Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46933 * 2 1 4 4 C 1.50698 * 109.47372 * 239.99468 * 2 1 3 5 5 H 1.07993 * 120.00231 * 236.90177 * 4 2 1 6 6 C 1.37881 * 119.99810 * 56.90113 * 4 2 1 7 7 N 1.31513 * 120.00137 * 5.74369 * 6 4 2 8 8 Si 1.86799 * 119.99911 * 185.74196 * 6 4 2 9 9 H 1.48498 * 109.46898 * 85.02258 * 8 6 4 10 10 H 1.48507 * 109.46891 * 205.02595 * 8 6 4 11 11 H 1.48504 * 109.46915 * 325.02006 * 8 6 4 12 12 C 1.53001 * 109.46654 * 119.99580 * 2 1 3 13 13 N 1.46498 * 109.47185 * 299.99653 * 12 2 1 14 14 S 1.65608 * 119.99784 * 165.27348 * 13 12 2 15 15 O 1.42098 * 104.27511 * 180.80019 * 14 13 12 16 16 O 1.42101 * 104.27938 * 308.65911 * 14 13 12 17 17 C 1.81402 * 104.44666 * 64.73282 * 14 13 12 18 18 H 1.09001 * 110.46008 * 62.38907 * 17 14 13 19 19 C 1.54509 * 110.50985 * 185.00138 * 17 14 13 20 20 C 1.54477 * 104.06482 * 118.64246 * 19 17 14 21 21 O 1.44428 * 104.80202 * 23.97682 * 20 19 17 22 22 C 1.44428 * 105.27567 * 319.48686 * 21 20 19 23 23 H 1.08997 * 109.47031 * 293.85613 * 1 2 3 24 24 H 1.08998 * 109.46729 * 53.85330 * 1 2 3 25 25 H 1.08996 * 109.46989 * 173.84932 * 1 2 3 26 26 H 1.09008 * 109.47011 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47425 * 299.99270 * 3 2 1 28 28 H 1.08997 * 109.47467 * 59.99833 * 3 2 1 29 29 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46968 * 180.02562 * 12 2 1 31 31 H 1.08997 * 109.47344 * 60.00390 * 12 2 1 32 32 H 0.96998 * 120.00633 * 345.00643 * 13 12 2 33 33 H 1.09006 * 110.50683 * 237.28883 * 19 17 14 34 34 H 1.08997 * 110.51128 * 359.85432 * 19 17 14 35 35 H 1.08999 * 110.37377 * 142.80621 * 20 19 17 36 36 H 1.08998 * 110.36981 * 265.03741 * 20 19 17 37 37 H 1.08995 * 110.37311 * 281.67957 * 22 21 20 38 38 H 1.09004 * 110.36991 * 159.34384 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6940 -1.5584 -1.1320 6 6 1.6475 -0.2780 -2.4817 7 7 0.9350 0.8203 -2.6075 8 14 2.1379 -1.2519 -3.9984 9 1 1.1532 -2.3394 -4.2281 10 1 2.1644 -0.3505 -5.1783 11 1 3.4863 -1.8399 -3.7944 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0304 2.4454 14 16 1.6317 -0.7752 3.9224 15 8 1.0628 0.1669 4.8212 16 8 1.0257 -2.0427 3.7091 17 6 3.4080 -0.9640 4.2383 18 1 3.8904 0.0117 4.2969 19 6 3.6446 -1.7639 5.5389 20 6 4.4155 -3.0188 5.0729 21 8 5.0492 -2.6245 3.8364 22 6 4.0640 -1.8303 3.1403 23 1 -0.3633 0.4156 0.9398 24 1 -0.3633 0.6062 -0.8299 25 1 -0.3633 -1.0217 -0.1101 26 1 3.1301 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 0.6645 1.1248 -3.4878 30 1 3.1300 -0.7208 1.2496 31 1 1.6767 -1.7488 1.2494 32 1 1.1850 0.8646 2.3729 33 1 4.2459 -1.1845 6.2396 34 1 2.6942 -2.0437 5.9934 35 1 5.1664 -3.2989 5.8116 36 1 3.7262 -3.8455 4.9012 37 1 3.3206 -2.4742 2.6703 38 1 4.5449 -1.1974 2.3944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664353432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -121.287668 kcal Electronic energy + Delta-G solvation = -21068.577094 eV Core-core repulsion = 17845.310181 eV Total energy + Delta-G solvation = -3223.266913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.43278 -37.14924 -36.80104 -35.82462 -33.31209 -32.55262 -30.61837 -29.43116 -25.72505 -25.59589 -24.62528 -23.37091 -22.07263 -19.21297 -18.93274 -17.77525 -16.99970 -16.84979 -15.80448 -15.67108 -15.39193 -14.89326 -14.80320 -14.10773 -13.74236 -13.52055 -13.12112 -12.72913 -12.30780 -12.16297 -11.97425 -11.93960 -11.80387 -11.68943 -11.53500 -11.47468 -11.12961 -10.93532 -10.70119 -10.52272 -10.35197 -10.20374 -10.03152 -9.66413 -9.36361 -8.89681 -8.77835 -8.38038 -6.03847 -4.13699 0.34487 2.91799 3.27783 3.34630 3.37056 3.58618 3.83876 4.06804 4.13533 4.37970 4.59810 4.72400 4.89440 4.98551 5.19297 5.23366 5.42182 5.49529 5.55470 5.59543 5.71592 6.09097 6.37607 6.42836 6.49538 6.72516 6.88977 6.97268 7.02650 7.31737 7.47096 7.57063 7.69234 7.99974 8.12070 8.36379 8.86290 9.52058 10.97941 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.005655 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.171802 B = 4950.124751 C = 5642.364608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.064 3.936 3 C -0.132 4.132 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.119 3.881 13 N -1.106 6.106 14 S 2.615 3.385 15 O -0.966 6.966 16 O -0.950 6.950 17 C -0.640 4.640 18 H 0.148 0.852 19 C -0.127 4.127 20 C 0.043 3.957 21 O -0.364 6.364 22 C 0.070 3.930 23 H 0.011 0.989 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.008 0.992 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.418 0.582 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -2.728 12.937 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.062 3.938 3 C -0.190 4.190 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.006 4.006 13 N -0.869 5.869 14 S 2.705 3.295 15 O -0.956 6.956 16 O -0.940 6.940 17 C -0.748 4.748 18 H 0.166 0.834 19 C -0.166 4.166 20 C -0.035 4.035 21 O -0.282 6.282 22 C -0.008 4.008 23 H 0.030 0.970 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.797 -3.113 13.271 14.451 hybrid contribution 0.566 0.179 -0.956 1.126 sum 5.363 -2.934 12.315 13.749 Atomic orbital electron populations 1.21794 0.97518 1.00265 0.99250 1.18256 0.93028 0.92565 0.89933 1.21867 0.98439 0.98459 1.00241 1.20984 1.29537 1.14535 0.90018 0.92376 1.24878 0.94942 0.94725 0.98811 1.69828 1.37639 1.21293 1.23325 0.86622 0.78980 0.79979 0.82461 1.20600 1.21377 1.19985 1.21859 0.97144 0.96361 0.85195 1.55508 1.77909 1.30811 1.22684 1.04878 0.76479 0.74563 0.73595 1.93574 1.74990 1.62364 1.64673 1.93601 1.71858 1.43765 1.84745 1.32162 1.28946 1.09388 1.04291 0.83407 1.22679 1.02159 0.96813 0.94956 1.23478 0.97127 0.95812 0.87042 1.89138 1.36996 1.70099 1.31940 1.23436 0.92411 0.92184 0.92739 0.96995 0.90186 0.95106 0.95418 0.89545 0.97320 0.92969 0.92848 0.91265 0.74551 0.88705 0.90402 0.88336 0.91153 0.90200 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.04 37.16 0.30 -2.68 16 2 C 0.06 1.42 0.51 -155.66 -0.08 1.34 16 3 C -0.13 -2.85 8.11 37.16 0.30 -2.54 16 4 C -0.51 -12.79 8.01 -34.44 -0.28 -13.06 16 5 H 0.06 1.43 7.75 -52.49 -0.41 1.02 16 6 C 0.07 1.75 5.13 -17.82 -0.09 1.66 16 7 N -0.88 -23.19 9.46 55.43 0.52 -22.67 16 8 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.12 2.19 3.56 -4.04 -0.01 2.18 16 13 N -1.11 -17.81 5.13 -10.61 -0.05 -17.86 16 14 S 2.62 38.87 4.80 -107.50 -0.52 38.36 16 15 O -0.97 -16.41 18.08 -57.54 -1.04 -17.45 16 16 O -0.95 -16.81 17.04 -57.54 -0.98 -17.79 16 17 C -0.64 -7.48 3.85 -25.16 -0.10 -7.58 16 18 H 0.15 1.44 8.14 -51.93 -0.42 1.02 16 19 C -0.13 -1.27 6.76 -25.16 -0.17 -1.44 16 20 C 0.04 0.44 7.63 37.93 0.29 0.73 16 21 O -0.36 -4.83 11.65 -35.23 -0.41 -5.24 16 22 C 0.07 0.89 5.44 37.94 0.21 1.10 16 23 H 0.01 0.23 7.04 -51.93 -0.37 -0.13 16 24 H 0.08 1.99 6.25 -51.93 -0.32 1.67 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.09 2.10 6.11 -51.93 -0.32 1.78 16 28 H 0.01 0.15 6.60 -51.93 -0.34 -0.19 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 30 H 0.05 0.87 5.75 -51.93 -0.30 0.57 16 31 H 0.07 1.31 7.54 -51.93 -0.39 0.91 16 32 H 0.42 6.59 6.45 -34.47 -0.22 6.36 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.71 7.67 -51.93 -0.40 0.32 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.07 6.54 -51.93 -0.34 0.73 16 38 H 0.11 1.37 6.94 -51.93 -0.36 1.01 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -30.38 305.86 -7.96 -38.34 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.44 Total: 4.81 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 0.37 Total: -20.30 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.47 Total: -40.53 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -2.43 Total: -40.48 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.52 Total: 38.36 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.38 -7.96 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664353432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.950 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds