Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46933 * 2 1 4 4 C 1.50698 * 109.47372 * 239.99468 * 2 1 3 5 5 H 1.07993 * 120.00231 * 236.90177 * 4 2 1 6 6 C 1.37881 * 119.99810 * 56.90113 * 4 2 1 7 7 N 1.31513 * 120.00137 * 5.74369 * 6 4 2 8 8 Si 1.86799 * 119.99911 * 185.74196 * 6 4 2 9 9 H 1.48498 * 109.46898 * 85.02258 * 8 6 4 10 10 H 1.48507 * 109.46891 * 205.02595 * 8 6 4 11 11 H 1.48504 * 109.46915 * 325.02006 * 8 6 4 12 12 C 1.53001 * 109.46654 * 119.99580 * 2 1 3 13 13 N 1.46498 * 109.47185 * 299.99653 * 12 2 1 14 14 S 1.65608 * 119.99784 * 165.27348 * 13 12 2 15 15 O 1.42098 * 104.27511 * 180.80019 * 14 13 12 16 16 O 1.42101 * 104.27938 * 308.65911 * 14 13 12 17 17 C 1.81402 * 104.44666 * 64.73282 * 14 13 12 18 18 H 1.09001 * 110.46008 * 62.38907 * 17 14 13 19 19 C 1.54509 * 110.50985 * 185.00138 * 17 14 13 20 20 C 1.54477 * 104.06482 * 118.64246 * 19 17 14 21 21 O 1.44428 * 104.80202 * 23.97682 * 20 19 17 22 22 C 1.44428 * 105.27567 * 319.48686 * 21 20 19 23 23 H 1.08997 * 109.47031 * 293.85613 * 1 2 3 24 24 H 1.08998 * 109.46729 * 53.85330 * 1 2 3 25 25 H 1.08996 * 109.46989 * 173.84932 * 1 2 3 26 26 H 1.09008 * 109.47011 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47425 * 299.99270 * 3 2 1 28 28 H 1.08997 * 109.47467 * 59.99833 * 3 2 1 29 29 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46968 * 180.02562 * 12 2 1 31 31 H 1.08997 * 109.47344 * 60.00390 * 12 2 1 32 32 H 0.96998 * 120.00633 * 345.00643 * 13 12 2 33 33 H 1.09006 * 110.50683 * 237.28883 * 19 17 14 34 34 H 1.08997 * 110.51128 * 359.85432 * 19 17 14 35 35 H 1.08999 * 110.37377 * 142.80621 * 20 19 17 36 36 H 1.08998 * 110.36981 * 265.03741 * 20 19 17 37 37 H 1.08995 * 110.37311 * 281.67957 * 22 21 20 38 38 H 1.09004 * 110.36991 * 159.34384 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6940 -1.5584 -1.1320 6 6 1.6475 -0.2780 -2.4817 7 7 0.9350 0.8203 -2.6075 8 14 2.1379 -1.2519 -3.9984 9 1 1.1532 -2.3394 -4.2281 10 1 2.1644 -0.3505 -5.1783 11 1 3.4863 -1.8399 -3.7944 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0304 2.4454 14 16 1.6317 -0.7752 3.9224 15 8 1.0628 0.1669 4.8212 16 8 1.0257 -2.0427 3.7091 17 6 3.4080 -0.9640 4.2383 18 1 3.8904 0.0117 4.2969 19 6 3.6446 -1.7639 5.5389 20 6 4.4155 -3.0188 5.0729 21 8 5.0492 -2.6245 3.8364 22 6 4.0640 -1.8303 3.1403 23 1 -0.3633 0.4156 0.9398 24 1 -0.3633 0.6062 -0.8299 25 1 -0.3633 -1.0217 -0.1101 26 1 3.1301 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 0.6645 1.1248 -3.4878 30 1 3.1300 -0.7208 1.2496 31 1 1.6767 -1.7488 1.2494 32 1 1.1850 0.8646 2.3729 33 1 4.2459 -1.1845 6.2396 34 1 2.6942 -2.0437 5.9934 35 1 5.1664 -3.2989 5.8116 36 1 3.7262 -3.8455 4.9012 37 1 3.3206 -2.4742 2.6703 38 1 4.5449 -1.1974 2.3944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664353432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -144.013840 kcal Electronic energy + Delta-G solvation = -21069.562575 eV Core-core repulsion = 17845.310181 eV Total energy + Delta-G solvation = -3224.252394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34328 -38.66582 -38.17142 -37.10789 -34.95634 -33.46883 -32.35797 -30.31711 -27.50130 -27.37191 -26.27740 -24.30947 -22.97823 -20.73206 -20.33072 -18.96487 -18.21003 -17.83297 -17.58486 -16.87679 -16.53581 -16.38440 -15.90836 -15.50824 -15.05669 -14.82351 -14.60311 -14.01392 -13.65621 -13.40804 -13.35079 -13.25238 -13.15822 -13.05672 -12.85073 -12.72298 -12.51548 -12.48241 -12.35914 -12.23095 -12.06696 -11.54304 -11.36736 -11.09508 -10.90099 -10.65440 -10.36297 -10.16436 -7.97099 -6.11647 -0.82312 1.46317 1.49723 1.55667 1.71200 2.49382 2.59008 2.83684 3.09416 3.16072 3.27662 3.69362 3.84284 4.00757 4.12753 4.20796 4.44568 4.53535 4.61737 4.64979 4.75820 4.79550 4.83341 4.89181 5.11434 5.13935 5.25125 5.28620 5.54705 5.60103 5.72899 5.74189 6.09819 6.19877 6.31198 6.48591 6.95688 7.55949 9.02295 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.005655 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.171802 B = 4950.124751 C = 5642.364608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.053 3.947 3 C -0.124 4.124 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 0.942 3.058 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.269 1.269 12 C 0.129 3.871 13 N -1.110 6.110 14 S 2.624 3.376 15 O -0.987 6.987 16 O -0.984 6.984 17 C -0.618 4.618 18 H 0.176 0.824 19 C -0.134 4.134 20 C 0.033 3.967 21 O -0.380 6.380 22 C 0.061 3.939 23 H 0.030 0.970 24 H 0.055 0.945 25 H 0.016 0.984 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.257 0.743 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.419 0.581 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -2.900 14.428 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 C -0.182 4.182 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.175 4.175 7 N -0.541 5.541 8 Si 0.769 3.231 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.193 1.193 12 C 0.004 3.996 13 N -0.871 5.871 14 S 2.719 3.281 15 O -0.978 6.978 16 O -0.975 6.975 17 C -0.729 4.729 18 H 0.194 0.806 19 C -0.173 4.173 20 C -0.043 4.043 21 O -0.298 6.298 22 C -0.016 4.016 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.256 0.744 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.357 -3.283 14.756 16.399 hybrid contribution 0.096 0.196 -1.346 1.363 sum 6.452 -3.086 13.410 15.199 Atomic orbital electron populations 1.21698 0.98415 0.98933 0.99169 1.18307 0.92399 0.93270 0.90937 1.21715 0.98674 0.97859 0.99982 1.21368 1.29206 1.14511 0.91254 0.92388 1.25495 0.95353 0.95501 1.01102 1.69964 1.38541 1.22256 1.23380 0.85829 0.78740 0.78678 0.79863 1.20926 1.21550 1.19325 1.21591 0.98331 0.95388 0.84323 1.55396 1.78522 1.30620 1.22566 1.04459 0.77776 0.73263 0.72649 1.93547 1.76624 1.62815 1.64769 1.93557 1.74053 1.44909 1.84937 1.31932 1.24645 1.11204 1.05142 0.80626 1.22894 1.03115 0.96798 0.94492 1.23745 0.98044 0.95916 0.86641 1.89127 1.37363 1.70231 1.33111 1.23500 0.92436 0.92412 0.93292 0.95114 0.92652 0.96459 0.94844 0.92590 0.94774 0.93371 0.90585 0.92228 0.74436 0.85876 0.89741 0.85562 0.91256 0.91281 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.04 71.98 0.58 -5.13 16 2 C 0.05 2.31 0.51 -52.93 -0.03 2.28 16 3 C -0.12 -5.24 8.11 71.98 0.58 -4.66 16 4 C -0.52 -26.10 8.01 25.60 0.20 -25.90 16 5 H 0.06 2.81 7.75 -2.91 -0.02 2.79 16 6 C 0.03 1.29 5.13 84.66 0.43 1.72 16 7 N -0.90 -48.11 9.46 21.45 0.20 -47.90 16 8 Si 0.94 41.55 29.54 68.60 2.03 43.57 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.13 4.58 3.56 86.38 0.31 4.89 16 13 N -1.11 -34.04 5.13 -187.49 -0.96 -35.00 16 14 S 2.62 73.81 4.80 -56.49 -0.27 73.54 16 15 O -0.99 -31.94 18.08 -127.65 -2.31 -34.25 16 16 O -0.98 -34.23 17.04 -127.65 -2.18 -36.40 16 17 C -0.62 -12.55 3.85 31.61 0.12 -12.43 16 18 H 0.18 2.66 8.14 -2.39 -0.02 2.64 16 19 C -0.13 -2.22 6.76 31.61 0.21 -2.01 16 20 C 0.03 0.59 7.63 72.48 0.55 1.14 16 21 O -0.38 -9.10 11.65 -148.98 -1.74 -10.84 16 22 C 0.06 1.43 5.44 72.49 0.39 1.82 16 23 H 0.03 1.24 7.04 -2.39 -0.02 1.22 16 24 H 0.05 2.80 6.25 -2.39 -0.01 2.79 16 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.06 2.72 6.11 -2.38 -0.01 2.71 16 28 H 0.03 1.22 6.60 -2.39 -0.02 1.20 16 29 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.08 2.34 5.75 -2.38 -0.01 2.32 16 31 H 0.06 2.22 7.54 -2.39 -0.02 2.20 16 32 H 0.42 12.53 6.45 -96.75 -0.62 11.90 16 33 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 35 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.76 6.54 -2.39 -0.02 1.74 16 38 H 0.12 2.61 6.94 -2.39 -0.02 2.59 16 Total: -1.00 -64.68 305.86 -1.42 -66.09 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.44 Total: 19.45 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 3.37 Total: -38.26 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -0.76 Total: -82.91 kcal Atomic # 8 Polarization: -75.27 SS G_CDS: -6.22 Total: -81.49 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 73.81 SS G_CDS: -0.27 Total: 73.54 kcal Total: -64.68 -1.42 -66.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664353432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.921 kcal (2) G-P(sol) polarization free energy of solvation -64.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds