Wall clock time and date at job start Mon Mar 30 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.48106 * 2 1 4 4 C 1.53087 * 109.48278 * 239.96055 * 2 1 3 5 5 C 1.53170 * 109.16495 * 182.40954 * 4 2 1 6 6 H 1.09005 * 109.61992 * 297.07305 * 5 4 2 7 7 C 1.53002 * 109.54586 * 176.85005 * 5 4 2 8 8 S 1.81404 * 109.47136 * 175.44557 * 7 5 4 9 9 O 1.42096 * 110.54000 * 291.62252 * 8 7 5 10 10 O 1.42102 * 110.54445 * 68.37523 * 8 7 5 11 11 N 1.65604 * 104.44475 * 179.97438 * 8 7 5 12 12 C 1.46498 * 120.00020 * 65.00576 * 11 8 7 13 13 C 1.50698 * 109.47296 * 164.99860 * 12 11 8 14 14 H 1.08003 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99904 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00355 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99706 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47108 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46711 * 119.99584 * 17 15 13 20 20 H 1.48498 * 109.47435 * 239.99755 * 17 15 13 21 21 C 1.53179 * 109.03756 * 56.98007 * 5 4 2 22 22 C 1.53090 * 109.16147 * 303.02332 * 21 5 4 23 23 O 1.42900 * 109.41858 * 57.60666 * 22 21 5 24 24 H 1.09001 * 109.46801 * 299.98118 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.97714 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.52431 * 302.31880 * 4 2 1 28 28 H 1.09007 * 109.51883 * 62.50272 * 4 2 1 29 29 H 1.09006 * 109.46955 * 295.44144 * 7 5 4 30 30 H 1.08994 * 109.46861 * 55.44223 * 7 5 4 31 31 H 0.96999 * 119.99851 * 244.99178 * 11 8 7 32 32 H 1.09009 * 109.46854 * 284.99384 * 12 11 8 33 33 H 1.08999 * 109.47638 * 44.99312 * 12 11 8 34 34 H 0.97000 * 120.00631 * 180.02562 * 16 15 13 35 35 H 1.08994 * 109.52258 * 183.11081 * 21 5 4 36 36 H 1.09001 * 109.57143 * 62.95968 * 21 5 4 37 37 H 1.08998 * 109.47781 * 297.62110 * 22 21 5 38 38 H 1.09001 * 109.48842 * 177.59738 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 3.5711 -0.7711 -1.2119 6 1 3.9703 0.2428 -1.2414 7 6 4.0878 -1.5598 -2.4169 8 16 5.9007 -1.5024 -2.4449 9 8 6.3534 -0.1872 -2.7357 10 8 6.4399 -2.2387 -1.3557 11 7 6.3214 -2.3847 -3.7816 12 6 5.9492 -1.9128 -5.1177 13 6 6.7422 -2.6651 -6.1551 14 1 7.4527 -3.4190 -5.8498 15 6 6.5606 -2.3908 -7.4941 16 7 5.6950 -1.4732 -7.8660 17 14 7.5440 -3.3228 -8.7801 18 1 8.4426 -4.2950 -8.1073 19 1 6.6153 -4.0502 -9.6821 20 1 8.3554 -2.3647 -9.5731 21 6 4.0176 -1.4601 0.0812 22 6 3.4307 -0.7091 1.2792 23 8 2.0065 -0.6740 1.1666 24 1 -0.3633 0.5136 0.8902 25 1 -0.3633 0.5142 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6444 -1.7376 -1.2706 28 1 1.7149 -0.1846 -2.1398 29 1 3.7583 -2.5961 -2.3412 30 1 3.6961 -1.1201 -3.3340 31 1 6.8144 -3.2138 -3.6800 32 1 4.8848 -2.0834 -5.2798 33 1 6.1629 -0.8471 -5.1993 34 1 5.5670 -1.2805 -8.8080 35 1 5.1058 -1.4498 0.1424 36 1 3.6622 -2.4905 0.0875 37 1 3.8192 0.3091 1.2958 38 1 3.7099 -1.2197 2.2009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668907045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:07 Heat of formation + Delta-G solvation = -143.177970 kcal Electronic energy + Delta-G solvation = -20239.864853 eV Core-core repulsion = 17015.648706 eV Total energy + Delta-G solvation = -3224.216148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72880 -36.62770 -35.52989 -35.06896 -34.65344 -32.94785 -32.18706 -29.10411 -27.14893 -26.77136 -23.61682 -22.54071 -21.92293 -20.37893 -18.78180 -17.52515 -16.61856 -16.43759 -16.01369 -15.75209 -15.49220 -15.05355 -14.73364 -14.46402 -14.10113 -13.51785 -13.08911 -12.75611 -12.70339 -12.49965 -12.28387 -12.20233 -12.03412 -11.79954 -11.67752 -11.50588 -11.30046 -11.21230 -11.04486 -10.98492 -10.74531 -10.50664 -10.23363 -10.11277 -9.57465 -9.45486 -8.91009 -8.24436 -6.22155 -4.26616 0.76176 3.22107 3.29434 3.32234 3.39927 3.60823 4.12741 4.31809 4.36271 4.48685 4.54575 4.71220 4.80911 5.00142 5.04814 5.14942 5.18427 5.26560 5.35332 5.40254 5.48678 5.54959 5.66134 5.68007 5.83719 5.88544 5.98048 5.99732 6.16026 6.39274 7.08216 7.19859 7.29469 7.75957 7.79007 8.14198 8.78108 9.38844 10.88417 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030725 B = 0.004134 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.085692 B = 6771.352920 C = 7373.035925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.060 0.940 4 C -0.137 4.137 5 C -0.077 4.077 6 H 0.084 0.916 7 C -0.630 4.630 8 S 2.608 3.392 9 O -0.961 6.961 10 O -0.977 6.977 11 N -1.108 6.108 12 C 0.242 3.758 13 C -0.529 4.529 14 H 0.066 0.934 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.181 4.181 22 C 0.064 3.936 23 O -0.381 6.381 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.410 0.590 32 H 0.020 0.980 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 1.489 14.130 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.078 0.922 4 C -0.176 4.176 5 C -0.097 4.097 6 H 0.103 0.897 7 C -0.758 4.758 8 S 2.700 3.300 9 O -0.951 6.951 10 O -0.967 6.967 11 N -0.869 5.869 12 C 0.118 3.882 13 C -0.569 4.569 14 H 0.085 0.915 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.218 4.218 22 C -0.012 4.012 23 O -0.301 6.301 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.243 0.757 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.572 2.105 14.654 17.107 hybrid contribution 0.222 -0.964 -1.454 1.759 sum -8.350 1.140 13.200 15.661 Atomic orbital electron populations 1.21764 0.92990 1.02980 1.02419 1.22146 0.95126 0.95146 0.85093 0.92244 1.22253 0.94119 1.02534 0.98675 1.20907 0.97496 0.99092 0.92205 0.89747 1.30728 1.29018 1.09536 1.06480 1.04828 0.77224 0.74664 0.73322 1.93581 1.77982 1.39395 1.84157 1.93522 1.76756 1.72676 1.53744 1.55478 1.70716 1.39252 1.21432 1.19108 0.95707 0.96266 0.77074 1.21239 1.23427 1.21613 0.90595 0.91541 1.24982 0.95402 0.95240 0.98619 1.69934 1.34482 1.31587 1.16961 0.86348 0.79816 0.79638 0.81074 1.19568 1.20828 1.20738 1.22708 1.03067 1.01405 0.94659 1.22541 0.80780 0.99670 0.98235 1.87912 1.21109 1.78063 1.42991 0.91897 0.90970 0.91776 0.90470 0.90234 0.85036 0.84536 0.75659 0.96196 0.94336 0.92474 0.88949 0.89804 0.92945 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.56 37.16 0.36 -0.86 16 2 C 0.08 0.85 3.26 -26.68 -0.09 0.76 16 3 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.14 -1.49 4.70 -26.60 -0.13 -1.61 16 5 C -0.08 -0.96 2.28 -90.44 -0.21 -1.17 16 6 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.63 -8.64 5.52 37.16 0.21 -8.44 16 8 S 2.61 45.98 5.11 -107.50 -0.55 45.43 16 9 O -0.96 -20.48 17.50 -57.54 -1.01 -21.49 16 10 O -0.98 -17.94 15.90 -57.54 -0.91 -18.86 16 11 N -1.11 -22.13 5.88 -11.66 -0.07 -22.20 16 12 C 0.24 5.89 5.89 -5.20 -0.03 5.86 16 13 C -0.53 -14.14 9.27 -34.44 -0.32 -14.46 16 14 H 0.07 1.71 7.65 -52.48 -0.40 1.31 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.18 -2.19 5.00 -26.59 -0.13 -2.32 16 22 C 0.06 0.69 6.84 37.20 0.25 0.94 16 23 O -0.38 -4.50 10.41 -35.23 -0.37 -4.87 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 30 H 0.14 1.84 8.14 -51.93 -0.42 1.42 16 31 H 0.41 7.63 8.50 -34.47 -0.29 7.34 16 32 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.04 1.03 7.70 -51.93 -0.40 0.63 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.09 1.20 5.84 -51.93 -0.30 0.90 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -32.31 320.57 -8.57 -40.89 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.03 Total: 4.80 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -0.18 Total: -19.74 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.67 Total: -46.65 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -2.29 Total: -45.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.55 Total: 45.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.31 -8.57 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668907045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.293 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds