Wall clock time and date at job start Mon Mar 30 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 S 1.81401 * 109.47024 * 119.99851 * 2 1 3 5 5 O 1.42096 * 108.58105 * 70.51415 * 4 2 1 6 6 O 1.42104 * 108.57631 * 299.48470 * 4 2 1 7 7 C 1.81408 * 101.92100 * 185.00210 * 4 2 1 8 8 C 1.52994 * 109.47029 * 179.97438 * 7 4 2 9 9 N 1.46904 * 109.47076 * 179.97438 * 8 7 4 10 10 C 1.47960 * 110.99975 * 190.00073 * 9 8 7 11 11 C 1.53940 * 86.18020 * 222.41827 * 10 9 8 12 12 O 1.42900 * 113.73337 * 269.26005 * 11 10 9 13 13 C 1.50694 * 113.73364 * 138.08016 * 11 10 9 14 14 H 1.08000 * 120.00563 * 1.89939 * 13 11 10 15 15 C 1.37885 * 119.99902 * 181.90102 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.48189 * 111.06803 * 90.56485 * 9 8 7 22 22 H 1.09000 * 109.47368 * 299.99860 * 1 2 3 23 23 H 1.08998 * 109.47402 * 60.00713 * 1 2 3 24 24 H 1.09004 * 109.47038 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47082 * 239.99429 * 2 1 3 26 26 H 1.08998 * 109.46972 * 299.99821 * 3 2 1 27 27 H 1.08997 * 109.47657 * 59.99781 * 3 2 1 28 28 H 1.08997 * 109.47094 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.46999 * 59.99750 * 7 4 2 30 30 H 1.08995 * 109.46431 * 299.99825 * 7 4 2 31 31 H 1.09003 * 109.47110 * 59.99987 * 8 7 4 32 32 H 1.09005 * 109.47409 * 300.00116 * 8 7 4 33 33 H 1.09000 * 113.75922 * 108.10132 * 10 9 8 34 34 H 1.08996 * 113.85941 * 336.74802 * 10 9 8 35 35 H 0.96699 * 113.99865 * 178.10203 * 12 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 37 37 H 1.08996 * 113.76245 * 23.24297 * 21 9 8 38 38 H 1.08999 * 113.82580 * 251.80952 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.8619 -2.2431 1.3457 6 8 1.6604 -0.1635 2.6284 7 6 3.9266 -0.6030 1.3541 8 6 4.6209 -1.2689 2.5438 9 7 6.0721 -1.0653 2.4406 10 6 6.7951 -1.8900 3.4337 11 6 7.6724 -0.6479 3.6735 12 8 8.8329 -0.5940 2.8414 13 6 7.9794 -0.3937 5.1268 14 1 7.6167 -1.0746 5.8826 15 6 8.7233 0.7084 5.4917 16 7 9.1654 1.5374 4.5714 17 14 9.1032 1.0239 7.2932 18 1 9.9123 2.2628 7.4189 19 1 7.8334 1.1829 8.0465 20 1 9.8666 -0.1234 7.8465 21 6 6.4869 0.1750 3.1375 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1299 1.4425 -0.0005 29 1 4.1444 0.4649 1.3579 30 1 4.2906 -1.0449 0.4266 31 1 4.4030 -2.3369 2.5404 32 1 4.2566 -0.8267 3.4711 33 1 7.3343 -2.7308 2.9972 34 1 6.1906 -2.1736 4.2951 35 1 9.3714 0.1990 2.9685 36 1 9.6884 2.3129 4.8282 37 1 5.7907 0.4976 3.9115 38 1 6.7802 0.9809 2.4648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654252031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:04 Heat of formation + Delta-G solvation = -118.064549 kcal Electronic energy + Delta-G solvation = -20267.753606 eV Core-core repulsion = 17044.626458 eV Total energy + Delta-G solvation = -3223.127148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80646 -38.08837 -37.13139 -36.48837 -35.97715 -34.14853 -33.32061 -29.11654 -28.19143 -26.95509 -26.19872 -23.74462 -22.57064 -20.57196 -19.72107 -19.24241 -18.12187 -17.34407 -17.23844 -16.87357 -16.54585 -16.32205 -15.79624 -15.49390 -15.13496 -14.69276 -14.23786 -14.14709 -13.90833 -13.67943 -13.39001 -13.25421 -13.19574 -13.14862 -13.06439 -12.80608 -12.68924 -12.45773 -12.33193 -12.28340 -12.20047 -11.84149 -11.79643 -11.24970 -11.01917 -10.63980 -10.17921 -9.68435 -8.26216 -6.43916 -1.03020 1.42656 1.43673 1.51673 1.76984 2.36468 2.54859 2.94596 3.01552 3.11802 3.54634 3.60727 3.65005 3.81544 4.04846 4.17635 4.21031 4.28560 4.31153 4.44776 4.61215 4.62461 4.66269 4.70988 4.85549 4.87179 4.89257 5.11135 5.11950 5.22799 5.36889 5.38475 5.72618 5.97092 6.18244 6.60647 7.29089 7.49523 8.78600 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.004082 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.049661 B = 6858.205317 C = 6968.623451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.545 4.545 3 C -0.159 4.159 4 S 2.412 3.588 5 O -0.978 6.978 6 O -0.977 6.977 7 C -0.594 4.594 8 C 0.017 3.983 9 N -0.468 5.468 10 C 0.009 3.991 11 C 0.218 3.782 12 O -0.582 6.582 13 C -0.567 4.567 14 H 0.063 0.937 15 C 0.031 3.969 16 N -0.916 5.916 17 Si 0.964 3.036 18 H -0.278 1.278 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.007 4.007 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.169 0.831 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.383 0.617 36 H 0.274 0.726 37 H 0.060 0.940 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.369 0.641 -10.298 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.658 4.658 3 C -0.216 4.216 4 S 2.599 3.401 5 O -0.975 6.975 6 O -0.975 6.975 7 C -0.724 4.724 8 C -0.113 4.113 9 N -0.190 5.190 10 C -0.120 4.120 11 C 0.177 3.823 12 O -0.392 6.392 13 C -0.605 4.605 14 H 0.081 0.919 15 C -0.169 4.169 16 N -0.556 5.556 17 Si 0.789 3.211 18 H -0.203 1.203 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.136 4.136 22 H 0.087 0.913 23 H 0.126 0.874 24 H 0.090 0.910 25 H 0.186 0.814 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.861 -0.320 -10.562 18.234 hybrid contribution 0.767 1.183 1.451 2.023 sum -14.094 0.863 -9.111 16.805 Atomic orbital electron populations 1.21810 0.89466 1.04220 1.05713 1.29803 1.07221 1.09972 1.18815 1.21936 1.02766 0.91259 1.05684 1.08229 0.78129 0.75296 0.78480 1.93515 1.83939 1.32504 1.87540 1.93516 1.79274 1.75820 1.48840 1.30257 1.22308 1.11748 1.08044 1.22406 0.91834 1.01225 0.95808 1.68516 1.04799 1.04679 1.41056 1.24156 0.95777 0.97853 0.94165 1.20091 0.82991 0.91130 0.88093 1.86025 1.39415 1.48887 1.64904 1.21897 1.35409 1.10109 0.93074 0.91918 1.25759 0.94161 0.94767 1.02246 1.69485 1.36610 1.14659 1.34828 0.85514 0.78384 0.77645 0.79528 1.20331 1.19650 1.19788 1.24646 0.99357 0.93862 0.95764 0.91275 0.87386 0.90997 0.81371 0.87935 0.91143 0.89872 0.83718 0.82246 0.89413 0.93299 0.89985 0.90361 0.76427 0.91587 0.92170 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.54 -7.32 3.35 30.59 0.10 -7.22 16 3 C -0.16 -1.88 8.90 71.98 0.64 -1.24 16 4 S 2.41 56.17 4.26 -56.49 -0.24 55.93 16 5 O -0.98 -28.96 18.10 -127.37 -2.30 -31.27 16 6 O -0.98 -30.14 18.06 -127.37 -2.30 -32.44 16 7 C -0.59 -14.29 5.51 71.98 0.40 -13.89 16 8 C 0.02 0.57 4.81 86.30 0.41 0.98 16 9 N -0.47 -18.86 6.16 -910.15 -5.61 -24.47 16 10 C 0.01 0.40 7.34 86.41 0.63 1.03 16 11 C 0.22 11.03 1.40 -10.89 -0.02 11.01 16 12 O -0.58 -31.38 13.48 -148.98 -2.01 -33.39 16 13 C -0.57 -30.35 8.61 25.60 0.22 -30.13 16 14 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 15 C 0.03 1.62 5.40 84.66 0.46 2.08 16 16 N -0.92 -48.61 11.20 21.45 0.24 -48.37 16 17 Si 0.96 41.48 29.54 68.60 2.03 43.50 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C -0.01 -0.32 7.37 86.37 0.64 0.32 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.17 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.87 6.39 -2.39 -0.02 0.86 16 29 H 0.14 3.12 6.77 -2.39 -0.02 3.11 16 30 H 0.16 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 32 H 0.05 1.69 7.39 -2.38 -0.02 1.67 16 33 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.08 3.19 7.88 -2.39 -0.02 3.17 16 35 H 0.38 21.02 6.60 -74.06 -0.49 20.54 16 36 H 0.27 13.77 8.31 -92.71 -0.77 12.99 16 37 H 0.06 2.74 7.44 -2.39 -0.02 2.72 16 38 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -69.60 323.92 -5.49 -75.09 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.56 Total: 33.77 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 4.15 Total: -38.35 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -5.36 Total: -72.84 kcal Atomic # 8 Polarization: -90.48 SS G_CDS: -6.61 Total: -97.10 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 56.17 SS G_CDS: -0.24 Total: 55.93 kcal Total: -69.60 -5.49 -75.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654252031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.979 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds