Wall clock time and date at job start Mon Mar 30 2020 01:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47666 * 321.85192 * 3 2 1 5 5 C 1.36942 * 120.00052 * 264.22269 * 4 3 2 6 6 H 1.08000 * 119.99845 * 201.84888 * 5 4 3 7 7 C 1.38809 * 119.99912 * 21.85432 * 5 4 3 8 8 N 1.31620 * 120.00156 * 7.70893 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 187.71434 * 7 5 4 10 10 H 1.48504 * 109.47343 * 89.99286 * 9 7 5 11 11 H 1.48501 * 109.47357 * 209.99495 * 9 7 5 12 12 H 1.48505 * 109.47189 * 329.99581 * 9 7 5 13 13 C 1.46507 * 120.00113 * 84.21729 * 4 3 2 14 14 C 1.50702 * 109.47286 * 270.00352 * 13 4 3 15 15 C 1.32597 * 119.99652 * 125.92348 * 14 13 4 16 16 C 1.47759 * 120.00415 * 6.69696 * 15 14 13 17 17 C 1.39555 * 120.12902 * 39.73131 * 16 15 14 18 18 C 1.37902 * 119.90248 * 180.02562 * 17 16 15 19 19 C 1.38607 * 120.17588 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.87066 * 180.02562 * 19 18 17 21 21 C 1.38501 * 120.25906 * 359.97438 * 19 18 17 22 22 C 1.38186 * 120.09558 * 359.97438 * 21 19 18 23 23 F 1.35098 * 120.09220 * 180.02562 * 22 21 19 24 24 H 4.40634 * 5.51367 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.46897 * 201.84835 * 3 2 1 26 26 H 1.08997 * 109.46817 * 81.85524 * 3 2 1 27 27 H 0.96996 * 120.00134 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47153 * 150.00217 * 13 4 3 29 29 H 1.09002 * 109.46732 * 30.00410 * 13 4 3 30 30 H 1.08002 * 120.00031 * 305.92667 * 14 13 4 31 31 H 1.08004 * 119.99497 * 186.69598 * 15 14 13 32 32 H 1.07993 * 120.04179 * 0.04671 * 17 16 15 33 33 H 1.08004 * 119.91126 * 179.97438 * 18 17 16 34 34 H 1.08007 * 119.95080 * 179.72429 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.0852 0.8531 5 6 3.4757 -0.8326 2.1552 6 1 4.1464 -1.4992 2.6769 7 6 2.9590 0.2802 2.8044 8 7 2.0274 1.0069 2.2245 9 14 3.5859 0.7464 4.5011 10 1 4.7407 1.6702 4.3657 11 1 2.5017 1.4175 5.2624 12 1 4.0138 -0.4780 5.2244 13 6 3.2593 -2.4415 0.3133 14 6 1.9693 -3.1894 0.5319 15 6 1.3537 -3.7629 -0.4930 16 6 2.0030 -3.7970 -1.8199 17 6 3.3740 -4.0361 -1.9229 18 6 3.9753 -4.0664 -3.1636 19 6 3.2216 -3.8596 -4.3083 20 9 3.8168 -3.8912 -5.5207 21 6 1.8604 -3.6218 -4.2142 22 6 1.2465 -3.5900 -2.9766 23 9 -0.0814 -3.3585 -2.8849 24 1 -1.0497 -0.0002 0.0004 25 1 3.0089 0.9547 0.3824 26 1 3.0094 -0.1448 -1.0173 27 1 1.6666 1.7847 2.6780 28 1 4.0714 -2.9617 0.8213 29 1 3.4728 -2.3895 -0.7543 30 1 1.5463 -3.2583 1.5232 31 1 0.3776 -4.2050 -0.3579 32 1 3.9631 -4.1974 -1.0323 33 1 5.0364 -4.2510 -3.2435 34 1 1.2786 -3.4568 -5.1091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665809139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:14 Heat of formation + Delta-G solvation = 28.838946 kcal Electronic energy + Delta-G solvation = -20829.478407 eV Core-core repulsion = 17366.190006 eV Total energy + Delta-G solvation = -3463.288401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.98185 -49.95777 -40.16474 -38.07964 -35.50353 -33.40268 -32.73466 -31.82736 -30.26633 -28.08041 -27.42359 -24.51922 -23.78135 -22.99059 -20.29516 -19.30316 -19.08253 -18.30648 -18.12539 -17.14506 -16.95864 -16.74863 -16.44738 -16.27038 -15.76199 -15.58137 -15.44736 -14.92344 -14.55997 -14.49953 -13.94615 -13.48406 -13.34390 -13.16098 -12.94700 -12.73017 -12.53429 -12.41820 -12.22487 -11.94496 -11.76659 -10.95419 -10.87099 -10.47974 -10.21745 -9.97444 -9.11934 -8.89753 -7.79170 -5.30357 -0.22219 0.04783 1.35888 1.50688 1.51968 1.58843 2.36124 2.48666 2.54725 2.64554 2.88736 3.35588 3.43366 3.66096 3.69399 3.88457 3.95369 4.10282 4.17813 4.37437 4.51679 4.73505 4.82988 4.90332 4.95039 4.97730 5.06834 5.12095 5.25406 5.40321 5.63932 5.66398 5.71168 5.79909 5.86018 6.34744 7.13018 7.39272 7.82808 8.25933 9.20299 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.004963 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.972612 B = 5640.637007 C = 6024.564982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.112 4.112 3 C 0.272 3.728 4 N -0.594 5.594 5 C -0.264 4.264 6 H 0.082 0.918 7 C -0.048 4.048 8 N -0.922 5.922 9 Si 0.968 3.032 10 H -0.285 1.285 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.154 3.846 14 C -0.120 4.120 15 C -0.154 4.154 16 C -0.088 4.088 17 C -0.057 4.057 18 C -0.149 4.149 19 C 0.115 3.885 20 F -0.135 7.135 21 C -0.191 4.191 22 C 0.112 3.888 23 F -0.140 7.140 24 H 0.212 0.788 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.245 0.755 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -10.739 -11.079 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.115 4.115 3 C 0.146 3.854 4 N -0.313 5.313 5 C -0.394 4.394 6 H 0.100 0.900 7 C -0.244 4.244 8 N -0.567 5.567 9 Si 0.797 3.203 10 H -0.212 1.212 11 H -0.231 1.231 12 H -0.195 1.195 13 C 0.029 3.971 14 C -0.141 4.141 15 C -0.173 4.173 16 C -0.089 4.089 17 C -0.075 4.075 18 C -0.168 4.168 19 C 0.096 3.904 20 F -0.113 7.113 21 C -0.210 4.210 22 C 0.092 3.908 23 F -0.119 7.119 24 H 0.229 0.771 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.141 -10.580 -11.037 15.608 hybrid contribution -1.008 0.696 1.064 1.623 sum 2.133 -9.884 -9.972 14.202 Atomic orbital electron populations 1.24822 0.96276 1.04739 1.07252 1.24611 0.95966 0.96425 0.94461 1.17789 0.82668 0.93298 0.91596 1.44352 1.74408 1.02955 1.09598 1.19631 1.21418 1.09150 0.89196 0.89981 1.25759 0.97441 0.99987 1.01188 1.70184 1.29201 1.18851 1.38487 0.85262 0.76701 0.78042 0.80318 1.21150 1.23107 1.19458 1.20797 0.93600 0.84106 0.98552 1.24176 0.99950 0.92612 0.97334 1.21246 0.99783 1.05310 0.91007 1.19260 0.94658 1.02688 0.92267 1.21387 0.92028 0.95400 0.98651 1.21405 1.02464 1.02813 0.90107 1.17405 0.90228 1.01936 0.80875 1.91516 1.83665 1.93892 1.42256 1.21033 0.94849 1.07227 0.97901 1.17588 0.77727 1.01778 0.93659 1.91480 1.31458 1.91897 1.97059 0.77088 0.90323 0.93141 0.94472 0.90726 0.90375 0.88999 0.86813 0.81957 0.81059 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.62 19.25 74.32 1.43 -13.19 16 2 C -0.11 -5.52 11.21 31.12 0.35 -5.18 16 3 C 0.27 12.92 5.44 84.57 0.46 13.38 16 4 N -0.59 -27.56 2.49 -716.92 -1.79 -29.35 16 5 C -0.26 -13.43 9.70 84.03 0.81 -12.61 16 6 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 7 C -0.05 -2.56 5.17 84.86 0.44 -2.12 16 8 N -0.92 -52.09 8.91 21.65 0.19 -51.89 16 9 Si 0.97 43.44 29.56 68.60 2.03 45.47 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 C 0.15 5.60 4.51 85.63 0.39 5.98 16 14 C -0.12 -4.33 9.48 24.53 0.23 -4.09 16 15 C -0.15 -4.96 9.44 23.63 0.22 -4.74 16 16 C -0.09 -2.49 5.15 -20.08 -0.10 -2.59 16 17 C -0.06 -1.29 7.28 22.51 0.16 -1.13 16 18 C -0.15 -2.93 10.01 22.28 0.22 -2.70 16 19 C 0.11 2.53 7.30 22.42 0.16 2.69 16 20 F -0.13 -2.93 17.26 44.97 0.78 -2.15 16 21 C -0.19 -4.53 9.99 22.32 0.22 -4.31 16 22 C 0.11 3.18 7.28 22.62 0.16 3.34 16 23 F -0.14 -4.42 16.82 44.97 0.76 -3.67 16 24 H 0.21 8.38 7.80 -4.43 -0.03 8.34 16 25 H 0.08 4.16 6.32 -2.39 -0.02 4.15 16 26 H 0.05 2.13 7.98 -2.39 -0.02 2.11 16 27 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 28 H 0.07 2.46 7.97 -2.39 -0.02 2.44 16 29 H 0.08 2.55 4.51 -2.39 -0.01 2.54 16 30 H 0.09 3.68 8.06 -2.91 -0.02 3.66 16 31 H 0.11 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.16 3.22 6.47 -2.91 -0.02 3.20 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -60.78 306.99 8.25 -52.53 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 1.12 Total: 16.34 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 5.17 Total: -27.28 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -1.59 Total: -81.24 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 1.53 Total: -5.82 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -60.78 8.25 -52.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665809139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.365 kcal (2) G-P(sol) polarization free energy of solvation -60.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds