Wall clock time and date at job start Mon Mar 30 2020 01:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31002 * 119.99257 * 2 1 4 4 C 1.50695 * 120.00386 * 4.96020 * 3 2 1 5 5 H 1.09002 * 109.47199 * 4.57935 * 4 3 2 6 6 O 1.42902 * 109.47238 * 124.57807 * 4 3 2 7 7 C 1.50700 * 109.47091 * 244.57848 * 4 3 2 8 8 O 1.21287 * 119.99774 * 244.99652 * 7 4 3 9 9 N 1.34770 * 120.00213 * 65.00253 * 7 4 3 10 10 C 1.39920 * 120.00345 * 175.60882 * 9 7 4 11 11 C 1.38967 * 120.03919 * 215.16710 * 10 9 7 12 12 C 1.38156 * 120.06704 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.14062 * 359.74989 * 12 11 10 14 14 C 1.38904 * 120.06906 * 0.50689 * 13 12 11 15 15 O 1.35749 * 120.03337 * 179.76894 * 14 13 12 16 16 C 1.34830 * 117.00126 * 354.26920 * 15 14 13 17 17 H 1.07999 * 119.99898 * 5.02562 * 16 15 14 18 18 C 1.38648 * 120.00392 * 185.02999 * 16 15 14 19 19 N 1.31564 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46850 * 60.00342 * 20 18 16 22 22 H 1.48505 * 109.47560 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47605 * 300.00308 * 20 18 16 24 24 C 1.38714 * 120.03581 * 35.14609 * 10 9 7 25 25 H 1.08997 * 109.47472 * 64.84349 * 1 2 3 26 26 H 1.09006 * 109.46344 * 184.84184 * 1 2 3 27 27 H 1.08994 * 109.47298 * 304.83924 * 1 2 3 28 28 H 1.07998 * 120.00215 * 180.02562 * 2 1 3 29 29 H 1.08007 * 119.99452 * 184.95958 * 3 2 1 30 30 H 0.96704 * 114.00058 * 64.95192 * 6 4 3 31 31 H 0.97005 * 119.99708 * 355.60921 * 9 7 4 32 32 H 1.07998 * 119.96456 * 0.02562 * 11 10 9 33 33 H 1.07997 * 119.92640 * 180.02562 * 12 11 10 34 34 H 1.07995 * 119.96273 * 180.25248 * 13 12 11 35 35 H 0.96995 * 119.99952 * 179.97438 * 19 18 16 36 36 H 1.08004 * 120.06966 * 0.03964 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4126 2.4372 0.1128 5 1 0.3526 2.2345 0.2661 6 8 1.9197 3.1840 1.2206 7 6 1.5939 3.2324 -1.1544 8 8 2.1876 4.2897 -1.1271 9 7 1.0963 2.7688 -2.3179 10 6 1.1836 3.5487 -3.4763 11 6 0.1594 3.5170 -4.4151 12 6 0.2447 4.2872 -5.5589 13 6 1.3455 5.0949 -5.7708 14 6 2.3750 5.1270 -4.8389 15 8 3.4583 5.9173 -5.0501 16 6 3.5295 6.5540 -6.2364 17 1 2.7083 6.4882 -6.9348 18 6 4.6571 7.2932 -6.5600 19 7 5.6577 7.3729 -5.7096 20 14 4.7560 8.1747 -8.2039 21 1 3.6436 9.1528 -8.3088 22 1 6.0539 8.8892 -8.3052 23 1 4.6490 7.1834 -9.3045 24 6 2.2924 4.3546 -3.6888 25 1 -0.3634 0.4368 -0.9301 26 1 -0.3632 -1.0241 0.0867 27 1 -0.3633 0.5870 0.8434 28 1 2.0471 -0.9353 -0.0004 29 1 3.2389 1.1364 -0.0809 30 1 2.8391 3.4656 1.1173 31 1 0.6776 1.8945 -2.3522 32 1 -0.7045 2.8903 -4.2499 33 1 -0.5527 4.2611 -6.2867 34 1 1.4073 5.6989 -6.6639 35 1 6.4467 7.8897 -5.9361 36 1 3.0898 4.3808 -2.9609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625875636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:57 Heat of formation + Delta-G solvation = -64.182789 kcal Electronic energy + Delta-G solvation = -20775.878238 eV Core-core repulsion = 17419.643627 eV Total energy + Delta-G solvation = -3356.234611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49105 -38.83417 -37.32623 -36.33782 -35.06055 -33.92737 -32.24698 -29.82869 -29.03122 -28.03158 -26.16276 -25.24441 -22.50590 -21.48191 -20.56552 -19.45096 -18.40948 -17.97529 -17.06334 -16.74008 -15.63402 -15.53509 -15.08906 -14.98904 -14.48447 -14.23180 -13.73226 -13.66313 -13.49458 -13.44643 -13.07143 -12.67443 -12.52828 -12.15857 -11.77391 -11.73079 -11.52841 -11.22852 -10.99456 -10.81576 -10.69370 -10.48607 -9.92613 -9.77915 -9.42106 -9.06870 -8.81492 -7.73431 -7.19889 -6.42001 -4.01414 1.66242 1.98405 2.32759 2.74950 3.11205 3.15424 3.17126 3.19046 3.98458 4.25393 4.40762 4.53474 4.62879 4.72318 4.88124 5.00452 5.12763 5.23535 5.33732 5.54486 5.60779 5.64958 5.80748 6.07714 6.16089 6.19774 6.31983 6.36641 6.65619 6.83647 7.01664 7.06118 7.31541 7.33911 7.46564 7.64307 7.77113 8.02540 8.24573 9.02645 9.73637 10.75788 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.003896 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.343183 B = 7185.444960 C = 7836.208895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.123 3.877 5 H 0.130 0.870 6 O -0.533 6.533 7 C 0.480 3.520 8 O -0.502 6.502 9 N -0.663 5.663 10 C 0.171 3.829 11 C -0.235 4.235 12 C -0.058 4.058 13 C -0.244 4.244 14 C 0.166 3.834 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.186 4.186 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.387 0.613 31 H 0.405 0.595 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.271 0.729 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 -14.124 7.663 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.217 4.217 4 C 0.060 3.940 5 H 0.147 0.853 6 O -0.339 6.339 7 C 0.266 3.734 8 O -0.375 6.375 9 N -0.309 5.309 10 C 0.078 3.922 11 C -0.256 4.256 12 C -0.077 4.077 13 C -0.264 4.264 14 C 0.111 3.889 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.208 4.208 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.237 0.763 31 H 0.240 0.760 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.081 0.919 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.671 -13.265 8.150 18.327 hybrid contribution 0.389 0.024 -1.185 1.247 sum -9.282 -13.241 6.965 17.606 Atomic orbital electron populations 1.21046 0.93105 1.03176 1.02360 1.22917 0.96403 0.97878 0.97715 1.23282 1.00862 0.93813 1.03792 1.20932 1.00037 0.88146 0.84868 0.85296 1.86600 1.34370 1.73883 1.39037 1.21614 0.79420 0.86914 0.85482 1.90816 1.38917 1.22349 1.85456 1.43377 1.59758 1.20307 1.07445 1.17212 0.93994 0.94816 0.86134 1.20270 0.99014 1.08425 0.97936 1.20504 0.96704 0.94734 0.95776 1.21183 0.96252 1.06240 1.02753 1.19140 0.87871 0.89274 0.92577 1.83991 1.36219 1.51185 1.36181 1.21306 1.04065 1.28904 0.92654 0.89021 1.25306 0.94395 0.97316 0.99503 1.70046 1.05987 1.38402 1.35075 0.85772 0.78098 0.79257 0.80225 1.19481 1.20282 1.19490 1.20151 0.99319 1.02362 0.98926 0.91225 0.91356 0.90871 0.86359 0.86054 0.76292 0.76025 0.87379 0.86992 0.85421 0.91949 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.80 36.01 0.32 -0.48 16 2 C -0.13 -0.94 10.26 -36.02 -0.37 -1.30 16 3 C -0.20 -1.82 9.06 -36.03 -0.33 -2.14 16 4 C 0.12 1.37 3.55 -29.04 -0.10 1.27 16 5 H 0.13 1.19 5.74 -51.93 -0.30 0.89 16 6 O -0.53 -6.74 13.04 -55.09 -0.72 -7.46 16 7 C 0.48 7.37 6.99 -10.99 -0.08 7.29 16 8 O -0.50 -10.20 13.66 -14.31 -0.20 -10.40 16 9 N -0.66 -9.55 5.29 -9.88 -0.05 -9.60 16 10 C 0.17 3.22 6.29 -83.72 -0.53 2.69 16 11 C -0.24 -4.02 9.96 -39.34 -0.39 -4.42 16 12 C -0.06 -1.06 10.03 -39.64 -0.40 -1.46 16 13 C -0.24 -5.41 9.16 -39.36 -0.36 -5.77 16 14 C 0.17 4.22 6.64 -39.14 -0.26 3.96 16 15 O -0.17 -5.14 9.76 0.05 0.00 -5.14 16 16 C -0.39 -11.24 9.49 30.88 0.29 -10.94 16 17 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 19 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 20 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 C -0.19 -4.32 8.64 -39.21 -0.34 -4.66 16 25 H 0.07 0.35 7.72 -51.93 -0.40 -0.05 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.42 7.16 -51.93 -0.37 0.05 16 28 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.39 4.25 8.64 45.56 0.39 4.64 16 31 H 0.40 4.19 8.37 -40.82 -0.34 3.85 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.13 3.28 6.24 -52.48 -0.33 2.95 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -34.91 314.08 -6.30 -41.21 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.16 Total: 10.93 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.64 Total: -14.97 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.71 Total: -34.66 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.91 Total: -22.99 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.91 -6.30 -41.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625875636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.972 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds