Wall clock time and date at job start Mon Mar 30 2020 01:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21693 * 120.00014 * 0.28042 * 5 4 2 7 7 C 1.46373 * 120.00147 * 180.27610 * 5 4 2 8 8 H 1.08002 * 120.00141 * 0.02562 * 7 5 4 9 9 C 1.40050 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46768 * 60.00340 * 11 9 7 13 13 H 1.48504 * 109.47036 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47374 * 300.00617 * 11 9 7 15 15 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 16 16 H 1.08996 * 109.70321 * 299.41229 * 15 2 1 17 17 C 1.53474 * 109.70804 * 178.78626 * 15 2 1 18 18 O 1.43157 * 108.25363 * 180.59764 * 17 15 2 19 19 C 1.36112 * 116.71176 * 46.19362 * 18 17 15 20 20 C 1.38707 * 119.39632 * 162.95699 * 19 18 17 21 21 C 1.38192 * 120.06700 * 179.66983 * 20 19 18 22 22 C 1.38252 * 120.11228 * 359.97438 * 21 20 19 23 23 C 1.38193 * 120.11279 * 0.08385 * 22 21 20 24 24 C 1.38705 * 120.07006 * 359.96334 * 23 22 21 25 25 O 1.36108 * 119.40029 * 179.86579 * 24 23 22 26 26 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 27 27 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 29 29 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 30 30 H 0.96991 * 119.99824 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.70734 * 300.27078 * 17 15 2 32 32 H 1.09000 * 109.70825 * 60.89320 * 17 15 2 33 33 H 1.08000 * 119.96448 * 359.64994 * 20 19 18 34 34 H 1.08001 * 119.94133 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.94405 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.96690 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1417 -0.0196 -2.3585 6 8 1.8523 1.1612 -2.4131 7 6 2.6239 -0.7110 -3.5551 8 1 2.8805 -1.7590 -3.5068 9 6 2.7516 -0.0138 -4.7630 10 7 2.4408 1.2541 -4.8217 11 14 3.3677 -0.8961 -6.2900 12 1 2.4504 -2.0170 -6.6179 13 1 3.4124 0.0568 -7.4281 14 1 4.7304 -1.4294 -6.0377 15 6 2.0400 -0.7213 1.2493 16 1 1.6874 -0.2044 2.1417 17 6 3.5744 -0.7510 1.2396 18 8 4.0169 -1.4434 2.4119 19 6 3.3883 -2.6146 2.7046 20 6 3.9803 -3.5020 3.5911 21 6 3.3510 -4.6920 3.9035 22 6 2.1298 -5.0012 3.3339 23 6 1.5351 -4.1220 2.4489 24 6 2.1618 -2.9263 2.1303 25 8 1.5651 -2.0717 1.2550 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2490 -1.6318 -1.1527 30 1 2.5296 1.7369 -5.6582 31 1 3.9263 -1.2732 0.3498 32 1 3.9619 0.2678 1.2459 33 1 4.9342 -3.2628 4.0375 34 1 3.8136 -5.3813 4.5943 35 1 1.6402 -5.9318 3.5802 36 1 0.5813 -4.3661 2.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000242645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:47 Heat of formation + Delta-G solvation = -88.895836 kcal Electronic energy + Delta-G solvation = -21502.538535 eV Core-core repulsion = 18145.232286 eV Total energy + Delta-G solvation = -3357.306249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25037 -38.24658 -37.33696 -36.96038 -34.34707 -32.44205 -30.73872 -30.64053 -29.41843 -28.15527 -26.12854 -24.60475 -22.82623 -21.92354 -20.66514 -19.47629 -18.48504 -17.67524 -17.13622 -16.61341 -15.43256 -15.31870 -15.17235 -14.72235 -14.56313 -14.15766 -14.06036 -13.84107 -13.41002 -13.12798 -12.89572 -12.39140 -12.21500 -11.94815 -11.65074 -11.45959 -11.33241 -11.08992 -10.96946 -10.88384 -10.58507 -10.45583 -10.24729 -10.17511 -8.87920 -8.66490 -8.04452 -7.69309 -7.59081 -6.22331 -4.67948 1.26396 1.30407 3.08349 3.14362 3.19386 3.21221 3.28254 3.70716 4.07187 4.26901 4.54015 4.63452 4.71787 4.86200 4.94363 5.07191 5.18736 5.25247 5.38349 5.51792 5.62578 5.74980 5.84827 5.88820 6.01573 6.10145 6.17517 6.20681 6.40771 6.48769 6.61517 6.80746 7.00533 7.40372 7.48693 7.86591 8.01923 8.28547 8.99249 9.46629 10.55187 10.73247 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.004468 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.231885 B = 6265.222678 C = 6651.519817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 H 0.097 0.903 4 N -0.760 5.760 5 C 0.556 3.444 6 O -0.580 6.580 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.089 3.911 10 N -0.767 5.767 11 Si 0.907 3.093 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.049 3.951 16 H 0.087 0.913 17 C 0.028 3.972 18 O -0.311 6.311 19 C 0.050 3.950 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.117 4.117 24 C 0.058 3.942 25 O -0.295 6.295 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.383 0.617 30 H 0.269 0.731 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -9.446 15.080 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.115 0.885 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.463 6.463 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.131 4.131 10 N -0.396 5.396 11 Si 0.732 3.268 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.193 1.193 15 C -0.008 4.008 16 H 0.105 0.895 17 C -0.047 4.047 18 O -0.226 6.226 19 C 0.005 3.995 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.136 4.136 24 C 0.012 3.988 25 O -0.209 6.209 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.215 0.785 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.570 -8.305 14.875 17.046 hybrid contribution 0.386 -0.761 -0.817 1.182 sum 0.956 -9.066 14.058 16.755 Atomic orbital electron populations 1.22109 0.95732 1.01959 1.01688 1.20519 0.94396 0.96360 0.82934 0.88521 1.46228 1.73125 1.13115 1.09141 1.18207 0.77819 0.86382 0.81545 1.90601 1.54888 1.16382 1.84399 1.20842 1.47066 0.97116 0.93146 0.91534 1.25687 0.93268 0.94463 0.99688 1.70000 1.34980 1.08212 1.26395 0.86443 0.79902 0.79753 0.80720 1.19268 1.20536 1.19293 1.23625 0.94283 0.81562 1.01366 0.89484 1.23738 0.94507 0.99304 0.87165 1.86281 1.59048 1.32432 1.44794 1.19001 0.91563 0.88758 1.00183 1.20424 1.00696 0.92940 0.99575 1.20852 0.95842 0.96354 1.01096 1.20871 0.95959 0.99452 0.97540 1.20464 1.00789 0.92713 0.99584 1.19040 0.91570 0.93109 0.95033 1.86370 1.58847 1.19865 1.55844 0.91381 0.92409 0.93297 0.78459 0.92030 0.89434 0.85891 0.85112 0.85420 0.85375 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.34 37.16 0.35 -2.39 16 2 C 0.16 3.00 2.44 -67.93 -0.17 2.84 16 3 H 0.10 1.89 7.58 -51.93 -0.39 1.49 16 4 N -0.76 -16.46 4.35 -55.22 -0.24 -16.70 16 5 C 0.56 15.28 7.71 -12.99 -0.10 15.18 16 6 O -0.58 -17.99 14.68 5.20 0.08 -17.92 16 7 C -0.54 -15.17 9.54 -35.63 -0.34 -15.51 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 10 N -0.77 -22.65 11.83 55.55 0.66 -21.99 16 11 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 C 0.05 0.74 2.78 -26.48 -0.07 0.67 16 16 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 17 C 0.03 0.42 6.38 37.40 0.24 0.66 16 18 O -0.31 -4.70 10.42 -32.89 -0.34 -5.05 16 19 C 0.05 0.73 6.49 -39.14 -0.25 0.47 16 20 C -0.12 -1.42 9.96 -39.43 -0.39 -1.81 16 21 C -0.12 -1.25 10.04 -39.59 -0.40 -1.65 16 22 C -0.12 -1.24 10.04 -39.59 -0.40 -1.63 16 23 C -0.12 -1.45 9.96 -39.43 -0.39 -1.85 16 24 C 0.06 0.85 6.49 -39.14 -0.25 0.60 16 25 O -0.29 -4.69 8.93 -32.87 -0.29 -4.98 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.38 7.81 7.93 -40.82 -0.32 7.48 16 30 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 31 H 0.09 1.42 7.41 -51.93 -0.38 1.04 16 32 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -33.11 309.32 -7.21 -40.32 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.43 Total: 8.71 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.28 Total: -2.07 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.42 Total: -38.69 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.56 Total: -27.95 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.11 -7.21 -40.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000242645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.574 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds