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.276 0.724 31 H 0.246 0.754 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.214 -3.214 0.316 11.670 hybrid contribution -0.101 1.387 -1.122 1.787 sum -11.315 -1.827 -0.806 11.490 Atomic orbital electron populations 1.21954 0.94915 1.02525 1.02397 1.21251 0.95949 0.91195 1.04727 1.21441 0.95798 1.00020 0.95261 0.84733 1.22908 0.75822 0.79805 0.88359 1.90691 1.37304 1.64925 1.45918 1.84487 1.74573 1.27824 1.45536 1.19831 0.87744 0.84666 0.78121 1.90744 1.68665 1.31096 1.48051 1.43544 1.08159 1.08740 1.69397 1.17616 0.80490 0.98773 0.98090 1.20288 0.94940 1.03581 1.06066 1.20418 0.93216 0.97707 0.99101 1.21053 0.98119 1.01570 1.03933 1.17372 0.91429 0.90713 0.88796 1.19555 0.97225 0.98712 1.33832 0.90314 1.25871 0.94864 0.98189 0.95070 1.69807 1.17460 1.20008 1.35127 0.86323 0.80883 0.78521 0.81052 1.19361 1.20357 1.18623 1.21088 0.94007 1.01188 1.03717 0.92959 0.92073 0.91202 0.89495 0.90188 0.72413 0.75437 0.88095 0.88960 0.88807 0.91004 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.65 37.15 0.36 -1.25 16 2 C -0.09 -1.14 4.40 -26.73 -0.12 -1.26 16 3 C -0.10 -1.31 2.66 -92.93 -0.25 -1.55 16 4 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 5 C 0.49 6.23 7.33 36.00 0.26 6.49 16 6 O -0.50 -7.31 14.73 -18.75 -0.28 -7.58 16 7 O -0.51 -5.42 11.77 -39.26 -0.46 -5.89 16 8 C 0.51 8.93 6.87 -10.98 -0.08 8.86 16 9 O -0.51 -10.66 13.67 5.55 0.08 -10.58 16 10 N -0.65 -12.22 5.17 -9.91 -0.05 -12.27 16 11 C 0.14 3.29 6.25 -83.77 -0.52 2.76 16 12 C -0.23 -5.34 8.66 -39.10 -0.34 -5.68 16 13 C -0.09 -1.98 10.02 -39.69 -0.40 -2.38 16 14 C -0.23 -5.59 9.79 -38.84 -0.38 -5.97 16 15 C 0.12 3.16 5.57 -106.85 -0.59 2.56 16 16 C -0.46 -12.09 9.06 -37.74 -0.34 -12.43 16 17 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 18 C 0.08 1.88 5.16 -17.35 -0.09 1.79 16 19 N -0.80 -19.74 10.94 55.55 0.61 -19.13 16 20 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.18 -4.51 8.60 -38.69 -0.33 -4.84 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.79 5.96 -51.93 -0.31 0.48 16 28 H 0.09 1.04 7.96 -51.93 -0.41 0.63 16 29 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 30 H 0.42 2.68 9.10 45.56 0.41 3.10 16 31 H 0.41 6.70 7.30 -40.82 -0.30 6.41 16 32 H 0.10 2.30 6.48 -52.49 -0.34 1.96 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 36 H 0.12 3.15 6.17 -52.49 -0.32 2.82 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -30.88 308.84 -6.64 -37.52 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -3.35 Total: 12.93 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.82 Total: -12.89 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.56 Total: -31.40 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.66 Total: -24.05 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.88 -6.64 -37.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609889963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.816 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds