Wall clock time and date at job start Mon Mar 30 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.46851 * 2 1 4 4 H 1.09001 * 109.47582 * 55.75807 * 3 2 1 5 5 C 1.50703 * 109.46780 * 175.75790 * 3 2 1 6 6 H 1.07998 * 119.99664 * 119.99941 * 5 3 2 7 7 C 1.37876 * 120.00058 * 299.99677 * 5 3 2 8 8 N 1.31510 * 119.99998 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99790 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47271 * 89.99927 * 9 7 5 11 11 H 1.48503 * 109.47057 * 209.99264 * 9 7 5 12 12 H 1.48492 * 109.47202 * 329.99903 * 9 7 5 13 13 N 1.46898 * 109.47120 * 295.75329 * 3 2 1 14 14 C 1.46900 * 110.99931 * 152.47806 * 13 3 2 15 15 H 1.09000 * 108.77985 * 328.45352 * 14 13 3 16 16 C 1.54213 * 108.92620 * 87.05733 * 14 13 3 17 17 S 1.83821 * 103.02298 * 145.87935 * 16 14 13 18 18 O 1.42105 * 109.81001 * 77.60011 * 17 16 14 19 19 O 1.42103 * 109.81099 * 211.94232 * 17 16 14 20 20 C 1.83813 * 94.23765 * 324.77042 * 17 16 14 21 21 C 1.52842 * 109.10159 * 209.64567 * 14 13 3 22 22 H 1.09001 * 108.87951 * 118.52903 * 21 14 13 23 23 O 1.42899 * 108.89967 * 0.05325 * 21 14 13 24 24 C 1.42898 * 114.00119 * 145.68745 * 23 21 14 25 25 H 1.08998 * 109.46765 * 175.73819 * 1 2 3 26 26 H 1.08997 * 109.46979 * 295.73971 * 1 2 3 27 27 H 1.08996 * 109.46692 * 55.73807 * 1 2 3 28 28 H 1.08996 * 109.47031 * 239.99868 * 2 1 3 29 29 H 1.08994 * 109.46846 * 120.00093 * 2 1 3 30 30 H 0.97001 * 119.99973 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00798 * 276.43165 * 13 3 2 32 32 H 1.08996 * 110.73326 * 27.44440 * 16 14 13 33 33 H 1.09000 * 110.73088 * 264.31173 * 16 14 13 34 34 H 1.09006 * 110.73698 * 153.47988 * 20 17 16 35 35 H 1.09003 * 110.73588 * 276.61767 * 20 17 16 36 36 H 1.08994 * 109.47218 * 179.97438 * 24 23 21 37 37 H 1.08996 * 109.47082 * 299.99973 * 24 23 21 38 38 H 1.09002 * 109.46965 * 60.00167 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6160 1.9779 0.8495 5 6 3.5434 1.4438 0.1051 6 1 4.1389 1.8918 -0.6766 7 6 4.1585 0.8731 1.1992 8 7 5.4704 0.8738 1.2906 9 14 3.1283 0.0977 2.5508 10 1 2.9036 -1.3371 2.2406 11 1 3.8419 0.2178 3.8476 12 1 1.8206 0.7957 2.6387 13 7 1.6359 2.1047 -1.2474 14 6 1.5012 3.5547 -1.0539 15 1 1.1781 3.7436 -0.0302 16 6 2.8753 4.2187 -1.2754 17 16 2.4369 5.8359 -2.0314 18 8 1.9756 6.7282 -1.0263 19 8 3.4590 6.2391 -2.9325 20 6 1.0075 5.1634 -2.9713 21 6 0.4428 4.0916 -2.0171 22 1 -0.3720 4.5272 -1.4386 23 8 -0.0716 3.0063 -2.7913 24 6 -1.4575 3.1302 -3.1170 25 1 -0.3633 -1.0248 -0.0764 26 1 -0.3633 0.4463 0.9257 27 1 -0.3632 0.5785 -0.8493 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 5.9031 0.4719 2.0602 31 1 2.2836 1.8982 -1.9929 32 1 3.4846 3.6262 -1.9578 33 1 3.3912 4.3636 -0.3263 34 1 0.2678 5.9419 -3.1582 35 1 1.3382 4.7144 -3.9079 36 1 -1.7709 2.2679 -3.7054 37 1 -2.0436 3.1767 -2.1992 38 1 -1.6149 4.0407 -3.6952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653824993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:35 Heat of formation + Delta-G solvation = -95.620988 kcal Electronic energy + Delta-G solvation = -21173.411503 eV Core-core repulsion = 17951.257581 eV Total energy + Delta-G solvation = -3222.153922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.83941 -36.92571 -36.54635 -35.88113 -34.02019 -32.04691 -30.81334 -28.49043 -27.09313 -26.39449 -24.30840 -22.51673 -20.40950 -20.06602 -18.80418 -17.09536 -16.83061 -16.72536 -15.94029 -15.59167 -15.24302 -14.95773 -14.66459 -14.08535 -13.81879 -13.31965 -13.19865 -12.95344 -12.76597 -12.41664 -12.06371 -11.93563 -11.88170 -11.79935 -11.66850 -11.38040 -11.24729 -10.84896 -10.74745 -10.67562 -10.30478 -10.24456 -9.81106 -9.53650 -9.42373 -9.24800 -8.63737 -7.47281 -6.19317 -4.21041 0.16850 2.58074 3.21459 3.32315 3.33814 3.69933 3.75116 4.07212 4.31085 4.41537 4.67041 4.75251 5.04376 5.11537 5.16452 5.29379 5.39835 5.49892 5.51349 5.70820 5.73510 5.92524 6.01983 6.06229 6.23310 6.28796 6.63465 6.69284 6.93581 7.02193 7.18194 7.27199 7.47377 7.88666 8.26396 8.39072 8.82340 9.43889 10.92890 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.007285 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.945979 B = 3842.378895 C = 4976.615321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.180 3.820 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.643 5.643 14 C 0.097 3.903 15 H 0.101 0.899 16 C -0.576 4.576 17 S 2.368 3.632 18 O -0.938 6.938 19 O -0.943 6.943 20 C -0.612 4.612 21 C 0.104 3.896 22 H 0.078 0.922 23 O -0.335 6.335 24 C 0.027 3.973 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.344 0.656 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.241 5.527 -7.021 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.071 3.929 4 H 0.050 0.950 5 C -0.587 4.587 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.273 5.273 14 C -0.017 4.017 15 H 0.119 0.881 16 C -0.709 4.709 17 S 2.552 3.448 18 O -0.935 6.935 19 O -0.940 6.940 20 C -0.741 4.741 21 C 0.043 3.957 22 H 0.096 0.904 23 O -0.252 6.252 24 C -0.070 4.070 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.259 6.135 -6.820 15.312 hybrid contribution 0.061 -0.824 0.839 1.177 sum -12.198 5.311 -5.982 14.587 Atomic orbital electron populations 1.21755 0.97572 0.99534 1.01387 1.21791 0.93885 0.99143 1.00395 1.19739 0.94447 0.90903 0.87803 0.94956 1.21773 0.90271 1.39117 1.07570 0.90426 1.25009 0.94723 0.95255 0.97983 1.69904 1.08429 1.44662 1.30235 0.86837 0.80431 0.79966 0.80867 1.20526 1.22686 1.19004 1.60558 1.54303 1.03434 1.09010 1.21856 0.88632 0.92431 0.98753 0.88133 1.31119 1.06656 1.18644 1.14502 1.09650 0.78058 0.79553 0.77516 1.93611 1.81454 1.61313 1.57114 1.93593 1.54331 1.81776 1.64300 1.31022 1.20063 1.10168 1.12884 1.22396 0.97093 0.86176 0.89988 0.90418 1.88164 1.23208 1.42606 1.71218 1.22807 0.83434 1.01303 0.99486 0.94969 0.94553 0.91255 0.92294 0.93838 0.92567 0.83675 0.83958 0.83437 0.85289 0.83688 0.89750 0.94161 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.85 37.16 0.37 -2.14 16 2 C -0.11 -2.33 5.11 -26.73 -0.14 -2.47 16 3 C 0.18 3.79 1.58 -68.86 -0.11 3.68 16 4 H 0.03 0.71 6.38 -51.93 -0.33 0.38 16 5 C -0.55 -13.78 8.41 -34.44 -0.29 -14.07 16 6 H 0.08 2.06 7.06 -52.49 -0.37 1.69 16 7 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 8 N -0.90 -26.05 13.96 55.43 0.77 -25.28 16 9 Si 0.89 21.13 24.41 -169.99 -4.15 16.98 16 10 H -0.28 -6.54 6.84 56.52 0.39 -6.16 16 11 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16 13 N -0.64 -11.22 4.21 -100.37 -0.42 -11.64 16 14 C 0.10 1.45 2.99 -67.16 -0.20 1.25 16 15 H 0.10 1.53 7.29 -51.93 -0.38 1.15 16 16 C -0.58 -8.43 5.75 37.79 0.22 -8.21 16 17 S 2.37 31.09 6.08 -107.50 -0.65 30.44 16 18 O -0.94 -14.88 18.17 -57.66 -1.05 -15.93 16 19 O -0.94 -15.46 18.17 -57.66 -1.05 -16.51 16 20 C -0.61 -6.31 7.06 37.79 0.27 -6.05 16 21 C 0.10 1.27 3.11 -26.18 -0.08 1.19 16 22 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 23 O -0.34 -4.38 9.06 -35.23 -0.32 -4.70 16 24 C 0.03 0.27 10.80 101.05 1.09 1.36 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.15 7.61 -51.93 -0.40 0.76 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.96 3.22 -51.93 -0.17 0.79 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.34 6.10 7.69 -39.29 -0.30 5.80 16 32 H 0.14 2.09 7.14 -51.93 -0.37 1.72 16 33 H 0.15 2.33 8.14 -51.93 -0.42 1.90 16 34 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.14 1.39 8.08 -51.93 -0.42 0.97 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -32.94 310.17 -6.86 -39.80 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.70 Total: 5.74 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 1.03 Total: -23.57 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.35 Total: -36.92 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -2.41 Total: -37.13 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.15 Total: 16.98 kcal Atomic # 16 Polarization: 31.09 SS G_CDS: -0.65 Total: 30.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.94 -6.86 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653824993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.820 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds