Wall clock time and date at job start Mon Mar 30 2020 01:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31002 * 119.99257 * 2 1 4 4 C 1.50695 * 120.00386 * 4.96020 * 3 2 1 5 5 H 1.09002 * 109.47199 * 4.57935 * 4 3 2 6 6 O 1.42902 * 109.47238 * 124.57807 * 4 3 2 7 7 C 1.50700 * 109.47091 * 244.57848 * 4 3 2 8 8 O 1.21287 * 119.99774 * 244.99652 * 7 4 3 9 9 N 1.34770 * 120.00213 * 65.00253 * 7 4 3 10 10 C 1.39920 * 120.00345 * 175.60882 * 9 7 4 11 11 C 1.38967 * 120.03919 * 215.16710 * 10 9 7 12 12 C 1.38156 * 120.06704 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.14062 * 359.74989 * 12 11 10 14 14 C 1.38904 * 120.06906 * 0.50689 * 13 12 11 15 15 O 1.35749 * 120.03337 * 179.76894 * 14 13 12 16 16 C 1.34830 * 117.00126 * 354.26920 * 15 14 13 17 17 H 1.07999 * 119.99898 * 5.02562 * 16 15 14 18 18 C 1.38648 * 120.00392 * 185.02999 * 16 15 14 19 19 N 1.31564 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46850 * 60.00342 * 20 18 16 22 22 H 1.48505 * 109.47560 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47605 * 300.00308 * 20 18 16 24 24 C 1.38714 * 120.03581 * 35.14609 * 10 9 7 25 25 H 1.08997 * 109.47472 * 64.84349 * 1 2 3 26 26 H 1.09006 * 109.46344 * 184.84184 * 1 2 3 27 27 H 1.08994 * 109.47298 * 304.83924 * 1 2 3 28 28 H 1.07998 * 120.00215 * 180.02562 * 2 1 3 29 29 H 1.08007 * 119.99452 * 184.95958 * 3 2 1 30 30 H 0.96704 * 114.00058 * 64.95192 * 6 4 3 31 31 H 0.97005 * 119.99708 * 355.60921 * 9 7 4 32 32 H 1.07998 * 119.96456 * 0.02562 * 11 10 9 33 33 H 1.07997 * 119.92640 * 180.02562 * 12 11 10 34 34 H 1.07995 * 119.96273 * 180.25248 * 13 12 11 35 35 H 0.96995 * 119.99952 * 179.97438 * 19 18 16 36 36 H 1.08004 * 120.06966 * 0.03964 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4126 2.4372 0.1128 5 1 0.3526 2.2345 0.2661 6 8 1.9197 3.1840 1.2206 7 6 1.5939 3.2324 -1.1544 8 8 2.1876 4.2897 -1.1271 9 7 1.0963 2.7688 -2.3179 10 6 1.1836 3.5487 -3.4763 11 6 0.1594 3.5170 -4.4151 12 6 0.2447 4.2872 -5.5589 13 6 1.3455 5.0949 -5.7708 14 6 2.3750 5.1270 -4.8389 15 8 3.4583 5.9173 -5.0501 16 6 3.5295 6.5540 -6.2364 17 1 2.7083 6.4882 -6.9348 18 6 4.6571 7.2932 -6.5600 19 7 5.6577 7.3729 -5.7096 20 14 4.7560 8.1747 -8.2039 21 1 3.6436 9.1528 -8.3088 22 1 6.0539 8.8892 -8.3052 23 1 4.6490 7.1834 -9.3045 24 6 2.2924 4.3546 -3.6888 25 1 -0.3634 0.4368 -0.9301 26 1 -0.3632 -1.0241 0.0867 27 1 -0.3633 0.5870 0.8434 28 1 2.0471 -0.9353 -0.0004 29 1 3.2389 1.1364 -0.0809 30 1 2.8391 3.4656 1.1173 31 1 0.6776 1.8945 -2.3522 32 1 -0.7045 2.8903 -4.2499 33 1 -0.5527 4.2611 -6.2867 34 1 1.4073 5.6989 -6.6639 35 1 6.4467 7.8897 -5.9361 36 1 3.0898 4.3808 -2.9609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625875636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:56 Heat of formation + Delta-G solvation = -90.877846 kcal Electronic energy + Delta-G solvation = -20777.035822 eV Core-core repulsion = 17419.643627 eV Total energy + Delta-G solvation = -3357.392195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.81653 -40.51721 -38.67031 -37.72740 -36.06458 -35.17228 -34.26925 -31.36563 -30.48912 -29.02665 -27.41006 -26.87621 -23.99997 -23.12595 -21.92456 -20.23929 -20.01449 -19.45657 -18.73226 -17.77750 -16.96784 -16.80365 -16.67561 -16.20196 -15.99318 -15.92736 -15.51050 -15.02507 -14.53661 -14.37674 -14.27584 -14.13103 -13.60490 -13.56831 -13.21414 -12.99943 -12.69837 -12.65499 -12.63814 -12.36014 -12.17133 -11.63564 -11.43528 -11.22371 -10.79099 -10.75209 -10.07731 -9.38701 -8.90689 -8.47562 -6.17603 0.35935 0.68182 1.03652 1.34051 1.43346 1.49777 1.51765 1.91282 2.18623 2.81405 3.13280 3.32486 3.42000 3.67343 3.80716 3.90482 4.12469 4.28527 4.34809 4.39586 4.47774 4.66053 4.71998 4.84413 5.02085 5.05929 5.09693 5.13353 5.37322 5.41829 5.58324 5.61529 5.72061 5.72339 6.01499 6.16812 6.26291 6.49355 6.95796 7.04563 7.78077 8.76084 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.003896 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.343183 B = 7185.444960 C = 7836.208895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.229 4.229 4 C 0.137 3.863 5 H 0.157 0.843 6 O -0.548 6.548 7 C 0.476 3.524 8 O -0.560 6.560 9 N -0.645 5.645 10 C 0.178 3.822 11 C -0.203 4.203 12 C -0.048 4.048 13 C -0.254 4.254 14 C 0.125 3.875 15 O -0.235 6.235 16 C -0.417 4.417 17 H 0.107 0.893 18 C -0.027 4.027 19 N -0.924 5.924 20 Si 1.024 2.976 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.253 1.253 24 C -0.214 4.214 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.391 0.609 31 H 0.429 0.571 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.272 0.728 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.902 -16.871 6.800 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.248 4.248 4 C 0.075 3.925 5 H 0.174 0.826 6 O -0.355 6.355 7 C 0.264 3.736 8 O -0.437 6.437 9 N -0.294 5.294 10 C 0.084 3.916 11 C -0.223 4.223 12 C -0.067 4.067 13 C -0.274 4.274 14 C 0.074 3.926 15 O -0.142 6.142 16 C -0.492 4.492 17 H 0.124 0.876 18 C -0.224 4.224 19 N -0.563 5.563 20 Si 0.842 3.158 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.177 1.177 24 C -0.236 4.236 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.241 0.759 31 H 0.269 0.731 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.690 -16.103 7.312 22.365 hybrid contribution 1.336 0.568 -0.724 1.622 sum -12.354 -15.535 6.588 20.913 Atomic orbital electron populations 1.21191 0.91627 1.04590 1.03090 1.23238 0.97563 0.97530 0.93596 1.23068 1.00520 0.93382 1.07787 1.21047 1.01716 0.87885 0.81835 0.82616 1.86556 1.34837 1.74387 1.39682 1.22615 0.77727 0.86346 0.86874 1.90812 1.41316 1.25207 1.86408 1.43278 1.59344 1.20854 1.05884 1.17392 0.92786 0.93720 0.87743 1.20927 0.99064 1.06574 0.95736 1.21062 0.96039 0.92618 0.96941 1.21347 0.96833 1.07291 1.01947 1.19696 0.88260 0.90240 0.94439 1.83958 1.38933 1.53918 1.37395 1.21893 1.05034 1.29298 0.93015 0.87565 1.26727 0.93548 0.98006 1.04080 1.70220 1.07178 1.40776 1.38080 0.84582 0.78501 0.78110 0.74559 1.17990 1.19759 1.17720 1.20188 1.00766 1.04463 0.98164 0.89911 0.89671 0.90615 0.84749 0.86979 0.75905 0.73102 0.81586 0.82062 0.85815 0.91859 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.80 71.24 0.63 -0.38 16 2 C -0.10 -1.09 10.26 25.65 0.26 -0.83 16 3 C -0.23 -3.79 9.06 25.64 0.23 -3.55 16 4 C 0.14 2.88 3.55 29.10 0.10 2.98 16 5 H 0.16 2.36 5.74 -2.39 -0.01 2.35 16 6 O -0.55 -13.83 13.04 -129.99 -1.70 -15.53 16 7 C 0.48 14.48 6.99 87.66 0.61 15.09 16 8 O -0.56 -24.05 13.66 15.94 0.22 -23.83 16 9 N -0.65 -17.13 5.29 -303.56 -1.61 -18.74 16 10 C 0.18 6.39 6.29 38.14 0.24 6.63 16 11 C -0.20 -5.92 9.96 22.42 0.22 -5.70 16 12 C -0.05 -1.56 10.03 22.23 0.22 -1.34 16 13 C -0.25 -11.22 9.16 22.41 0.21 -11.01 16 14 C 0.12 6.69 6.64 22.56 0.15 6.84 16 15 O -0.24 -15.20 9.76 -22.72 -0.22 -15.43 16 16 C -0.42 -25.25 9.49 67.92 0.64 -24.61 16 17 H 0.11 5.78 5.20 -2.91 -0.02 5.77 16 18 C -0.03 -1.57 5.49 84.83 0.47 -1.10 16 19 N -0.92 -59.38 13.67 21.61 0.30 -59.09 16 20 Si 1.02 43.92 29.55 68.60 2.03 45.95 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 24 C -0.21 -10.45 8.64 22.51 0.19 -10.25 16 25 H 0.08 0.39 7.72 -2.39 -0.02 0.37 16 26 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 27 H 0.08 0.54 7.16 -2.39 -0.02 0.53 16 28 H 0.13 1.07 8.06 -2.91 -0.02 1.05 16 29 H 0.11 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.39 9.15 8.64 -74.05 -0.64 8.51 16 31 H 0.43 7.01 8.37 -92.70 -0.78 6.23 16 32 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 34 H 0.12 5.45 5.63 -2.91 -0.02 5.43 16 35 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 36 H 0.10 5.43 6.24 -2.91 -0.02 5.41 16 Total: -1.00 -86.27 314.08 2.92 -83.35 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.28 Total: 30.55 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.19 Total: -27.24 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.31 Total: -77.83 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -1.70 Total: -54.79 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -86.27 2.92 -83.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625875636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.528 kcal (2) G-P(sol) polarization free energy of solvation -86.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds