Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21693 * 120.00014 * 0.28042 * 5 4 2 7 7 C 1.46373 * 120.00147 * 180.27610 * 5 4 2 8 8 H 1.08002 * 120.00141 * 0.02562 * 7 5 4 9 9 C 1.40050 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46768 * 60.00340 * 11 9 7 13 13 H 1.48504 * 109.47036 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47374 * 300.00617 * 11 9 7 15 15 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 16 16 H 1.08996 * 109.70321 * 299.41229 * 15 2 1 17 17 C 1.53474 * 109.70804 * 178.78626 * 15 2 1 18 18 O 1.43157 * 108.25363 * 180.59764 * 17 15 2 19 19 C 1.36112 * 116.71176 * 46.19362 * 18 17 15 20 20 C 1.38707 * 119.39632 * 162.95699 * 19 18 17 21 21 C 1.38192 * 120.06700 * 179.66983 * 20 19 18 22 22 C 1.38252 * 120.11228 * 359.97438 * 21 20 19 23 23 C 1.38193 * 120.11279 * 0.08385 * 22 21 20 24 24 C 1.38705 * 120.07006 * 359.96334 * 23 22 21 25 25 O 1.36108 * 119.40029 * 179.86579 * 24 23 22 26 26 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 27 27 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 29 29 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 30 30 H 0.96991 * 119.99824 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.70734 * 300.27078 * 17 15 2 32 32 H 1.09000 * 109.70825 * 60.89320 * 17 15 2 33 33 H 1.08000 * 119.96448 * 359.64994 * 20 19 18 34 34 H 1.08001 * 119.94133 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.94405 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.96690 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1417 -0.0196 -2.3585 6 8 1.8523 1.1612 -2.4131 7 6 2.6239 -0.7110 -3.5551 8 1 2.8805 -1.7590 -3.5068 9 6 2.7516 -0.0138 -4.7630 10 7 2.4408 1.2541 -4.8217 11 14 3.3677 -0.8961 -6.2900 12 1 2.4504 -2.0170 -6.6179 13 1 3.4124 0.0568 -7.4281 14 1 4.7304 -1.4294 -6.0377 15 6 2.0400 -0.7213 1.2493 16 1 1.6874 -0.2044 2.1417 17 6 3.5744 -0.7510 1.2396 18 8 4.0169 -1.4434 2.4119 19 6 3.3883 -2.6146 2.7046 20 6 3.9803 -3.5020 3.5911 21 6 3.3510 -4.6920 3.9035 22 6 2.1298 -5.0012 3.3339 23 6 1.5351 -4.1220 2.4489 24 6 2.1618 -2.9263 2.1303 25 8 1.5651 -2.0717 1.2550 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2490 -1.6318 -1.1527 30 1 2.5296 1.7369 -5.6582 31 1 3.9263 -1.2732 0.3498 32 1 3.9619 0.2678 1.2459 33 1 4.9342 -3.2628 4.0375 34 1 3.8136 -5.3813 4.5943 35 1 1.6402 -5.9318 3.5802 36 1 0.5813 -4.3661 2.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000242645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -111.475191 kcal Electronic energy + Delta-G solvation = -21503.517649 eV Core-core repulsion = 18145.232286 eV Total energy + Delta-G solvation = -3358.285363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.35582 -39.78016 -38.58340 -38.27938 -36.03192 -34.54969 -32.26552 -31.62469 -30.75726 -29.29306 -28.20398 -25.77380 -23.83854 -23.34043 -22.11429 -21.01232 -19.64246 -19.46123 -18.34808 -17.85326 -17.41360 -16.65589 -16.22269 -16.12330 -15.85434 -15.52860 -15.30740 -14.90828 -14.82790 -14.73819 -14.27841 -14.20721 -13.58829 -13.33582 -13.02901 -12.80649 -12.74316 -12.63463 -12.56436 -12.33706 -12.10414 -12.05847 -11.89715 -11.34240 -10.92809 -9.87582 -9.61243 -9.52670 -9.04005 -8.30080 -6.86529 0.34292 0.36508 1.39088 1.41809 1.53372 1.97152 2.18043 2.23470 2.46913 2.78308 2.95047 3.18598 3.52532 3.59209 3.68656 3.80870 4.14032 4.19686 4.28232 4.38944 4.42165 4.47858 4.51978 4.62092 4.77152 4.89461 4.98598 5.23236 5.25686 5.29518 5.31277 5.54730 5.76259 5.85666 5.92335 6.16286 6.25268 6.42492 6.86297 7.48923 8.47409 8.65858 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.004468 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.231885 B = 6265.222678 C = 6651.519817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.163 3.837 3 H 0.082 0.918 4 N -0.747 5.747 5 C 0.545 3.455 6 O -0.624 6.624 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.033 3.967 10 N -0.818 5.818 11 Si 0.993 3.007 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.256 1.256 15 C 0.062 3.938 16 H 0.108 0.892 17 C 0.031 3.969 18 O -0.318 6.318 19 C 0.020 3.980 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.127 4.127 24 C 0.030 3.970 25 O -0.310 6.310 26 H 0.032 0.968 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.390 0.610 30 H 0.275 0.725 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -12.144 16.248 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.057 3.943 3 H 0.099 0.901 4 N -0.401 5.401 5 C 0.349 3.651 6 O -0.511 6.511 7 C -0.612 4.612 8 H 0.099 0.901 9 C -0.182 4.182 10 N -0.447 5.447 11 Si 0.813 3.187 12 H -0.181 1.181 13 H -0.197 1.197 14 H -0.180 1.180 15 C 0.005 3.995 16 H 0.125 0.875 17 C -0.044 4.044 18 O -0.233 6.233 19 C -0.024 4.024 20 C -0.142 4.142 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.145 4.145 24 C -0.015 4.015 25 O -0.225 6.225 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.224 0.776 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.076 -11.048 16.100 19.556 hybrid contribution 0.210 -0.036 -1.017 1.039 sum 1.286 -11.085 15.083 18.762 Atomic orbital electron populations 1.21999 0.94946 1.02083 1.01527 1.20613 0.94967 0.95803 0.82927 0.90051 1.45868 1.72104 1.13207 1.08952 1.18456 0.77498 0.86017 0.83125 1.90557 1.56804 1.18219 1.85549 1.21370 1.47670 0.98045 0.94133 0.90113 1.26871 0.92738 0.95129 1.03483 1.70155 1.36356 1.10399 1.27831 0.85139 0.79654 0.78427 0.75509 1.18097 1.19718 1.18002 1.23374 0.94295 0.81820 0.99978 0.87481 1.23632 0.94358 0.99624 0.86792 1.86263 1.59396 1.33130 1.44496 1.19373 0.92144 0.89204 1.01711 1.20780 1.01365 0.93185 0.98914 1.21322 0.95424 0.95807 1.00539 1.21321 0.95796 0.99939 0.95839 1.20766 1.01297 0.92313 1.00137 1.19355 0.92323 0.93873 0.95942 1.86305 1.59350 1.19941 1.56942 0.94902 0.92045 0.90006 0.77630 0.91532 0.91360 0.84904 0.83742 0.81798 0.81954 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.34 71.98 0.67 -4.56 16 2 C 0.16 6.10 2.44 44.99 0.11 6.21 16 3 H 0.08 3.32 7.58 -2.39 -0.02 3.30 16 4 N -0.75 -33.42 4.35 -446.82 -1.94 -35.36 16 5 C 0.54 31.09 7.71 86.36 0.67 31.76 16 6 O -0.62 -40.62 14.68 -4.33 -0.06 -40.69 16 7 C -0.58 -32.71 9.54 24.83 0.24 -32.47 16 8 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 9 C 0.03 1.86 5.50 85.30 0.47 2.33 16 10 N -0.82 -49.69 11.83 21.84 0.26 -49.43 16 11 Si 0.99 41.13 29.56 68.60 2.03 43.16 16 12 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 13 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 15 C 0.06 1.90 2.78 30.75 0.09 1.98 16 16 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 17 C 0.03 0.95 6.38 72.14 0.46 1.41 16 18 O -0.32 -9.55 10.42 -82.60 -0.86 -10.41 16 19 C 0.02 0.57 6.49 22.56 0.15 0.72 16 20 C -0.12 -2.70 9.96 22.37 0.22 -2.48 16 21 C -0.11 -1.86 10.04 22.26 0.22 -1.63 16 22 C -0.11 -1.88 10.04 22.26 0.22 -1.66 16 23 C -0.13 -2.90 9.96 22.37 0.22 -2.68 16 24 C 0.03 0.85 6.49 22.56 0.15 1.00 16 25 O -0.31 -9.78 8.93 -82.55 -0.74 -10.52 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 2.11 7.69 -2.39 -0.02 2.10 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.39 16.33 7.93 -92.71 -0.74 15.59 16 30 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 31 H 0.07 2.30 7.41 -2.38 -0.02 2.28 16 32 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -74.56 309.32 2.94 -71.62 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.37 Total: 31.70 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 3.89 Total: -0.07 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.68 Total: -84.79 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -1.66 Total: -61.62 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -74.56 2.94 -71.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000242645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.853 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds