Wall clock time and date at job start Mon Mar 30 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.46851 * 2 1 4 4 H 1.09001 * 109.47582 * 55.75807 * 3 2 1 5 5 C 1.50703 * 109.46780 * 175.75790 * 3 2 1 6 6 H 1.07998 * 119.99664 * 119.99941 * 5 3 2 7 7 C 1.37876 * 120.00058 * 299.99677 * 5 3 2 8 8 N 1.31510 * 119.99998 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99790 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47271 * 89.99927 * 9 7 5 11 11 H 1.48503 * 109.47057 * 209.99264 * 9 7 5 12 12 H 1.48492 * 109.47202 * 329.99903 * 9 7 5 13 13 N 1.46898 * 109.47120 * 295.75329 * 3 2 1 14 14 C 1.46900 * 110.99931 * 152.47806 * 13 3 2 15 15 H 1.09000 * 108.77985 * 328.45352 * 14 13 3 16 16 C 1.54213 * 108.92620 * 87.05733 * 14 13 3 17 17 S 1.83821 * 103.02298 * 145.87935 * 16 14 13 18 18 O 1.42105 * 109.81001 * 77.60011 * 17 16 14 19 19 O 1.42103 * 109.81099 * 211.94232 * 17 16 14 20 20 C 1.83813 * 94.23765 * 324.77042 * 17 16 14 21 21 C 1.52842 * 109.10159 * 209.64567 * 14 13 3 22 22 H 1.09001 * 108.87951 * 118.52903 * 21 14 13 23 23 O 1.42899 * 108.89967 * 0.05325 * 21 14 13 24 24 C 1.42898 * 114.00119 * 145.68745 * 23 21 14 25 25 H 1.08998 * 109.46765 * 175.73819 * 1 2 3 26 26 H 1.08997 * 109.46979 * 295.73971 * 1 2 3 27 27 H 1.08996 * 109.46692 * 55.73807 * 1 2 3 28 28 H 1.08996 * 109.47031 * 239.99868 * 2 1 3 29 29 H 1.08994 * 109.46846 * 120.00093 * 2 1 3 30 30 H 0.97001 * 119.99973 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00798 * 276.43165 * 13 3 2 32 32 H 1.08996 * 110.73326 * 27.44440 * 16 14 13 33 33 H 1.09000 * 110.73088 * 264.31173 * 16 14 13 34 34 H 1.09006 * 110.73698 * 153.47988 * 20 17 16 35 35 H 1.09003 * 110.73588 * 276.61767 * 20 17 16 36 36 H 1.08994 * 109.47218 * 179.97438 * 24 23 21 37 37 H 1.08996 * 109.47082 * 299.99973 * 24 23 21 38 38 H 1.09002 * 109.46965 * 60.00167 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6160 1.9779 0.8495 5 6 3.5434 1.4438 0.1051 6 1 4.1389 1.8918 -0.6766 7 6 4.1585 0.8731 1.1992 8 7 5.4704 0.8738 1.2906 9 14 3.1283 0.0977 2.5508 10 1 2.9036 -1.3371 2.2406 11 1 3.8419 0.2178 3.8476 12 1 1.8206 0.7957 2.6387 13 7 1.6359 2.1047 -1.2474 14 6 1.5012 3.5547 -1.0539 15 1 1.1781 3.7436 -0.0302 16 6 2.8753 4.2187 -1.2754 17 16 2.4369 5.8359 -2.0314 18 8 1.9756 6.7282 -1.0263 19 8 3.4590 6.2391 -2.9325 20 6 1.0075 5.1634 -2.9713 21 6 0.4428 4.0916 -2.0171 22 1 -0.3720 4.5272 -1.4386 23 8 -0.0716 3.0063 -2.7913 24 6 -1.4575 3.1302 -3.1170 25 1 -0.3633 -1.0248 -0.0764 26 1 -0.3633 0.4463 0.9257 27 1 -0.3632 0.5785 -0.8493 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 5.9031 0.4719 2.0602 31 1 2.2836 1.8982 -1.9929 32 1 3.4846 3.6262 -1.9578 33 1 3.3912 4.3636 -0.3263 34 1 0.2678 5.9419 -3.1582 35 1 1.3382 4.7144 -3.9079 36 1 -1.7709 2.2679 -3.7054 37 1 -2.0436 3.1767 -2.1992 38 1 -1.6149 4.0407 -3.6952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653824993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:35 Heat of formation + Delta-G solvation = -122.928940 kcal Electronic energy + Delta-G solvation = -21174.595665 eV Core-core repulsion = 17951.257581 eV Total energy + Delta-G solvation = -3223.338084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93736 -38.12870 -37.89912 -37.09287 -35.37448 -33.98385 -32.01225 -29.75310 -28.57750 -27.39958 -25.42537 -24.18951 -21.72039 -21.52534 -19.92706 -18.94208 -17.94446 -17.83231 -17.07246 -16.97793 -16.61775 -16.12949 -15.67168 -15.63168 -15.03923 -14.77761 -14.59165 -14.25429 -14.02139 -13.67997 -13.46803 -13.28337 -13.22797 -13.15529 -13.02217 -12.75581 -12.46704 -12.45097 -12.08339 -11.81121 -11.70707 -11.51231 -11.41032 -11.19377 -11.08376 -10.65219 -10.35763 -8.97955 -8.28656 -6.31777 -0.92630 1.31273 1.36193 1.45267 1.51397 2.32149 2.62384 2.81561 2.99359 3.07412 3.29094 3.59996 3.78635 4.01946 4.08573 4.16911 4.45021 4.49783 4.54620 4.71855 4.73080 4.75722 4.76561 4.83496 5.02596 5.06748 5.09584 5.21694 5.37109 5.51202 5.54966 5.71838 6.10818 6.34967 6.49564 6.71300 6.86771 7.37062 8.86564 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.007285 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.945979 B = 3842.378895 C = 4976.615321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.185 3.815 4 H 0.029 0.971 5 C -0.535 4.535 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.308 1.308 12 H -0.245 1.245 13 N -0.632 5.632 14 C 0.088 3.912 15 H 0.097 0.903 16 C -0.589 4.589 17 S 2.394 3.606 18 O -0.964 6.964 19 O -0.977 6.977 20 C -0.579 4.579 21 C 0.105 3.895 22 H 0.103 0.897 23 O -0.356 6.356 24 C 0.019 3.981 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.341 0.659 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.681 5.844 -8.055 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.075 3.925 4 H 0.047 0.953 5 C -0.574 4.574 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.236 1.236 12 H -0.169 1.169 13 N -0.261 5.261 14 C -0.025 4.025 15 H 0.115 0.885 16 C -0.721 4.721 17 S 2.580 3.420 18 O -0.961 6.961 19 O -0.974 6.974 20 C -0.711 4.711 21 C 0.044 3.956 22 H 0.121 0.879 23 O -0.274 6.274 24 C -0.078 4.078 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.186 0.814 35 H 0.179 0.821 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.703 6.462 -7.846 18.706 hybrid contribution 1.098 -0.879 1.035 1.747 sum -14.604 5.583 -6.811 17.054 Atomic orbital electron populations 1.21650 0.94588 1.01010 1.01949 1.21742 0.96524 0.97835 0.99363 1.19602 0.91352 0.92137 0.89441 0.95337 1.22170 0.92690 1.36594 1.05942 0.93161 1.25788 0.95496 0.96447 1.00587 1.70053 1.10315 1.47133 1.31240 0.85949 0.79654 0.79559 0.77741 1.19924 1.23625 1.16894 1.60562 1.53401 1.05101 1.07028 1.22066 0.89447 0.90947 1.00022 0.88521 1.31078 1.06641 1.20719 1.13657 1.08777 0.78410 0.78030 0.76761 1.93571 1.81886 1.61977 1.58667 1.93547 1.56998 1.82102 1.64749 1.30862 1.17925 1.10216 1.12139 1.22333 0.96654 0.86446 0.90131 0.87871 1.88138 1.25102 1.42867 1.71265 1.23017 0.81730 1.02760 1.00255 0.93121 0.94190 0.90395 0.92833 0.95427 0.92909 0.84010 0.84717 0.85699 0.81356 0.82096 0.89063 0.93530 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.85 71.99 0.71 -3.52 16 2 C -0.12 -4.58 5.11 30.60 0.16 -4.43 16 3 C 0.18 7.66 1.58 44.17 0.07 7.73 16 4 H 0.03 1.23 6.38 -2.39 -0.02 1.21 16 5 C -0.53 -27.56 8.41 25.60 0.22 -27.34 16 6 H 0.05 2.80 7.06 -2.91 -0.02 2.78 16 7 C 0.01 0.82 5.45 84.66 0.46 1.28 16 8 N -0.95 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.94 43.91 24.41 68.60 1.67 45.58 16 10 H -0.27 -12.35 6.84 99.48 0.68 -11.67 16 11 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.25 -10.49 6.53 99.48 0.65 -9.84 16 13 N -0.63 -21.37 4.21 -471.47 -1.98 -23.35 16 14 C 0.09 2.53 2.99 45.27 0.14 2.67 16 15 H 0.10 2.83 7.29 -2.39 -0.02 2.81 16 16 C -0.59 -17.61 5.75 72.39 0.42 -17.20 16 17 S 2.39 60.30 6.08 -56.49 -0.34 59.95 16 18 O -0.96 -29.53 18.17 -127.53 -2.32 -31.85 16 19 O -0.98 -31.60 18.17 -127.53 -2.32 -33.92 16 20 C -0.58 -9.59 7.06 72.39 0.51 -9.08 16 21 C 0.11 2.19 3.11 30.95 0.10 2.29 16 22 H 0.10 1.69 7.71 -2.39 -0.02 1.68 16 23 O -0.36 -7.95 9.06 -148.98 -1.35 -9.30 16 24 C 0.02 0.29 10.80 113.37 1.22 1.51 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 2.31 7.61 -2.39 -0.02 2.29 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.03 1.17 3.22 -2.39 -0.01 1.17 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.34 12.01 7.69 -89.70 -0.69 11.32 16 32 H 0.13 4.17 7.14 -2.39 -0.02 4.15 16 33 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 34 H 0.17 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.16 2.36 8.08 -2.39 -0.02 2.34 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 0.66 8.08 -2.39 -0.02 0.64 16 38 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -72.29 310.17 -2.05 -74.34 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.29 Total: 21.72 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.99 Total: -46.08 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.68 Total: -80.45 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: -5.98 Total: -75.06 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.67 Total: 45.58 kcal Atomic # 16 Polarization: 60.30 SS G_CDS: -0.34 Total: 59.95 kcal Total: -72.29 -2.05 -74.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653824993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.589 kcal (2) G-P(sol) polarization free energy of solvation -72.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds