Wall clock time and date at job start Mon Mar 30 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 H 1.09001 * 109.46996 * 55.00358 * 3 2 1 5 5 C 1.50695 * 109.47078 * 295.00255 * 3 2 1 6 6 O 1.20821 * 120.00179 * 359.97438 * 5 3 2 7 7 O 1.34230 * 119.99936 * 180.02562 * 5 3 2 8 8 C 1.50697 * 109.46926 * 174.99802 * 3 2 1 9 9 O 1.21285 * 120.00465 * 0.02562 * 8 3 2 10 10 N 1.34782 * 119.99924 * 179.97438 * 8 3 2 11 11 C 1.39936 * 120.00189 * 174.91198 * 10 8 3 12 12 C 1.39292 * 119.94495 * 325.54157 * 11 10 8 13 13 C 1.38493 * 120.42879 * 179.76338 * 12 11 10 14 14 C 1.37680 * 120.31789 * 0.51388 * 13 12 11 15 15 C 1.40746 * 119.88732 * 359.74220 * 14 13 12 16 16 C 1.41408 * 120.20857 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00122 * 25.13090 * 16 15 14 18 18 C 1.39936 * 119.99416 * 205.13125 * 16 15 14 19 19 N 1.30824 * 120.00486 * 16.78876 * 18 16 15 20 20 Si 1.86808 * 119.99604 * 196.78766 * 18 16 15 21 21 H 1.48501 * 109.46856 * 90.00225 * 20 18 16 22 22 H 1.48500 * 109.46671 * 210.00099 * 20 18 16 23 23 H 1.48499 * 109.46898 * 330.00020 * 20 18 16 24 24 C 1.38240 * 119.94770 * 145.81499 * 11 10 8 25 25 H 1.08998 * 109.47418 * 300.00100 * 1 2 3 26 26 H 1.08997 * 109.47480 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47298 * 59.99619 * 1 2 3 28 28 H 1.09001 * 109.47298 * 120.00381 * 2 1 3 29 29 H 1.08998 * 109.46894 * 239.99931 * 2 1 3 30 30 H 0.96698 * 117.00446 * 179.97438 * 7 5 3 31 31 H 0.97001 * 119.99908 * 354.91503 * 10 8 3 32 32 H 1.08002 * 119.78936 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.84154 * 180.23286 * 13 12 11 34 34 H 1.08001 * 120.06083 * 179.76648 * 14 13 12 35 35 H 0.96998 * 120.00200 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.15889 * 359.95906 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6413 2.1162 -1.2876 6 8 1.0140 1.5053 -2.1201 7 8 1.9840 3.3948 -1.5101 8 6 3.5419 1.4441 0.1239 9 8 4.1450 0.3949 0.2038 10 7 4.2150 2.6116 0.1448 11 6 5.5967 2.6188 0.3665 12 6 6.1685 1.6802 1.2223 13 6 7.5354 1.6750 1.4451 14 6 8.3432 2.6054 0.8307 15 6 7.7789 3.5632 -0.0325 16 6 8.6023 4.5215 -0.6675 17 1 9.6471 4.3079 -0.8376 18 6 8.0632 5.7467 -1.0755 19 7 6.9145 6.1485 -0.5951 20 14 8.9837 6.8086 -2.3063 21 1 8.5630 6.4474 -3.6839 22 1 8.6755 8.2392 -2.0536 23 1 10.4441 6.5834 -2.1595 24 6 6.3912 3.5609 -0.2597 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.7063 3.7839 -2.3507 31 1 3.7417 3.4469 0.0063 32 1 5.5424 0.9489 1.7119 33 1 7.9691 0.9406 2.1075 34 1 9.4081 2.5999 1.0103 35 1 6.5407 6.9975 -0.8783 36 1 5.9483 4.2915 -0.9204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609889963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:59 Heat of formation + Delta-G solvation = -138.084266 kcal Electronic energy + Delta-G solvation = -21249.373787 eV Core-core repulsion = 17889.934568 eV Total energy + Delta-G solvation = -3359.439219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10168 -40.78360 -39.06178 -37.45108 -36.05600 -35.35174 -35.05521 -31.50171 -30.92430 -29.16097 -27.16592 -24.41618 -23.78886 -23.05611 -21.79147 -21.02617 -19.53485 -19.24362 -18.58742 -18.19114 -17.48554 -16.82019 -16.50171 -16.37015 -15.77267 -15.51052 -14.97196 -14.80776 -14.54704 -14.32738 -14.15949 -13.57762 -13.42846 -13.10765 -12.85506 -12.81227 -12.76726 -12.60183 -12.34364 -12.27702 -12.04956 -11.84762 -11.57542 -11.46351 -11.20915 -10.99363 -10.69897 -9.32777 -8.87165 -8.54789 -6.34769 0.69584 0.91556 1.04813 1.41308 1.44764 1.53166 1.59154 2.04891 2.16698 2.23325 2.76068 3.29210 3.64366 3.73653 3.94999 4.25120 4.44209 4.46771 4.50605 4.72608 4.79436 4.85107 5.09642 5.10868 5.15789 5.19370 5.21594 5.30532 5.36540 5.57807 5.76533 5.84092 6.02970 6.09449 6.31768 6.52206 6.71567 6.82401 6.94615 6.97099 7.16440 8.35384 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021480 B = 0.004969 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.241961 B = 5633.896842 C = 6703.780301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.093 4.093 4 H 0.174 0.826 5 C 0.495 3.505 6 O -0.521 6.521 7 O -0.509 6.509 8 C 0.513 3.487 9 O -0.546 6.546 10 N -0.650 5.650 11 C 0.147 3.853 12 C -0.239 4.239 13 C -0.084 4.084 14 C -0.248 4.248 15 C 0.092 3.908 16 C -0.499 4.499 17 H 0.075 0.925 18 C 0.040 3.960 19 N -0.819 5.819 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.262 1.262 24 C -0.200 4.200 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.435 0.565 31 H 0.420 0.580 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.289 0.711 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.579 -1.633 0.091 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.130 4.130 3 C -0.115 4.115 4 H 0.191 0.809 5 C 0.337 3.663 6 O -0.410 6.410 7 O -0.324 6.324 8 C 0.300 3.700 9 O -0.423 6.423 10 N -0.296 5.296 11 C 0.054 3.946 12 C -0.260 4.260 13 C -0.103 4.103 14 C -0.268 4.268 15 C 0.089 3.911 16 C -0.529 4.529 17 H 0.093 0.907 18 C -0.175 4.175 19 N -0.445 5.445 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.190 1.190 23 H -0.186 1.186 24 C -0.222 4.222 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.298 0.702 31 H 0.259 0.741 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.427 -2.499 0.292 12.679 hybrid contribution 0.222 1.148 -1.083 1.594 sum -12.205 -1.351 -0.791 12.305 Atomic orbital electron populations 1.21895 0.92882 1.03381 1.02862 1.21255 0.97570 0.90543 1.03665 1.21462 0.91845 1.01170 0.96999 0.80879 1.22795 0.75434 0.80212 0.87903 1.90699 1.38402 1.65549 1.46344 1.84444 1.74158 1.26813 1.46951 1.20566 0.89601 0.83443 0.76397 1.90725 1.70039 1.32219 1.49341 1.43521 1.06587 1.10000 1.69497 1.17688 0.82493 0.97595 0.96851 1.20504 0.95323 1.03864 1.06343 1.20743 0.93197 0.97595 0.98745 1.21229 0.98796 1.02174 1.04574 1.17769 0.92349 0.91520 0.89477 1.19798 0.97374 1.00003 1.35712 0.90687 1.26654 0.95761 0.98878 0.96222 1.69835 1.18405 1.20763 1.35499 0.85240 0.79354 0.77037 0.78298 1.18908 1.19020 1.18568 1.21038 0.94080 1.02197 1.04876 0.90734 0.91136 0.92366 0.89294 0.92621 0.70219 0.74116 0.87448 0.86126 0.88117 0.89991 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.65 71.98 0.69 -2.01 16 2 C -0.09 -2.12 4.40 30.59 0.13 -1.98 16 3 C -0.09 -2.17 2.66 -12.29 -0.03 -2.20 16 4 H 0.17 2.71 8.14 -2.39 -0.02 2.69 16 5 C 0.49 11.66 7.33 71.23 0.52 12.18 16 6 O -0.52 -14.47 14.73 21.98 0.32 -14.15 16 7 O -0.51 -9.72 11.77 -51.41 -0.61 -10.33 16 8 C 0.51 17.35 6.87 87.66 0.60 17.95 16 9 O -0.55 -22.60 13.67 -3.05 -0.04 -22.64 16 10 N -0.65 -23.79 5.17 -303.65 -1.57 -25.36 16 11 C 0.15 6.81 6.25 38.10 0.24 7.05 16 12 C -0.24 -11.18 8.66 22.58 0.20 -10.98 16 13 C -0.08 -3.88 10.02 22.20 0.22 -3.66 16 14 C -0.25 -12.41 9.79 22.75 0.22 -12.19 16 15 C 0.09 4.95 5.57 -21.31 -0.12 4.83 16 16 C -0.50 -26.61 9.06 23.46 0.21 -26.40 16 17 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 18 C 0.04 1.96 5.16 85.25 0.44 2.40 16 19 N -0.82 -40.52 10.94 21.82 0.24 -40.28 16 20 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.20 -10.30 8.60 22.85 0.20 -10.10 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.19 5.96 -2.39 -0.01 1.18 16 28 H 0.09 2.00 7.96 -2.39 -0.02 1.98 16 29 H 0.05 1.54 7.95 -2.39 -0.02 1.52 16 30 H 0.43 4.69 9.10 -74.06 -0.67 4.01 16 31 H 0.42 13.27 7.30 -92.71 -0.68 12.59 16 32 H 0.11 4.84 6.48 -2.91 -0.02 4.82 16 33 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.29 12.79 8.30 -92.71 -0.77 12.02 16 36 H 0.11 5.97 6.17 -2.91 -0.02 5.95 16 Total: -1.00 -67.22 308.84 3.69 -63.53 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.22 Total: 35.21 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.53 Total: -25.10 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.33 Total: -65.64 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.32 Total: -47.12 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -67.22 3.69 -63.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609889963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.557 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds