Wall clock time and date at job start Mon Mar 30 2020 01:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31002 * 119.99912 * 2 1 4 4 C 1.50699 * 120.00053 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47304 * 245.00309 * 4 3 2 6 6 O 1.42898 * 109.47112 * 5.00052 * 4 3 2 7 7 C 1.50703 * 109.46994 * 125.00059 * 4 3 2 8 8 O 1.21290 * 120.00013 * 244.99861 * 7 4 3 9 9 N 1.34777 * 119.99855 * 65.00183 * 7 4 3 10 10 C 1.39928 * 119.99751 * 175.49989 * 9 7 4 11 11 C 1.38966 * 120.03405 * 215.14368 * 10 9 7 12 12 C 1.38152 * 120.06254 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.14209 * 359.73695 * 12 11 10 14 14 C 1.38904 * 120.06972 * 0.51826 * 13 12 11 15 15 O 1.35751 * 120.03345 * 179.76433 * 14 13 12 16 16 C 1.34832 * 117.00157 * 354.35166 * 15 14 13 17 17 H 1.07993 * 119.99794 * 5.01881 * 16 15 14 18 18 C 1.38653 * 119.99845 * 185.02502 * 16 15 14 19 19 N 1.31548 * 120.00176 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99586 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47340 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47293 * 120.00231 * 20 18 16 23 23 H 1.48504 * 109.47245 * 239.99959 * 20 18 16 24 24 C 1.38710 * 120.03264 * 35.11919 * 10 9 7 25 25 H 1.09001 * 109.47099 * 60.00387 * 1 2 3 26 26 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47283 * 299.99872 * 1 2 3 28 28 H 1.07996 * 120.00162 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99971 * 0.02562 * 3 2 1 30 30 H 0.96701 * 114.00355 * 59.99950 * 6 4 3 31 31 H 0.96999 * 120.00261 * 355.50043 * 9 7 4 32 32 H 1.08003 * 119.96293 * 359.97438 * 11 10 9 33 33 H 1.08003 * 119.92920 * 180.02562 * 12 11 10 34 34 H 1.08000 * 119.96261 * 180.25444 * 13 12 11 35 35 H 0.97003 * 120.00130 * 179.97438 * 19 18 16 36 36 H 1.07993 * 120.07579 * 0.04687 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1346 0.0006 5 1 4.0320 1.5690 0.9320 6 8 4.1454 -0.2076 -0.1164 7 6 4.1717 1.9493 -1.1633 8 8 4.7928 1.4124 -2.0561 9 7 3.9313 3.2745 -1.2120 10 6 4.4775 4.0472 -2.2428 11 6 4.8879 5.3510 -1.9922 12 6 5.4277 6.1143 -3.0093 13 6 5.5664 5.5826 -4.2771 14 6 5.1531 4.2818 -4.5352 15 8 5.2853 3.7618 -5.7822 16 6 5.7152 4.5954 -6.7507 17 1 6.0144 5.6029 -6.5024 18 6 5.7731 4.1592 -8.0656 19 7 5.4090 2.9319 -8.3681 20 14 6.3680 5.3145 -9.4075 21 1 6.7151 6.6293 -8.8107 22 1 7.5682 4.7356 -10.0629 23 1 5.2932 5.4974 -10.4157 24 6 4.6103 3.5124 -3.5157 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.0470 -0.9353 0.0004 29 1 1.6220 2.0698 0.0004 30 1 3.8604 -0.6572 -0.9237 31 1 3.3796 3.6927 -0.5325 32 1 4.7847 5.7680 -1.0012 33 1 5.7464 7.1272 -2.8120 34 1 5.9926 6.1804 -5.0691 35 1 5.4491 2.6268 -9.2880 36 1 4.2917 2.4996 -3.7132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625875637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:59 Heat of formation + Delta-G solvation = -66.091844 kcal Electronic energy + Delta-G solvation = -20607.107998 eV Core-core repulsion = 17250.790605 eV Total energy + Delta-G solvation = -3356.317394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45897 -38.84513 -37.46668 -36.32178 -34.51357 -33.94873 -32.24877 -30.23448 -29.24704 -28.14432 -25.60784 -25.15294 -22.41156 -21.43135 -20.48369 -19.71428 -18.37039 -17.93128 -17.15354 -16.80837 -16.03368 -15.31221 -15.06688 -14.66807 -14.48322 -14.21564 -13.78318 -13.60165 -13.52157 -13.31436 -13.01443 -12.73859 -12.52103 -12.03214 -11.75047 -11.55149 -11.51580 -11.24744 -11.03977 -10.98654 -10.76197 -10.43885 -9.92914 -9.77845 -9.35540 -9.00304 -8.82202 -7.72934 -7.19438 -6.42147 -4.01339 1.72600 2.02100 2.33181 2.76938 3.13010 3.14941 3.19310 3.21420 3.98413 4.05951 4.40995 4.54043 4.73236 4.80225 5.04940 5.12378 5.15164 5.34340 5.36192 5.43346 5.61462 5.66988 5.81423 6.08278 6.20227 6.28442 6.36860 6.40894 6.66082 6.84369 7.02308 7.06951 7.27484 7.34475 7.47007 7.64950 7.77835 8.02728 8.26417 9.02829 9.74046 10.75834 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.003875 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.497675 B = 7223.670969 C = 7878.288671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 C -0.209 4.209 4 C 0.129 3.871 5 H 0.133 0.867 6 O -0.536 6.536 7 C 0.482 3.518 8 O -0.501 6.501 9 N -0.664 5.664 10 C 0.172 3.828 11 C -0.235 4.235 12 C -0.059 4.059 13 C -0.245 4.245 14 C 0.166 3.834 15 O -0.174 6.174 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.187 4.187 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.386 0.614 31 H 0.406 0.594 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.269 0.731 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -0.170 16.566 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.228 4.228 4 C 0.066 3.934 5 H 0.150 0.850 6 O -0.341 6.341 7 C 0.268 3.732 8 O -0.374 6.374 9 N -0.311 5.311 10 C 0.079 3.921 11 C -0.256 4.256 12 C -0.078 4.078 13 C -0.264 4.264 14 C 0.112 3.888 15 O -0.077 6.077 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.495 5.495 20 Si 0.767 3.233 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.208 4.208 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.236 0.764 31 H 0.241 0.759 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.087 -0.882 16.205 17.709 hybrid contribution -0.190 0.855 -0.832 1.208 sum -7.277 -0.027 15.373 17.008 Atomic orbital electron populations 1.20896 0.92585 1.02727 1.02306 1.22929 0.96478 0.98582 0.97094 1.23248 0.94678 0.99715 1.05169 1.20699 0.91503 0.84035 0.97129 0.84957 1.86570 1.77279 1.23590 1.46677 1.21557 0.80321 0.82729 0.88612 1.90818 1.38581 1.70382 1.37646 1.43384 1.51429 1.07952 1.28325 1.17207 0.97614 0.90764 0.86541 1.20277 1.11477 0.94620 0.99249 1.20507 0.96750 0.98171 0.92325 1.21187 1.10265 0.97002 0.97989 1.19143 0.91893 0.91054 0.86756 1.83994 1.73408 1.37411 1.12850 1.21403 1.43999 0.95772 0.85650 0.88917 1.25309 0.96966 0.96969 0.97326 1.70061 1.43947 1.15814 1.19665 0.85635 0.78467 0.79306 0.79922 1.19076 1.20139 1.20154 1.20159 1.08779 1.01795 0.90046 0.91238 0.91766 0.91396 0.86250 0.85934 0.76387 0.75916 0.87339 0.87006 0.85422 0.92061 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 10.17 36.01 0.37 -0.53 16 2 C -0.13 -1.13 9.46 -36.03 -0.34 -1.47 16 3 C -0.21 -1.87 9.07 -36.03 -0.33 -2.20 16 4 C 0.13 1.40 3.93 -29.03 -0.11 1.28 16 5 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 6 O -0.54 -6.52 11.84 -55.09 -0.65 -7.17 16 7 C 0.48 7.31 7.00 -10.98 -0.08 7.24 16 8 O -0.50 -10.23 13.77 -14.31 -0.20 -10.42 16 9 N -0.66 -9.38 5.29 -9.88 -0.05 -9.43 16 10 C 0.17 3.21 6.30 -83.72 -0.53 2.68 16 11 C -0.24 -4.01 9.96 -39.34 -0.39 -4.40 16 12 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 13 C -0.24 -5.43 9.17 -39.36 -0.36 -5.79 16 14 C 0.17 4.23 6.64 -39.13 -0.26 3.97 16 15 O -0.17 -5.18 9.76 0.04 0.00 -5.18 16 16 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 17 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 20 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 C -0.19 -4.33 8.64 -39.21 -0.34 -4.67 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.12 0.99 6.56 -52.49 -0.34 0.65 16 29 H 0.12 0.91 8.05 -52.49 -0.42 0.49 16 30 H 0.39 4.16 8.03 45.56 0.37 4.52 16 31 H 0.41 3.90 8.80 -40.82 -0.36 3.54 16 32 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 3.29 6.23 -52.49 -0.33 2.96 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -35.14 316.02 -6.30 -41.44 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -3.33 Total: 10.58 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.57 Total: -15.30 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.71 Total: -34.51 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.85 Total: -22.77 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.14 -6.30 -41.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625875637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.652 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds